Wall clock time and date at job start Tue Mar 31 2020 07:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34711 * 116.99609 * 2 1 4 4 O 1.21468 * 120.00138 * 359.97438 * 3 2 1 5 5 C 1.47741 * 119.99996 * 180.02562 * 3 2 1 6 6 C 1.39661 * 120.12171 * 359.96969 * 5 3 2 7 7 C 1.37942 * 119.95897 * 180.02562 * 6 5 3 8 8 C 1.38302 * 120.21424 * 359.72630 * 7 6 5 9 9 C 1.38817 * 120.24843 * 0.54760 * 8 7 6 10 10 O 1.35906 * 119.98135 * 179.72256 * 9 8 7 11 11 C 1.42901 * 117.00196 * 359.73375 * 10 9 8 12 12 C 1.53005 * 109.46855 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.46622 * 304.99398 * 12 11 10 14 14 O 1.42891 * 109.47460 * 64.99932 * 12 11 10 15 15 C 1.53003 * 109.46664 * 184.99948 * 12 11 10 16 16 N 1.46903 * 109.47026 * 179.86479 * 15 12 11 17 17 C 1.46898 * 110.99862 * 163.84079 * 16 15 12 18 18 C 1.50700 * 109.46702 * 199.46814 * 17 16 15 19 19 H 1.08007 * 120.00582 * 5.28535 * 18 17 16 20 20 C 1.37878 * 119.99772 * 185.28855 * 18 17 16 21 21 N 1.31516 * 120.00161 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00128 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47164 * 89.99429 * 22 20 18 24 24 H 1.48492 * 109.47061 * 209.99868 * 22 20 18 25 25 H 1.48503 * 109.46630 * 329.99461 * 22 20 18 26 26 C 1.46901 * 110.99738 * 287.79734 * 16 15 12 27 27 C 1.53004 * 109.46584 * 162.49854 * 26 16 15 28 28 C 1.53010 * 109.46613 * 179.15585 * 27 26 16 29 29 C 1.53004 * 109.47211 * 299.14997 * 27 26 16 30 30 C 1.38482 * 120.03113 * 359.45579 * 9 8 7 31 31 H 1.08999 * 109.46574 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47325 * 300.00181 * 1 2 3 33 33 H 1.09001 * 109.46970 * 60.00705 * 1 2 3 34 34 H 1.07993 * 120.01815 * 0.02562 * 6 5 3 35 35 H 1.08000 * 119.89394 * 179.97438 * 7 6 5 36 36 H 1.08007 * 119.87486 * 180.27848 * 8 7 6 37 37 H 1.08998 * 109.47269 * 59.99861 * 11 10 9 38 38 H 1.08997 * 109.46761 * 299.99309 * 11 10 9 39 39 H 0.96704 * 113.99882 * 59.99322 * 14 12 11 40 40 H 1.08997 * 109.47132 * 59.86820 * 15 12 11 41 41 H 1.09002 * 109.47074 * 299.86184 * 15 12 11 42 42 H 1.09002 * 109.47155 * 319.46792 * 17 16 15 43 43 H 1.08995 * 109.47034 * 79.47244 * 17 16 15 44 44 H 0.97000 * 119.99983 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47059 * 282.49565 * 26 16 15 46 46 H 1.08994 * 109.47409 * 42.49713 * 26 16 15 47 47 H 1.08996 * 109.47389 * 59.15607 * 27 26 16 48 48 H 1.08996 * 109.47225 * 59.99922 * 28 27 26 49 49 H 1.09003 * 109.46823 * 180.02562 * 28 27 26 50 50 H 1.08997 * 109.46770 * 299.99522 * 28 27 26 51 51 H 1.08999 * 109.46480 * 64.65134 * 29 27 26 52 52 H 1.09001 * 109.46504 * 184.64901 * 29 27 26 53 53 H 1.08988 * 109.47393 * 304.65397 * 29 27 26 54 54 H 1.08007 * 120.10195 * 180.24877 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5389 1.2778 -0.0006 6 6 4.3021 0.1081 -0.0005 7 6 5.6795 0.1843 -0.0005 8 6 6.3084 1.4161 -0.0063 9 6 5.5584 2.5842 -0.0007 10 8 6.1821 3.7917 -0.0007 11 6 7.6110 3.7839 -0.0008 12 6 8.1289 5.2236 -0.0015 13 1 7.6972 5.7645 -0.8436 14 8 7.7544 5.8651 1.2192 15 6 9.6537 5.2170 -0.1273 16 7 10.1508 6.5993 -0.1312 17 6 11.5950 6.6402 0.1340 18 6 11.9825 8.0225 0.5925 19 1 11.2205 8.7693 0.7604 20 6 13.3099 8.3339 0.7977 21 7 14.2378 7.4245 0.5937 22 14 13.7903 10.0471 1.3667 23 1 13.8081 10.0888 2.8510 24 1 15.1401 10.3813 0.8458 25 1 12.8044 11.0330 0.8555 26 6 9.8287 7.2709 -1.3974 27 6 9.9550 8.7851 -1.2180 28 6 9.6400 9.4836 -2.5424 29 6 8.9694 9.2556 -0.1464 30 6 4.1751 2.5197 -0.0006 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5137 -0.8901 34 1 3.8143 -0.8553 -0.0004 35 1 6.2686 -0.7208 0.0000 36 1 7.3871 1.4693 -0.0108 37 1 7.9715 3.2680 -0.8907 38 1 7.9715 3.2682 0.8892 39 1 8.1043 5.4364 2.0122 40 1 9.9394 4.7255 -1.0573 41 1 10.0855 4.6780 0.7161 42 1 11.8423 5.9170 0.9111 43 1 12.1390 6.3941 -0.7779 44 1 15.1717 7.6435 0.7384 45 1 10.5202 6.9378 -2.1714 46 1 8.8086 7.0236 -1.6907 47 1 10.9712 9.0311 -0.9102 48 1 8.6238 9.2376 -2.8502 49 1 9.7304 10.5623 -2.4147 50 1 10.3421 9.1484 -3.3058 51 1 9.2440 8.8220 0.8152 52 1 9.0003 10.3430 -0.0768 53 1 7.9621 8.9371 -0.4142 54 1 3.5904 3.4278 -0.0003 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006552525.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:40 Heat of formation + Delta-G solvation = -162.925791 kcal Electronic energy + Delta-G solvation = -32873.170572 eV Core-core repulsion = 28388.972378 eV Total energy + Delta-G solvation = -4484.198194 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 365.208 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.78593 -40.99112 -39.68822 -38.51498 -37.57311 -37.28652 -35.11058 -34.47543 -32.52145 -32.07830 -30.86421 -29.11937 -28.65253 -27.78166 -27.34408 -25.89089 -24.95573 -23.48576 -23.06818 -22.12535 -21.77487 -20.59434 -19.72217 -18.51700 -18.37328 -17.74805 -17.54780 -17.42441 -17.29639 -16.89532 -16.79577 -16.40869 -16.22896 -15.88551 -15.28401 -15.23154 -14.99376 -14.85072 -14.64419 -14.47578 -14.23133 -14.05223 -14.00443 -13.91293 -13.44499 -13.20064 -13.06483 -13.00025 -12.95056 -12.86355 -12.70680 -12.47236 -12.37306 -12.27019 -12.02452 -11.91521 -11.87004 -11.79607 -11.67819 -11.57143 -11.43538 -11.27251 -10.86470 -10.80604 -10.43869 -10.21018 -9.33738 -8.87790 -8.11679 -6.14537 -0.46659 0.33410 1.39362 1.42803 1.44064 1.47992 1.54139 2.10505 2.45143 2.68470 3.20365 3.25611 3.56923 3.60852 3.71729 3.84542 3.93902 4.00558 4.10423 4.15015 4.19193 4.27473 4.28059 4.31258 4.32043 4.40206 4.41153 4.45955 4.55252 4.70671 4.72643 4.76377 4.79755 4.81312 4.94872 5.06523 5.10211 5.11371 5.17487 5.18294 5.19489 5.24861 5.27673 5.31906 5.35789 5.48168 5.58518 5.69673 5.86651 5.91243 6.18316 6.32801 6.44308 6.56860 6.71624 6.96372 7.00140 7.50492 8.98397 Molecular weight = 365.21amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.001660 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.958118 B =16861.700842 C =17611.939105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.105 4.105 6 C -0.094 4.094 7 C -0.083 4.083 8 C -0.170 4.170 9 C 0.108 3.892 10 O -0.321 6.321 11 C 0.032 3.968 12 C 0.128 3.872 13 H 0.092 0.908 14 O -0.555 6.555 15 C 0.027 3.973 16 N -0.526 5.526 17 C 0.208 3.792 18 C -0.503 4.503 19 H 0.083 0.917 20 C 0.001 3.999 21 N -0.936 5.936 22 Si 0.951 3.049 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.264 1.264 26 C 0.081 3.919 27 C -0.114 4.114 28 C -0.137 4.137 29 C -0.114 4.114 30 C -0.110 4.110 31 H 0.139 0.861 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.162 0.838 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.381 0.619 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.003 0.997 43 H -0.035 1.035 44 H 0.259 0.741 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.048 0.952 52 H 0.040 0.960 53 H 0.046 0.954 54 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.225 -18.720 -3.087 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.358 3.642 4 O -0.428 6.428 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.189 4.189 9 C 0.063 3.937 10 O -0.235 6.235 11 C -0.044 4.044 12 C 0.068 3.932 13 H 0.110 0.890 14 O -0.361 6.361 15 C -0.102 4.102 16 N -0.249 5.249 17 C 0.082 3.918 18 C -0.541 4.541 19 H 0.101 0.899 20 C -0.196 4.196 21 N -0.578 5.578 22 Si 0.777 3.223 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.188 1.188 26 C -0.047 4.047 27 C -0.132 4.132 28 C -0.195 4.195 29 C -0.171 4.171 30 C -0.129 4.129 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.180 0.820 35 H 0.189 0.811 36 H 0.173 0.827 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.229 0.771 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.021 0.979 43 H -0.017 1.017 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.088 0.912 47 H 0.098 0.902 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.059 0.941 53 H 0.065 0.935 54 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.903 -17.613 -3.111 28.278 hybrid contribution 1.366 0.182 -0.018 1.378 sum -20.537 -17.431 -3.128 27.118 Atomic orbital electron populations 1.23636 0.74069 1.06150 1.02642 1.86524 1.25339 1.31088 1.83699 1.21347 0.89377 0.81615 0.71909 1.90839 1.67538 1.37264 1.47197 1.18822 0.88810 0.94591 1.08381 1.21640 0.94243 0.97807 0.97513 1.21383 0.94091 0.98218 0.96396 1.21917 1.01814 0.91904 1.03262 1.18931 0.91624 0.85441 0.97715 1.86142 1.22003 1.26859 1.88521 1.23690 0.77690 0.99052 1.03958 1.21736 0.92211 0.90515 0.88736 0.89029 1.86616 1.76448 1.57412 1.15606 1.22675 0.94875 0.91117 1.01498 1.61864 1.15985 1.13999 1.33069 1.19461 0.82491 0.96546 0.93261 1.21760 0.92032 0.98177 1.42168 0.89917 1.25761 0.96877 1.00569 0.96380 1.70077 1.00788 1.35503 1.51454 0.85652 0.77388 0.80791 0.78505 1.20339 1.21436 1.18784 1.21981 0.98554 0.95061 0.89147 1.21489 1.01913 0.94199 0.95636 1.21768 1.01152 1.00149 0.96450 1.21468 0.97730 0.98770 0.99176 1.20386 0.92211 0.97748 1.02561 0.84296 0.91941 0.91912 0.82028 0.81130 0.82650 0.89187 0.89455 0.77095 0.93904 0.90332 0.97912 1.01738 0.93200 0.97323 0.91188 0.90202 0.92138 0.92567 0.93471 0.93300 0.94100 0.93516 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.61 9.81 -56.21 -0.55 -6.16 16 3 C 0.51 11.07 7.90 70.33 0.56 11.62 16 4 O -0.54 -15.03 16.13 19.94 0.32 -14.71 16 5 C -0.10 -2.08 5.87 -20.11 -0.12 -2.20 16 6 C -0.09 -1.26 9.61 22.54 0.22 -1.04 16 7 C -0.08 -0.93 10.02 22.21 0.22 -0.70 16 8 C -0.17 -2.53 9.03 22.42 0.20 -2.32 16 9 C 0.11 2.31 6.68 22.47 0.15 2.46 16 10 O -0.32 -7.84 10.10 -87.85 -0.89 -8.73 16 11 C 0.03 0.62 4.37 71.98 0.31 0.93 16 12 C 0.13 3.34 3.26 30.60 0.10 3.44 16 13 H 0.09 2.61 6.55 -2.39 -0.02 2.59 16 14 O -0.56 -16.56 13.17 -144.34 -1.90 -18.47 16 15 C 0.03 0.82 4.63 86.30 0.40 1.22 16 16 N -0.53 -20.69 3.65 -900.79 -3.29 -23.98 16 17 C 0.21 10.36 4.76 85.56 0.41 10.77 16 18 C -0.50 -26.86 6.91 25.60 0.18 -26.68 16 19 H 0.08 4.32 4.54 -2.91 -0.01 4.31 16 20 C 0.00 0.07 5.46 84.65 0.46 0.53 16 21 N -0.94 -54.93 13.29 21.45 0.28 -54.65 16 22 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.08 2.98 4.25 86.30 0.37 3.34 16 27 C -0.11 -4.29 2.40 -10.79 -0.03 -4.32 16 28 C -0.14 -4.22 9.19 71.99 0.66 -3.56 16 29 C -0.11 -4.15 8.42 71.98 0.61 -3.54 16 30 C -0.11 -2.56 9.53 22.64 0.22 -2.34 16 31 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.16 1.38 7.61 -2.91 -0.02 1.36 16 35 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.16 1.65 6.28 -2.91 -0.02 1.63 16 37 H 0.09 1.40 7.64 -2.39 -0.02 1.39 16 38 H 0.09 1.37 7.67 -2.39 -0.02 1.35 16 39 H 0.38 9.06 9.05 -74.05 -0.67 8.39 16 40 H 0.04 1.21 8.05 -2.39 -0.02 1.19 16 41 H 0.08 2.29 7.68 -2.39 -0.02 2.27 16 42 H 0.00 0.15 7.65 -2.39 -0.02 0.13 16 43 H -0.04 -1.94 7.77 -2.39 -0.02 -1.96 16 44 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 45 H 0.01 0.34 7.78 -2.39 -0.02 0.32 16 46 H 0.07 2.27 6.28 -2.39 -0.02 2.26 16 47 H 0.08 3.66 4.83 -2.39 -0.01 3.65 16 48 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 51 H 0.05 2.02 6.76 -2.39 -0.02 2.00 16 52 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 54 H 0.12 3.31 7.65 -2.91 -0.02 3.28 16 Total: -1.00 -71.64 435.17 2.36 -69.28 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.24 Total: 22.52 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 6.11 Total: -10.92 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.00 Total: -78.63 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -3.02 Total: -48.06 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -71.64 2.36 -69.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006552525.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.642 kcal (2) G-P(sol) polarization free energy of solvation -71.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds