Wall clock time and date at job start Tue Mar 31 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35950 * 117.00092 * 2 1 4 4 C 1.37998 * 120.04987 * 0.29790 * 3 2 1 5 5 C 1.40293 * 119.68697 * 180.31491 * 4 3 2 6 6 C 1.46346 * 120.10190 * 179.70113 * 5 4 3 7 7 C 1.38049 * 119.99798 * 323.91267 * 6 5 4 8 8 N 1.36378 * 127.27144 * 171.99045 * 7 6 5 9 9 C 1.30449 * 109.09851 * 179.97438 * 8 7 6 10 10 C 1.47647 * 124.23251 * 180.02562 * 9 8 7 11 11 C 1.39678 * 120.15747 * 179.97438 * 10 9 8 12 12 C 1.37924 * 119.84420 * 180.02562 * 11 10 9 13 13 C 1.38382 * 120.15672 * 359.97438 * 12 11 10 14 14 C 1.38377 * 120.30972 * 0.02562 * 13 12 11 15 15 C 1.37931 * 120.15551 * 0.02562 * 14 13 12 16 16 O 1.34700 * 111.54070 * 0.26579 * 9 8 7 17 17 C 1.35050 * 108.67106 * 359.56360 * 16 9 8 18 18 O 1.21676 * 127.38763 * 180.13777 * 17 16 9 19 19 C 1.40317 * 119.79939 * 359.42987 * 5 4 3 20 20 C 1.36533 * 120.09388 * 0.25021 * 19 5 4 21 21 C 1.39145 * 120.31940 * 0.02562 * 20 19 5 22 22 O 1.35550 * 119.89731 * 180.02562 * 21 20 19 23 23 C 1.34716 * 117.00327 * 5.62192 * 22 21 20 24 24 H 1.07997 * 119.99865 * 354.92549 * 23 22 21 25 25 C 1.38740 * 120.00293 * 174.92557 * 23 22 21 26 26 N 1.31501 * 119.99707 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00462 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46809 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46764 * 119.99970 * 27 25 23 30 30 H 1.48499 * 109.47328 * 240.00208 * 27 25 23 31 31 H 1.08996 * 109.46774 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47438 * 300.00645 * 1 2 3 33 33 H 1.09003 * 109.46450 * 60.00834 * 1 2 3 34 34 H 1.08003 * 120.15669 * 0.04235 * 4 3 2 35 35 H 1.07993 * 120.00350 * 143.91893 * 6 5 4 36 36 H 1.07998 * 120.07296 * 0.04521 * 11 10 9 37 37 H 1.07999 * 119.92376 * 179.97438 * 12 11 10 38 38 H 1.07993 * 119.84444 * 179.74182 * 13 12 11 39 39 H 1.07995 * 119.92353 * 179.97438 * 14 13 12 40 40 H 1.08005 * 120.07903 * 180.02562 * 15 14 13 41 41 H 1.07991 * 119.95327 * 180.27611 * 19 5 4 42 42 H 1.08000 * 119.84236 * 180.02562 * 20 19 5 43 43 H 0.96994 * 119.99912 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2957 2.3693 0.0062 5 6 1.9405 3.6153 -0.0005 6 6 1.1534 4.8491 -0.0006 7 6 -0.0356 4.9092 -0.6996 8 7 -0.9544 5.9168 -0.6810 9 6 -1.9438 5.6068 -1.4726 10 6 -3.1234 6.4644 -1.7030 11 6 -4.1351 6.0478 -2.5712 12 6 -5.2339 6.8544 -2.7820 13 6 -5.3356 8.0736 -2.1355 14 6 -4.3371 8.4927 -1.2740 15 6 -3.2321 7.6968 -1.0546 16 8 -1.7574 4.4040 -2.0496 17 6 -0.5798 3.8981 -1.6239 18 8 -0.0780 2.8336 -1.9329 19 6 3.3424 3.6750 -0.0014 20 6 4.0766 2.5238 -0.0009 21 6 3.4417 1.2857 0.0000 22 8 4.1790 0.1483 0.0010 23 6 5.5141 0.2849 0.1188 24 1 5.9577 1.2695 0.1243 25 6 6.3191 -0.8393 0.2329 26 7 5.7788 -2.0382 0.2267 27 14 8.1703 -0.6499 0.3954 28 1 8.5239 0.7923 0.3764 29 1 8.6188 -1.2523 1.6765 30 1 8.8397 -1.3391 -0.7369 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8901 34 1 0.2170 2.3167 0.0118 35 1 1.5027 5.7125 0.5459 36 1 -4.0573 5.0961 -3.0758 37 1 -6.0168 6.5337 -3.4533 38 1 -6.1961 8.7030 -2.3075 39 1 -4.4226 9.4456 -0.7730 40 1 -2.4537 8.0249 -0.3816 41 1 3.8413 4.6327 -0.0021 42 1 5.1554 2.5745 -0.0011 43 1 6.3417 -2.8241 0.3061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006441220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:36 Heat of formation + Delta-G solvation = -10.143609 kcal Electronic energy + Delta-G solvation = -30931.094681 eV Core-core repulsion = 26489.164350 eV Total energy + Delta-G solvation = -4441.930331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.114 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -42.60487 -39.83425 -39.28165 -37.93540 -37.59571 -36.59378 -34.99651 -32.88005 -32.42891 -31.35352 -30.99539 -29.71291 -28.08111 -26.73409 -25.92801 -25.09475 -23.19267 -23.01066 -21.99304 -21.61661 -21.14070 -19.87969 -18.41055 -18.03219 -17.32827 -16.88023 -16.61226 -16.44402 -15.99687 -15.66406 -15.33987 -15.13089 -14.87173 -14.71419 -14.40654 -14.18469 -13.81230 -13.74068 -13.73418 -13.66138 -13.43554 -13.25084 -12.56896 -12.40036 -12.10214 -11.91533 -11.80795 -11.63274 -11.55522 -11.46915 -11.24795 -11.19613 -11.08272 -10.75138 -10.58953 -10.55276 -9.81267 -9.78664 -9.58621 -9.28681 -9.17756 -8.39940 -7.81412 -6.95049 -6.84449 -4.26253 -0.17504 0.86003 1.08490 2.07254 2.17255 2.46072 2.62960 2.94245 2.94828 3.02056 3.18142 3.59673 3.67437 3.83121 3.98105 4.13127 4.31053 4.63573 4.64246 4.75389 4.77891 4.84859 5.00551 5.09979 5.21159 5.31855 5.45823 5.49771 5.57264 5.62215 5.68879 5.69924 5.71054 5.92441 5.93905 6.07684 6.10404 6.13838 6.15800 6.22338 6.38516 6.42760 6.58052 6.70187 6.88768 6.92642 7.07561 7.37369 7.49506 7.57641 7.71101 8.07440 8.57016 9.26352 10.29578 Molecular weight = 365.11amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.001918 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.522861 B =14598.137798 C =15354.331334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.047 3.953 4 C -0.088 4.088 5 C -0.201 4.201 6 C 0.137 3.863 7 C -0.167 4.167 8 N -0.447 5.447 9 C 0.278 3.722 10 C -0.021 4.021 11 C -0.086 4.086 12 C -0.123 4.123 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.070 4.070 16 O -0.296 6.296 17 C 0.468 3.532 18 O -0.424 6.424 19 C -0.033 4.033 20 C -0.232 4.232 21 C 0.158 3.842 22 O -0.130 6.130 23 C -0.381 4.381 24 H 0.104 0.896 25 C 0.040 3.960 26 N -0.828 5.828 27 Si 0.951 3.049 28 H -0.262 1.262 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.320 16.951 -1.314 22.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.002 3.998 4 C -0.108 4.108 5 C -0.203 4.203 6 C 0.118 3.882 7 C -0.275 4.275 8 N -0.175 5.175 9 C 0.066 3.934 10 C -0.022 4.022 11 C -0.106 4.106 12 C -0.141 4.141 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.090 4.090 16 O -0.200 6.200 17 C 0.313 3.687 18 O -0.309 6.309 19 C -0.051 4.051 20 C -0.251 4.251 21 C 0.098 3.902 22 O -0.028 6.028 23 C -0.455 4.455 24 H 0.122 0.878 25 C -0.169 4.169 26 N -0.458 5.458 27 Si 0.774 3.226 28 H -0.185 1.185 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.158 0.842 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.741 16.139 -1.066 21.884 hybrid contribution 0.530 -0.449 -0.471 0.840 sum -14.211 15.690 -1.536 21.225 Atomic orbital electron populations 1.22930 0.79998 1.02904 1.00719 1.86184 1.19744 1.25983 1.89761 1.17935 0.89100 0.84846 1.07962 1.20961 0.98701 0.90528 1.00582 1.18028 0.92907 0.91051 1.18357 1.22355 0.86676 0.95474 0.83745 1.21336 1.01177 0.95345 1.09601 1.70956 1.01604 1.26533 1.18413 1.22897 0.95394 0.83134 0.92019 1.17495 0.90619 0.93456 1.00621 1.21342 0.92758 1.00088 0.96399 1.21084 0.97974 0.94663 1.00423 1.21368 0.98727 0.96193 0.95992 1.21110 0.93882 1.00093 0.99147 1.21245 0.98096 0.91917 0.97718 1.84954 1.40504 1.32158 1.62377 1.21888 0.78441 0.86911 0.81499 1.91047 1.59093 1.20978 1.59757 1.20625 0.91729 0.97741 0.95040 1.20533 1.00832 0.90705 1.13072 1.18992 0.88236 0.87330 0.95596 1.83941 1.19964 1.26734 1.72148 1.21801 0.78248 0.95538 1.49953 0.87830 1.25573 1.01529 0.94035 0.95777 1.70048 1.37204 0.98093 1.40429 0.85490 0.78973 0.79442 0.78718 1.18539 1.19628 1.19640 0.89036 0.93915 0.92700 0.85800 0.83981 0.84926 0.85317 0.85634 0.85199 0.84280 0.86315 0.84244 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.30 -6.89 10.28 -34.11 -0.35 -7.24 16 3 C 0.05 1.05 6.70 -39.11 -0.26 0.79 16 4 C -0.09 -1.75 6.04 -38.90 -0.23 -1.98 16 5 C -0.20 -3.58 5.51 -105.08 -0.58 -4.15 16 6 C 0.14 2.06 9.96 -36.39 -0.36 1.70 16 7 C -0.17 -2.75 6.85 -82.18 -0.56 -3.31 16 8 N -0.45 -6.83 10.80 -7.84 -0.08 -6.91 16 9 C 0.28 4.04 7.78 -14.30 -0.11 3.93 16 10 C -0.02 -0.24 5.87 -104.98 -0.62 -0.85 16 11 C -0.09 -0.83 9.70 -39.16 -0.38 -1.21 16 12 C -0.12 -0.92 10.03 -39.64 -0.40 -1.31 16 13 C -0.10 -0.69 10.04 -39.48 -0.40 -1.09 16 14 C -0.12 -0.90 10.03 -39.64 -0.40 -1.30 16 15 C -0.07 -0.67 9.66 -39.16 -0.38 -1.05 16 16 O -0.30 -4.86 10.35 -21.55 -0.22 -5.09 16 17 C 0.47 8.49 7.97 34.46 0.27 8.77 16 18 O -0.42 -8.68 13.33 -18.86 -0.25 -8.93 16 19 C -0.03 -0.56 9.74 -39.42 -0.38 -0.95 16 20 C -0.23 -4.70 9.09 -39.86 -0.36 -5.06 16 21 C 0.16 3.77 6.68 -38.68 -0.26 3.51 16 22 O -0.13 -3.57 9.52 -13.54 -0.13 -3.70 16 23 C -0.38 -9.84 9.48 30.92 0.29 -9.55 16 24 H 0.10 2.40 5.18 -52.49 -0.27 2.12 16 25 C 0.04 1.01 5.49 -17.51 -0.10 0.92 16 26 N -0.83 -22.69 13.67 55.48 0.76 -21.94 16 27 Si 0.95 18.67 29.55 -169.99 -5.02 13.64 16 28 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 29 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 30 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 33 H 0.05 0.96 7.00 -51.93 -0.36 0.60 16 34 H 0.12 2.37 4.21 -52.48 -0.22 2.15 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.13 1.24 7.83 -52.49 -0.41 0.83 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.14 1.28 7.76 -52.48 -0.41 0.88 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 42 H 0.14 2.68 5.61 -52.49 -0.29 2.38 16 43 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -31.79 377.22 -7.88 -39.66 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.04 Total: 5.50 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -4.22 Total: -10.68 kcal Atomic # 7 Polarization: -29.52 SS G_CDS: 0.67 Total: -28.85 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.95 Total: -24.96 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.79 -7.88 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006441220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.519 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds