Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00510 * 2 1 4 4 N 1.46498 * 109.47172 * 127.11509 * 3 2 1 5 5 C 1.36743 * 127.15626 * 83.57987 * 4 3 2 6 6 S 1.76204 * 126.38936 * 0.02611 * 5 4 3 7 7 C 1.76201 * 99.99856 * 179.70593 * 6 5 4 8 8 H 1.08000 * 120.00113 * 0.02562 * 7 6 5 9 9 C 1.38632 * 119.99821 * 179.97438 * 7 6 5 10 10 N 1.31655 * 120.00153 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47518 * 59.99860 * 11 9 7 13 13 H 1.48501 * 109.47044 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47036 * 299.99823 * 11 9 7 15 15 N 1.31571 * 107.22168 * 179.75732 * 5 4 3 16 16 N 1.28519 * 110.02605 * 0.24523 * 15 5 4 17 17 C 1.31504 * 109.94936 * 359.97438 * 16 15 5 18 18 C 1.47782 * 126.43905 * 180.02562 * 17 16 15 19 19 C 1.39616 * 120.13564 * 213.78709 * 18 17 16 20 20 C 1.37925 * 119.85849 * 179.76641 * 19 18 17 21 21 C 1.38460 * 120.14013 * 0.49492 * 20 19 18 22 22 Br 1.89095 * 119.86610 * 179.73886 * 21 20 19 23 23 C 1.38464 * 120.27319 * 359.76298 * 21 20 19 24 24 C 1.37920 * 120.14338 * 0.02562 * 23 21 20 25 25 H 1.08000 * 119.99739 * 357.01292 * 1 2 3 26 26 H 1.07993 * 120.00208 * 177.01486 * 1 2 3 27 27 H 1.08008 * 119.99435 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46654 * 7.11429 * 3 2 1 29 29 H 1.09001 * 109.46711 * 247.11391 * 3 2 1 30 30 H 0.96996 * 119.99688 * 180.02562 * 10 9 7 31 31 H 1.08008 * 120.07240 * 359.97438 * 19 18 17 32 32 H 1.08000 * 119.92907 * 180.23025 * 20 19 18 33 33 H 1.08007 * 119.93004 * 179.97438 * 23 21 20 34 34 H 1.07996 * 120.07348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0296 1.3112 1.1014 5 6 4.2858 0.7710 1.1012 6 16 5.0604 -0.0735 -0.2373 7 6 6.6163 -0.4510 0.4985 8 1 6.8211 -0.1473 1.5145 9 6 7.5771 -1.1389 -0.2263 10 7 7.3270 -1.5105 -1.4643 11 14 9.2264 -1.5398 0.5540 12 1 9.0127 -2.3833 1.7574 13 1 10.0700 -2.2753 -0.4220 14 1 9.9072 -0.2800 0.9471 15 7 4.8104 1.0045 2.2850 16 7 3.9719 1.6440 3.0196 17 6 2.8608 1.8583 2.3497 18 6 1.6587 2.5608 2.8451 19 6 0.3895 2.1629 2.4208 20 6 -0.7288 2.8195 2.8906 21 6 -0.5941 3.8778 3.7732 22 35 -2.1322 4.7772 4.4066 23 6 0.6621 4.2806 4.1935 24 6 1.7879 3.6294 3.7344 25 1 -0.5400 0.9341 0.0487 26 1 -0.5400 -0.9340 -0.0487 27 1 1.8500 -0.9354 -0.0004 28 1 1.3622 2.1296 0.1273 29 1 2.5914 1.4198 -0.9468 30 1 7.9992 -1.9921 -1.9713 31 1 0.2834 1.3405 1.7288 32 1 -1.7113 2.5102 2.5660 33 1 0.7608 5.1071 4.8818 34 1 2.7672 3.9443 4.0634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006595641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = 120.636956 kcal Electronic energy + Delta-G solvation = -21041.767190 eV Core-core repulsion = 17727.859922 eV Total energy + Delta-G solvation = -3313.907268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 364.989 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12903 -39.25292 -36.14724 -33.12222 -32.76277 -32.48566 -31.30677 -30.60637 -28.36128 -26.68566 -25.73280 -23.26102 -23.22484 -21.72101 -20.57891 -20.20962 -18.11849 -17.44444 -16.48155 -15.92443 -15.58844 -15.45673 -15.14337 -14.98305 -14.45130 -14.00003 -13.74563 -13.59529 -13.47051 -13.06605 -12.55141 -11.77028 -11.65596 -11.56681 -11.37159 -11.22780 -11.14054 -11.11596 -10.79642 -10.54253 -10.27377 -9.99252 -9.89688 -9.72502 -9.65282 -9.28662 -9.21156 -8.95353 -8.48011 -6.83961 -6.53065 -4.27935 0.59090 1.08039 1.36040 1.85794 2.26867 2.43702 3.18417 3.19791 3.22395 3.27691 3.30381 3.64898 3.96069 4.34361 4.54441 4.61005 4.65134 4.70700 4.91409 4.94929 5.06174 5.08745 5.15560 5.37121 5.39254 5.64913 5.69901 5.83811 5.86758 5.94899 6.15629 6.34035 6.38714 6.47045 6.52227 6.59033 7.21826 7.51566 8.31016 8.99178 9.30805 10.55022 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002283 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.595954 B =12259.272959 C =13199.432244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.165 4.165 3 C 0.133 3.867 4 N -0.469 5.469 5 C 0.178 3.822 6 S 0.145 5.855 7 C -0.535 4.535 8 H 0.105 0.895 9 C 0.077 3.923 10 N -0.878 5.878 11 Si 0.933 3.067 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.304 5.304 16 N -0.263 5.263 17 C 0.161 3.839 18 C 0.030 3.970 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.091 4.091 22 Br -0.056 7.056 23 C -0.087 4.087 24 C -0.080 4.080 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.275 0.725 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.843 10.279 5.184 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.185 4.185 3 C 0.010 3.990 4 N -0.166 5.166 5 C -0.192 4.192 6 S 0.378 5.622 7 C -0.684 4.684 8 H 0.123 0.877 9 C -0.133 4.133 10 N -0.513 5.513 11 Si 0.758 3.242 12 H -0.194 1.194 13 H -0.208 1.208 14 H -0.194 1.194 15 N -0.150 5.150 16 N -0.105 5.105 17 C -0.105 4.105 18 C 0.027 3.973 19 C -0.141 4.141 20 C -0.106 4.106 21 C -0.172 4.172 22 Br 0.029 6.971 23 C -0.107 4.107 24 C -0.101 4.101 25 H 0.119 0.881 26 H 0.126 0.874 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.085 0.915 31 H 0.159 0.841 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.624 10.228 5.221 23.606 hybrid contribution 0.820 -0.284 0.375 0.945 sum -19.805 9.944 5.596 22.857 Atomic orbital electron populations 1.23927 0.95435 1.02475 0.99954 1.23305 0.96277 0.98964 0.99913 1.21019 0.91108 0.97011 0.89828 1.46316 1.13245 1.45055 1.11976 1.28497 0.85570 1.01813 1.03320 1.83440 1.13902 1.59456 1.05360 1.23177 0.98147 1.42762 1.04295 0.87666 1.25066 0.99522 0.93964 0.94711 1.69937 1.35838 1.36633 1.08865 0.85962 0.80298 0.79022 0.78876 1.19390 1.20758 1.19379 1.74809 1.22359 1.17468 1.00332 1.74286 0.98004 1.12971 1.25257 1.22462 0.97453 1.06071 0.84510 1.17619 0.88954 0.94144 0.96584 1.21689 0.90931 1.00521 1.00956 1.20945 0.99252 0.94304 0.96129 1.21859 0.92273 0.99984 1.03047 1.96706 1.35744 1.76940 1.87667 1.21041 0.90272 0.99930 0.99411 1.21260 0.99321 0.93714 0.95781 0.88104 0.87367 0.85597 0.88487 0.87292 0.91497 0.84066 0.84683 0.84504 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 12.59 29.01 0.37 -1.27 16 2 C -0.17 -2.00 9.34 -36.03 -0.34 -2.34 16 3 C 0.13 1.78 5.60 -5.19 -0.03 1.75 16 4 N -0.47 -8.51 2.82 -115.31 -0.32 -8.84 16 5 C 0.18 3.99 8.06 -87.90 -0.71 3.28 16 6 S 0.15 3.48 21.54 -107.50 -2.32 1.16 16 7 C -0.54 -14.65 9.37 30.88 0.29 -14.36 16 8 H 0.11 2.98 6.92 -52.49 -0.36 2.62 16 9 C 0.08 2.05 5.49 -17.48 -0.10 1.95 16 10 N -0.88 -23.93 13.22 55.48 0.73 -23.20 16 11 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 N -0.30 -7.48 11.03 30.77 0.34 -7.14 16 16 N -0.26 -5.80 12.20 32.57 0.40 -5.41 16 17 C 0.16 2.96 7.53 -153.81 -1.16 1.80 16 18 C 0.03 0.43 5.73 -104.96 -0.60 -0.17 16 19 C -0.12 -1.40 8.40 -39.18 -0.33 -1.73 16 20 C -0.09 -0.86 9.77 -39.61 -0.39 -1.24 16 21 C -0.09 -0.93 6.23 -39.42 -0.25 -1.18 16 22 Br -0.06 -0.50 33.69 -68.01 -2.29 -2.79 16 23 C -0.09 -0.91 9.77 -39.61 -0.39 -1.29 16 24 C -0.08 -1.01 9.76 -39.18 -0.38 -1.39 16 25 H 0.10 0.73 7.12 -52.49 -0.37 0.36 16 26 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 27 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.10 1.06 6.23 -51.93 -0.32 0.73 16 29 H 0.11 1.43 8.06 -51.93 -0.42 1.01 16 30 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.14 1.53 3.16 -52.48 -0.17 1.37 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -30.75 333.07 -10.37 -41.11 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.89 Total: 0.30 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -4.01 Total: -16.17 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 1.15 Total: -44.58 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.32 Total: 1.16 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.75 -10.37 -41.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006595641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.750 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds