Wall clock time and date at job start Tue Mar 31 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35946 * 117.00516 * 2 1 4 4 C 1.37961 * 120.04863 * 0.28126 * 3 2 1 5 5 C 1.40350 * 119.68552 * 180.29324 * 4 3 2 6 6 C 1.46250 * 120.10744 * 179.69744 * 5 4 3 7 7 C 1.38163 * 120.00436 * 137.93504 * 6 5 4 8 8 C 1.47890 * 129.28038 * 168.85674 * 7 6 5 9 9 O 1.21718 * 127.78491 * 359.97438 * 8 7 6 10 10 O 1.34674 * 104.42369 * 180.23358 * 8 7 6 11 11 N 1.20285 * 113.67565 * 359.76100 * 10 8 7 12 12 C 1.30394 * 114.98420 * 359.97438 * 11 10 8 13 13 C 1.48251 * 127.26720 * 179.97438 * 12 11 10 14 14 C 1.39416 * 120.12325 * 310.05898 * 13 12 11 15 15 C 1.38002 * 119.86607 * 179.97438 * 14 13 12 16 16 C 1.38337 * 120.12884 * 0.27702 * 15 14 13 17 17 C 1.38341 * 120.25798 * 359.44255 * 16 15 14 18 18 C 1.38004 * 120.12500 * 0.55763 * 17 16 15 19 19 C 1.40369 * 119.79273 * 359.42786 * 5 4 3 20 20 C 1.36500 * 120.09450 * 0.27134 * 19 5 4 21 21 C 1.39178 * 120.31513 * 0.02562 * 20 19 5 22 22 O 1.35523 * 119.89155 * 179.97438 * 21 20 19 23 23 C 1.34707 * 117.00228 * 354.81767 * 22 21 20 24 24 H 1.07999 * 119.99950 * 5.12192 * 23 22 21 25 25 C 1.38792 * 119.99883 * 185.12416 * 23 22 21 26 26 N 1.31455 * 120.00062 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00045 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47075 * 90.00018 * 27 25 23 29 29 H 1.48494 * 109.47577 * 210.00329 * 27 25 23 30 30 H 1.48507 * 109.47203 * 330.00561 * 27 25 23 31 31 H 1.08994 * 109.47713 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46849 * 300.00244 * 1 2 3 33 33 H 1.09003 * 109.46822 * 59.99636 * 1 2 3 34 34 H 1.07999 * 120.15646 * 359.97438 * 4 3 2 35 35 H 1.08002 * 119.99944 * 317.93934 * 6 5 4 36 36 H 1.08000 * 120.07115 * 359.97438 * 14 13 12 37 37 H 1.07998 * 119.93412 * 179.97438 * 15 14 13 38 38 H 1.07997 * 119.87069 * 179.70218 * 16 15 14 39 39 H 1.07994 * 119.93401 * 180.25766 * 17 16 15 40 40 H 1.07996 * 120.06146 * 179.74151 * 18 17 16 41 41 H 1.07999 * 119.95321 * 180.25430 * 19 5 4 42 42 H 1.07995 * 119.84213 * 180.02562 * 20 19 5 43 43 H 0.97000 * 120.00159 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2112 0.0000 4 6 1.2960 2.3690 0.0059 5 6 1.9412 3.6154 -0.0004 6 6 1.1548 4.8485 -0.0010 7 6 1.5354 5.9110 0.7960 8 6 1.0417 7.3050 0.7965 9 8 0.1879 7.7941 0.0799 10 8 1.7538 7.9128 1.7646 11 7 2.5355 7.1853 2.3182 12 6 2.5475 5.9563 1.8828 13 6 3.3971 4.8412 2.3653 14 6 4.7744 5.0154 2.4924 15 6 5.5601 3.9740 2.9426 16 6 4.9843 2.7574 3.2619 17 6 3.6174 2.5806 3.1432 18 6 2.8216 3.6148 2.6941 19 6 3.3436 3.6748 -0.0004 20 6 4.0774 2.5238 0.0000 21 6 3.4420 1.2856 0.0000 22 8 4.1790 0.1483 0.0000 23 6 5.5148 0.2851 -0.1085 24 1 5.9586 1.2696 -0.1070 25 6 6.3205 -0.8393 -0.2222 26 7 5.7802 -2.0377 -0.2246 27 14 8.1727 -0.6496 -0.3733 28 1 8.7828 -0.6548 0.9805 29 1 8.7225 -1.7768 -1.1684 30 1 8.4851 0.6337 -1.0521 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 0.2173 2.3164 0.0100 35 1 0.2765 4.9286 -0.6243 36 1 5.2257 5.9633 2.2392 37 1 6.6273 4.1076 3.0411 38 1 5.6037 1.9438 3.6092 39 1 3.1728 1.6299 3.3979 40 1 1.7552 3.4743 2.5978 41 1 3.8427 4.6325 -0.0011 42 1 5.1562 2.5743 0.0004 43 1 6.3433 -2.8235 -0.3037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006441214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:28 Heat of formation + Delta-G solvation = 31.472147 kcal Electronic energy + Delta-G solvation = -33187.171816 eV Core-core repulsion = 28747.046080 eV Total energy + Delta-G solvation = -4440.125736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.114 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -44.06808 -40.15856 -38.90302 -38.10063 -37.93661 -36.72959 -34.46660 -32.84074 -31.92662 -30.69099 -30.19240 -29.87820 -29.12435 -27.22733 -26.17829 -25.37628 -23.45253 -22.50409 -22.13808 -21.78328 -20.28289 -19.98081 -18.46215 -17.93378 -17.59454 -17.52669 -16.63412 -16.22825 -15.73210 -15.49643 -15.38302 -15.17649 -14.87826 -14.55722 -14.41186 -14.16874 -13.87662 -13.82753 -13.57094 -13.33767 -13.22462 -13.13461 -12.78905 -12.60711 -12.17501 -12.04836 -11.84262 -11.59314 -11.39760 -11.21315 -11.12705 -11.05109 -10.93871 -10.82183 -10.69224 -10.40026 -9.92227 -9.76216 -9.28615 -8.85624 -8.63113 -8.40223 -8.07256 -7.11160 -6.89689 -4.33103 -0.00350 1.24596 1.64908 1.88143 2.07884 2.41738 2.85196 2.90852 2.94548 2.97146 3.16841 3.62554 3.75622 3.82354 3.99399 4.17900 4.32142 4.65320 4.76990 4.79431 4.95737 5.18066 5.18439 5.24977 5.34650 5.35114 5.38884 5.42838 5.52490 5.67641 5.70170 5.72621 5.81028 5.91987 6.03068 6.09114 6.16613 6.24313 6.27291 6.58467 6.64496 6.70808 6.73335 6.79825 6.85789 7.03831 7.16764 7.26167 7.33082 7.52203 7.88749 8.52882 8.56344 9.20247 10.24308 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.011077 B = 0.003799 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.190130 B = 7369.042289 C = 8787.173713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.126 4.126 5 C -0.205 4.205 6 C 0.161 3.839 7 C -0.332 4.332 8 C 0.448 3.552 9 O -0.452 6.452 10 O -0.031 6.031 11 N -0.316 5.316 12 C 0.129 3.871 13 C -0.021 4.021 14 C -0.095 4.095 15 C -0.122 4.122 16 C -0.092 4.092 17 C -0.108 4.108 18 C -0.068 4.068 19 C -0.016 4.016 20 C -0.222 4.222 21 C 0.161 3.839 22 O -0.131 6.131 23 C -0.379 4.379 24 H 0.102 0.898 25 C 0.044 3.956 26 N -0.830 5.830 27 Si 0.944 3.056 28 H -0.268 1.268 29 H -0.274 1.274 30 H -0.262 1.262 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.655 5.385 3.332 7.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.146 4.146 5 C -0.207 4.207 6 C 0.138 3.862 7 C -0.337 4.337 8 C 0.294 3.706 9 O -0.338 6.338 10 O -0.084 6.084 11 N -0.035 5.035 12 C -0.046 4.046 13 C -0.022 4.022 14 C -0.114 4.114 15 C -0.140 4.140 16 C -0.110 4.110 17 C -0.126 4.126 18 C -0.087 4.087 19 C -0.035 4.035 20 C -0.241 4.241 21 C 0.101 3.899 22 O -0.029 6.029 23 C -0.454 4.454 24 H 0.120 0.880 25 C -0.165 4.165 26 N -0.460 5.460 27 Si 0.767 3.233 28 H -0.193 1.193 29 H -0.198 1.198 30 H -0.186 1.186 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.154 0.846 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.445 5.700 3.789 7.663 hybrid contribution 0.226 -0.179 -0.755 0.808 sum -3.220 5.521 3.033 7.075 Atomic orbital electron populations 1.22923 0.80036 1.03207 1.00410 1.86237 1.19646 1.26098 1.89729 1.17941 0.89251 0.84529 1.07685 1.20765 0.98465 0.90407 1.04965 1.17980 0.92910 0.90794 1.18967 1.22623 0.91488 0.88194 0.83865 1.21772 1.09001 0.96500 1.06392 1.22526 0.81157 0.87003 0.79889 1.90914 1.28693 1.74520 1.39640 1.85062 1.43286 1.36520 1.43560 1.73079 1.09467 1.03122 1.17829 1.22726 0.95658 0.91821 0.94394 1.17407 0.91728 0.90742 1.02330 1.21047 0.92105 0.99035 0.99195 1.20969 0.99605 0.93190 1.00273 1.21236 0.95046 0.96945 0.97809 1.20971 0.93907 0.98342 0.99388 1.20974 0.99873 0.91506 0.96375 1.20729 0.91822 0.97715 0.93235 1.20415 1.00668 0.90441 1.12620 1.18898 0.88061 0.87284 0.95626 1.83920 1.19926 1.26600 1.72435 1.21677 0.78046 0.95353 1.50279 0.88029 1.25496 1.01249 0.94056 0.95742 1.70005 1.37213 0.98099 1.40644 0.85642 0.79329 0.79092 0.79212 1.19290 1.19835 1.18630 0.88917 0.93443 0.93388 0.85771 0.84484 0.86222 0.85976 0.85929 0.86014 0.86247 0.86917 0.84624 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.56 10.28 -34.10 -0.35 -5.91 16 3 C 0.05 0.92 6.70 -39.11 -0.26 0.65 16 4 C -0.13 -1.85 8.66 -38.89 -0.34 -2.19 16 5 C -0.20 -2.97 3.51 -105.08 -0.37 -3.34 16 6 C 0.16 2.13 9.91 -36.39 -0.36 1.76 16 7 C -0.33 -4.93 6.16 -101.71 -0.63 -5.56 16 8 C 0.45 7.35 9.05 34.68 0.31 7.66 16 9 O -0.45 -8.16 18.06 -18.89 -0.34 -8.50 16 10 O -0.03 -0.52 11.07 -8.44 -0.09 -0.61 16 11 N -0.32 -5.11 11.84 34.87 0.41 -4.70 16 12 C 0.13 1.96 6.41 -80.10 -0.51 1.45 16 13 C -0.02 -0.30 3.12 -104.91 -0.33 -0.63 16 14 C -0.09 -1.28 9.23 -39.23 -0.36 -1.64 16 15 C -0.12 -1.58 10.03 -39.63 -0.40 -1.97 16 16 C -0.09 -1.27 10.01 -39.51 -0.40 -1.67 16 17 C -0.11 -1.56 9.05 -39.63 -0.36 -1.91 16 18 C -0.07 -0.97 6.49 -39.23 -0.25 -1.23 16 19 C -0.02 -0.25 5.62 -39.41 -0.22 -0.48 16 20 C -0.22 -3.95 7.82 -39.86 -0.31 -4.26 16 21 C 0.16 3.24 6.68 -38.66 -0.26 2.99 16 22 O -0.13 -3.19 9.52 -13.43 -0.13 -3.32 16 23 C -0.38 -8.93 9.48 30.94 0.29 -8.64 16 24 H 0.10 2.18 5.18 -52.49 -0.27 1.91 16 25 C 0.04 1.03 5.50 -17.51 -0.10 0.94 16 26 N -0.83 -21.28 13.67 55.49 0.76 -20.52 16 27 Si 0.94 17.64 29.55 -169.99 -5.02 12.62 16 28 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 29 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 30 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.50 7.65 -51.93 -0.40 0.11 16 33 H 0.05 0.52 7.67 -51.93 -0.40 0.12 16 34 H 0.12 1.47 6.29 -52.49 -0.33 1.14 16 35 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 1.67 7.47 -52.49 -0.39 1.28 16 41 H 0.11 1.72 6.45 -52.49 -0.34 1.38 16 42 H 0.14 2.46 5.60 -52.49 -0.29 2.17 16 43 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -28.03 371.60 -7.11 -35.14 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.09 Total: 6.91 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -3.85 Total: -16.70 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 1.17 Total: -25.22 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.91 Total: -18.35 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.02 Total: 12.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.03 -7.11 -35.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006441214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.613 kcal (2) G-P(sol) polarization free energy of solvation -28.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds