Wall clock time and date at job start Tue Mar 31 2020 07:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86796 * 119.99813 * 2 1 4 4 H 1.48503 * 109.46828 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47170 * 300.00190 * 3 2 1 6 6 H 1.48504 * 109.46909 * 60.00602 * 3 2 1 7 7 C 1.40090 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99960 * 0.27933 * 7 2 1 10 10 O 1.22063 * 120.00037 * 359.71788 * 9 7 2 11 11 N 1.34236 * 120.00069 * 179.72373 * 9 7 2 12 12 C 1.32538 * 120.00211 * 179.97438 * 11 9 7 13 13 S 1.76734 * 125.29943 * 0.02562 * 12 11 9 14 14 C 1.81904 * 95.98348 * 180.16697 * 13 12 11 15 15 H 1.09002 * 110.12076 * 116.63967 * 14 13 12 16 16 C 1.53999 * 109.56072 * 237.92076 * 14 13 12 17 17 S 1.83850 * 102.63320 * 142.46598 * 16 14 13 18 18 O 1.42098 * 109.81557 * 77.04428 * 17 16 14 19 19 O 1.42104 * 109.81079 * 211.36373 * 17 16 14 20 20 C 1.83752 * 94.23541 * 324.22136 * 17 16 14 21 21 C 1.52746 * 104.51190 * 358.37006 * 14 13 12 22 22 H 1.09000 * 107.88174 * 120.44643 * 21 14 13 23 23 N 1.34992 * 125.30171 * 179.71879 * 12 11 9 24 24 C 1.39754 * 120.87056 * 1.55687 * 23 12 11 25 25 C 1.38931 * 120.07432 * 292.75968 * 24 23 12 26 26 C 1.38094 * 119.92230 * 179.73992 * 25 24 23 27 27 C 1.38297 * 120.07565 * 0.52856 * 26 25 24 28 28 C 1.38303 * 120.15408 * 359.72171 * 27 26 25 29 29 C 1.38097 * 120.06895 * 0.02562 * 28 27 26 30 30 H 0.96997 * 120.00074 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.77414 * 260.75296 * 16 14 13 32 32 H 1.09006 * 110.77485 * 23.98989 * 16 14 13 33 33 H 1.08997 * 110.67831 * 153.07307 * 20 17 16 34 34 H 1.09001 * 110.67477 * 276.23630 * 20 17 16 35 35 H 1.08002 * 120.03972 * 359.97438 * 25 24 23 36 36 H 1.08000 * 119.96304 * 180.23011 * 26 25 24 37 37 H 1.08004 * 119.92691 * 179.70730 * 27 26 25 38 38 H 1.08002 * 119.96358 * 180.02562 * 28 27 26 39 39 H 1.08003 * 120.03103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8816 2.3964 -1.2124 6 1 1.8817 2.3963 1.2126 7 6 2.0069 -1.2132 -0.0005 8 1 3.0869 -1.2132 -0.0010 9 6 1.2750 -2.4808 -0.0073 10 8 0.0544 -2.4808 -0.0072 11 7 1.9462 -3.6433 -0.0134 12 6 1.2835 -4.7911 -0.0190 13 16 -0.4762 -4.9544 -0.0199 14 6 -0.4979 -6.7733 -0.0234 15 1 -0.9615 -7.1446 0.8905 16 6 -1.2743 -7.2773 -1.2542 17 16 -0.3139 -8.7630 -1.7547 18 8 -0.6157 -9.8467 -0.8865 19 8 -0.3888 -8.9328 -3.1636 20 6 1.3104 -8.0343 -1.2997 21 6 0.9756 -7.1736 -0.0658 22 1 1.1859 -7.7706 0.8216 23 7 1.8476 -6.0175 -0.0308 24 6 3.2368 -6.1681 -0.0058 25 6 4.0011 -5.7599 -1.0918 26 6 5.3740 -5.9052 -1.0614 27 6 5.9873 -6.4664 0.0438 28 6 5.2291 -6.8787 1.1245 29 6 3.8561 -6.7315 1.1029 30 1 -0.4850 0.8400 0.0004 31 1 -2.2943 -7.5495 -0.9831 32 1 -1.2731 -6.5278 -2.0457 33 1 2.0247 -8.8164 -1.0426 34 1 1.6935 -7.4125 -2.1089 35 1 3.5223 -5.3259 -1.9572 36 1 5.9691 -5.5847 -1.9038 37 1 7.0608 -6.5833 0.0630 38 1 5.7112 -7.3162 1.9862 39 1 3.2646 -7.0540 1.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006659945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:40 Heat of formation + Delta-G solvation = -21.698245 kcal Electronic energy + Delta-G solvation = -28465.869951 eV Core-core repulsion = 24400.376390 eV Total energy + Delta-G solvation = -4065.493561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.38217 -38.10001 -37.55968 -37.25534 -36.27048 -34.61837 -32.96662 -31.91067 -30.88810 -30.16544 -29.60762 -26.90317 -25.72985 -24.07696 -22.56935 -22.09625 -20.80301 -19.58378 -19.17303 -18.01072 -17.08909 -16.84158 -16.51184 -16.26275 -15.93769 -15.88143 -15.76333 -15.21246 -14.82436 -14.58773 -14.31549 -14.07817 -13.53479 -13.40097 -13.36902 -13.14730 -13.02286 -12.59937 -12.44394 -12.32411 -12.24732 -12.02210 -11.71805 -11.46064 -11.43438 -11.25140 -11.18918 -10.87666 -10.72860 -10.69095 -10.44226 -10.03721 -9.09419 -8.91020 -8.86525 -8.74096 -7.92766 -7.66375 -7.53785 -6.45813 -4.84770 -0.26792 1.27533 1.45186 1.68000 2.08943 2.12725 2.38309 2.89837 3.04228 3.10826 3.17086 3.25648 3.60352 3.74479 3.89948 3.97429 4.15282 4.24861 4.48154 4.55076 4.67241 4.95641 4.98092 5.03742 5.14375 5.26374 5.33998 5.40695 5.48880 5.52270 5.60918 5.72542 5.98238 6.05153 6.37134 6.47059 6.54103 6.72758 6.98159 7.20867 7.39286 8.03242 8.39326 8.73541 8.74556 10.25917 10.45943 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.003885 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.982923 B = 7204.582495 C = 9279.373329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.470 4.470 8 H 0.080 0.920 9 C 0.484 3.516 10 O -0.550 6.550 11 N -0.555 5.555 12 C 0.404 3.596 13 S 0.011 5.989 14 C -0.162 4.162 15 H 0.137 0.863 16 C -0.548 4.548 17 S 2.383 3.617 18 O -0.927 6.927 19 O -0.931 6.931 20 C -0.595 4.595 21 C 0.165 3.835 22 H 0.104 0.896 23 N -0.549 5.549 24 C 0.167 3.833 25 C -0.096 4.096 26 C -0.108 4.108 27 C -0.123 4.123 28 C -0.112 4.112 29 C -0.123 4.123 30 H 0.274 0.726 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -16.195 -0.571 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.505 4.505 8 H 0.098 0.902 9 C 0.292 3.708 10 O -0.438 6.438 11 N -0.301 5.301 12 C 0.025 3.975 13 S 0.238 5.762 14 C -0.291 4.291 15 H 0.155 0.845 16 C -0.679 4.679 17 S 2.565 3.435 18 O -0.924 6.924 19 O -0.928 6.928 20 C -0.726 4.726 21 C 0.059 3.941 22 H 0.122 0.878 23 N -0.266 5.266 24 C 0.074 3.926 25 C -0.116 4.116 26 C -0.127 4.127 27 C -0.142 4.142 28 C -0.131 4.131 29 C -0.143 4.143 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.626 -15.852 -0.944 16.289 hybrid contribution 1.119 0.879 0.437 1.489 sum 4.745 -14.973 -0.507 15.715 Atomic orbital electron populations 1.70003 1.07308 1.28092 1.32054 1.25947 0.94854 1.00994 0.93038 0.86147 0.80685 0.80663 0.78484 1.18337 1.19820 1.19816 1.20953 0.94421 0.88090 1.47062 0.90172 1.19208 0.86448 0.85772 0.79370 1.90518 1.15623 1.84788 1.52900 1.69250 1.37240 0.97052 1.26534 1.24655 0.91696 0.88700 0.92485 1.88780 1.04267 0.92871 1.90246 1.24404 0.94062 1.08812 1.01782 0.84540 1.30551 1.12032 1.19346 1.05993 1.09504 0.80047 0.78287 0.75666 1.93638 1.82127 1.48911 1.67719 1.93630 1.84766 1.85911 1.28473 1.30978 1.22358 1.11538 1.07686 1.20828 0.88581 0.86548 0.98149 0.87809 1.43447 1.03697 1.01869 1.77560 1.17334 0.81451 0.99888 0.93915 1.21272 0.94004 0.98615 0.97707 1.21017 0.94023 0.99016 0.98635 1.21145 0.99755 0.99319 0.93964 1.20941 0.93131 1.00455 0.98559 1.21193 0.95050 1.01341 0.96722 0.91532 0.83511 0.83128 0.83687 0.83485 0.85791 0.85773 0.86105 0.85905 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.35 11.82 55.55 0.66 -20.69 16 2 C 0.07 1.99 5.50 -17.36 -0.10 1.89 16 3 Si 0.92 19.60 29.56 -169.99 -5.02 14.58 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 7 C -0.47 -13.41 9.63 -35.62 -0.34 -13.76 16 8 H 0.08 2.19 7.85 -52.49 -0.41 1.78 16 9 C 0.48 13.94 7.67 -13.23 -0.10 13.83 16 10 O -0.55 -16.73 12.32 4.86 0.06 -16.67 16 11 N -0.56 -13.76 9.86 -13.33 -0.13 -13.89 16 12 C 0.40 8.25 7.72 -88.70 -0.68 7.56 16 13 S 0.01 0.21 19.29 -107.50 -2.07 -1.87 16 14 C -0.16 -1.88 3.66 -26.34 -0.10 -1.98 16 15 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.55 -5.07 6.93 37.68 0.26 -4.81 16 17 S 2.38 22.35 6.07 -107.50 -0.65 21.70 16 18 O -0.93 -10.80 18.16 -57.67 -1.05 -11.85 16 19 O -0.93 -11.87 18.17 -57.67 -1.05 -12.91 16 20 C -0.60 -5.34 6.42 37.75 0.24 -5.10 16 21 C 0.17 1.88 3.09 -68.35 -0.21 1.67 16 22 H 0.10 0.94 8.11 -51.93 -0.42 0.52 16 23 N -0.55 -8.48 2.62 -107.81 -0.28 -8.76 16 24 C 0.17 2.45 4.44 -83.73 -0.37 2.08 16 25 C -0.10 -1.38 9.61 -39.38 -0.38 -1.76 16 26 C -0.11 -1.31 10.04 -39.61 -0.40 -1.71 16 27 C -0.12 -1.34 10.04 -39.54 -0.40 -1.74 16 28 C -0.11 -1.23 10.04 -39.61 -0.40 -1.63 16 29 C -0.12 -1.56 9.83 -39.38 -0.39 -1.95 16 30 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 31 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.15 1.45 7.80 -51.93 -0.40 1.05 16 33 H 0.14 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.15 1.36 8.08 -51.93 -0.42 0.94 16 35 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 358.68 15.07 5.41 5.41 Total: -1.00 -38.91 358.68 -11.67 -50.59 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.17 Total: 1.77 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -3.36 Total: -7.40 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.24 Total: -43.34 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -2.04 Total: -41.43 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 22.56 SS G_CDS: -2.73 Total: 19.83 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -38.91 -11.67 -50.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.887 kcal (2) G-P(sol) polarization free energy of solvation -38.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds