Wall clock time and date at job start Tue Mar 31 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00510 * 2 1 4 4 N 1.46498 * 109.47172 * 127.11509 * 3 2 1 5 5 C 1.36743 * 127.15626 * 83.57987 * 4 3 2 6 6 S 1.76204 * 126.38936 * 0.02611 * 5 4 3 7 7 C 1.76201 * 99.99856 * 179.70593 * 6 5 4 8 8 H 1.08000 * 120.00113 * 0.02562 * 7 6 5 9 9 C 1.38632 * 119.99821 * 179.97438 * 7 6 5 10 10 N 1.31655 * 120.00153 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99915 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47518 * 59.99860 * 11 9 7 13 13 H 1.48501 * 109.47044 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47036 * 299.99823 * 11 9 7 15 15 N 1.31571 * 107.22168 * 179.75732 * 5 4 3 16 16 N 1.28519 * 110.02605 * 0.24523 * 15 5 4 17 17 C 1.31504 * 109.94936 * 359.97438 * 16 15 5 18 18 C 1.47782 * 126.43905 * 180.02562 * 17 16 15 19 19 C 1.39616 * 120.13564 * 213.78709 * 18 17 16 20 20 C 1.37925 * 119.85849 * 179.76641 * 19 18 17 21 21 C 1.38460 * 120.14013 * 0.49492 * 20 19 18 22 22 Br 1.89095 * 119.86610 * 179.73886 * 21 20 19 23 23 C 1.38464 * 120.27319 * 359.76298 * 21 20 19 24 24 C 1.37920 * 120.14338 * 0.02562 * 23 21 20 25 25 H 1.08000 * 119.99739 * 357.01292 * 1 2 3 26 26 H 1.07993 * 120.00208 * 177.01486 * 1 2 3 27 27 H 1.08008 * 119.99435 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46654 * 7.11429 * 3 2 1 29 29 H 1.09001 * 109.46711 * 247.11391 * 3 2 1 30 30 H 0.96996 * 119.99688 * 180.02562 * 10 9 7 31 31 H 1.08008 * 120.07240 * 359.97438 * 19 18 17 32 32 H 1.08000 * 119.92907 * 180.23025 * 20 19 18 33 33 H 1.08007 * 119.93004 * 179.97438 * 23 21 20 34 34 H 1.07996 * 120.07348 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0296 1.3112 1.1014 5 6 4.2858 0.7710 1.1012 6 16 5.0604 -0.0735 -0.2373 7 6 6.6163 -0.4510 0.4985 8 1 6.8211 -0.1473 1.5145 9 6 7.5771 -1.1389 -0.2263 10 7 7.3270 -1.5105 -1.4643 11 14 9.2264 -1.5398 0.5540 12 1 9.0127 -2.3833 1.7574 13 1 10.0700 -2.2753 -0.4220 14 1 9.9072 -0.2800 0.9471 15 7 4.8104 1.0045 2.2850 16 7 3.9719 1.6440 3.0196 17 6 2.8608 1.8583 2.3497 18 6 1.6587 2.5608 2.8451 19 6 0.3895 2.1629 2.4208 20 6 -0.7288 2.8195 2.8906 21 6 -0.5941 3.8778 3.7732 22 35 -2.1322 4.7772 4.4066 23 6 0.6621 4.2806 4.1935 24 6 1.7879 3.6294 3.7344 25 1 -0.5400 0.9341 0.0487 26 1 -0.5400 -0.9340 -0.0487 27 1 1.8500 -0.9354 -0.0004 28 1 1.3622 2.1296 0.1273 29 1 2.5914 1.4198 -0.9468 30 1 7.9992 -1.9921 -1.9713 31 1 0.2834 1.3405 1.7288 32 1 -1.7113 2.5102 2.5660 33 1 0.7608 5.1071 4.8818 34 1 2.7672 3.9443 4.0634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006595641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:09 Heat of formation + Delta-G solvation = 105.032124 kcal Electronic energy + Delta-G solvation = -21042.443866 eV Core-core repulsion = 17727.859922 eV Total energy + Delta-G solvation = -3314.583944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 364.989 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.69066 -40.20739 -37.31277 -34.76474 -34.16201 -33.71206 -32.20340 -31.74210 -29.60646 -27.85155 -27.73732 -24.39026 -24.35751 -23.09793 -21.82705 -21.19184 -19.90782 -18.71686 -17.59515 -17.27914 -17.08737 -16.95293 -16.60046 -16.12640 -15.64676 -15.10707 -14.84761 -14.61985 -14.53978 -14.38205 -13.59637 -13.42656 -13.06386 -13.01758 -12.69005 -12.55979 -12.52236 -12.25317 -12.15410 -12.01535 -11.60753 -11.52662 -11.29120 -11.13456 -10.87430 -10.84433 -10.55551 -10.15924 -9.68195 -8.68252 -8.53935 -6.32212 -0.43294 0.20377 0.54344 0.63084 0.82179 1.08914 1.36177 1.40691 1.49152 1.79042 1.87689 2.11759 2.52540 2.87142 2.99304 3.16144 3.53775 3.68675 3.74861 3.82197 4.09328 4.13636 4.18844 4.38934 4.46122 4.50658 4.65180 4.86549 4.88667 4.98946 5.04886 5.07748 5.34000 5.45133 5.50584 5.57083 5.60207 5.85788 6.19910 6.94171 7.67746 8.55077 Molecular weight = 364.99amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002283 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.595954 B =12259.272959 C =13199.432244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.203 4.203 3 C 0.126 3.874 4 N -0.459 5.459 5 C 0.162 3.838 6 S 0.132 5.868 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.035 3.965 10 N -0.902 5.902 11 Si 0.992 3.008 12 H -0.269 1.269 13 H -0.264 1.264 14 H -0.269 1.269 15 N -0.346 5.346 16 N -0.311 5.311 17 C 0.194 3.806 18 C -0.005 4.005 19 C -0.110 4.110 20 C -0.078 4.078 21 C -0.087 4.087 22 Br -0.035 7.035 23 C -0.082 4.082 24 C -0.083 4.083 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.281 0.719 31 H 0.150 0.850 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.353 11.411 5.593 27.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.223 4.223 3 C 0.006 3.994 4 N -0.154 5.154 5 C -0.211 4.211 6 S 0.364 5.636 7 C -0.711 4.711 8 H 0.102 0.898 9 C -0.172 4.172 10 N -0.538 5.538 11 Si 0.814 3.186 12 H -0.194 1.194 13 H -0.189 1.189 14 H -0.193 1.193 15 N -0.191 5.191 16 N -0.151 5.151 17 C -0.074 4.074 18 C -0.008 4.008 19 C -0.130 4.130 20 C -0.097 4.097 21 C -0.167 4.167 22 Br 0.050 6.950 23 C -0.102 4.102 24 C -0.104 4.104 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.117 0.883 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.176 0.824 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.183 11.382 5.637 27.316 hybrid contribution 1.502 -0.443 0.379 1.611 sum -22.682 10.940 6.016 25.891 Atomic orbital electron populations 1.24275 0.94038 1.04645 0.94596 1.23020 0.97330 0.97083 1.04836 1.21426 0.90756 0.99133 0.88131 1.46631 1.12473 1.43306 1.12981 1.28122 0.87340 1.03054 1.02547 1.83043 1.12883 1.61414 1.06301 1.23293 1.00250 1.43702 1.03896 0.89766 1.25871 1.02592 0.93526 0.95162 1.69991 1.37017 1.37060 1.09730 0.85086 0.76432 0.78797 0.78279 1.19400 1.18853 1.19345 1.74674 1.24370 1.18538 1.01533 1.74191 0.99545 1.15222 1.26150 1.23252 0.97463 1.02979 0.83736 1.17718 0.88328 0.95725 0.99048 1.21746 0.90127 1.00528 1.00623 1.21261 0.99918 0.93397 0.95138 1.22123 0.92843 0.99616 1.02109 1.96759 1.34284 1.76511 1.87406 1.21226 0.89688 1.00024 0.99249 1.21257 0.99950 0.93695 0.95516 0.85200 0.85617 0.88319 0.85331 0.87659 0.90942 0.83257 0.81482 0.82386 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 12.59 67.78 0.85 -1.15 16 2 C -0.20 -4.71 9.34 25.65 0.24 -4.47 16 3 C 0.13 3.29 5.60 85.63 0.48 3.77 16 4 N -0.46 -17.04 2.82 -518.72 -1.46 -18.50 16 5 C 0.16 7.70 8.06 179.40 1.45 9.14 16 6 S 0.13 6.69 21.54 -56.49 -1.22 5.47 16 7 C -0.56 -32.47 9.37 67.91 0.64 -31.83 16 8 H 0.08 5.10 6.92 -2.91 -0.02 5.08 16 9 C 0.04 1.93 5.49 84.81 0.47 2.40 16 10 N -0.90 -50.44 13.22 21.62 0.29 -50.16 16 11 Si 0.99 44.02 29.55 68.60 2.03 46.04 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 N -0.35 -18.09 11.03 -56.57 -0.62 -18.71 16 16 N -0.31 -14.33 12.20 -50.87 -0.62 -14.95 16 17 C 0.19 7.22 7.53 136.20 1.03 8.24 16 18 C 0.00 -0.13 5.73 -20.09 -0.11 -0.25 16 19 C -0.11 -2.19 8.40 22.53 0.19 -2.00 16 20 C -0.08 -1.18 9.77 22.25 0.22 -0.96 16 21 C -0.09 -1.41 6.23 22.38 0.14 -1.27 16 22 Br -0.04 -0.48 33.69 -20.37 -0.69 -1.17 16 23 C -0.08 -1.48 9.77 22.25 0.22 -1.26 16 24 C -0.08 -1.99 9.76 22.53 0.22 -1.77 16 25 H 0.13 1.15 7.12 -2.91 -0.02 1.13 16 26 H 0.13 1.45 8.06 -2.91 -0.02 1.43 16 27 H 0.10 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.13 2.47 6.23 -2.39 -0.01 2.45 16 29 H 0.11 2.80 8.06 -2.39 -0.02 2.78 16 30 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.15 2.67 3.16 -2.91 -0.01 2.66 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 34 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -71.49 333.07 4.87 -66.62 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.15 Total: 6.76 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 6.01 Total: -21.41 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -2.42 Total: -102.32 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.22 Total: 5.47 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.17 kcal Total: -71.49 4.87 -66.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006595641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.653 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds