Wall clock time and date at job start Tue Mar 31 2020 07:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86796 * 119.99813 * 2 1 4 4 H 1.48503 * 109.46828 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47170 * 300.00190 * 3 2 1 6 6 H 1.48504 * 109.46909 * 60.00602 * 3 2 1 7 7 C 1.40090 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.46371 * 119.99960 * 0.27933 * 7 2 1 10 10 O 1.22063 * 120.00037 * 359.71788 * 9 7 2 11 11 N 1.34236 * 120.00069 * 179.72373 * 9 7 2 12 12 C 1.32538 * 120.00211 * 179.97438 * 11 9 7 13 13 S 1.76734 * 125.29943 * 0.02562 * 12 11 9 14 14 C 1.81904 * 95.98348 * 180.16697 * 13 12 11 15 15 H 1.09002 * 110.12076 * 116.63967 * 14 13 12 16 16 C 1.53999 * 109.56072 * 237.92076 * 14 13 12 17 17 S 1.83850 * 102.63320 * 142.46598 * 16 14 13 18 18 O 1.42098 * 109.81557 * 77.04428 * 17 16 14 19 19 O 1.42104 * 109.81079 * 211.36373 * 17 16 14 20 20 C 1.83752 * 94.23541 * 324.22136 * 17 16 14 21 21 C 1.52746 * 104.51190 * 358.37006 * 14 13 12 22 22 H 1.09000 * 107.88174 * 120.44643 * 21 14 13 23 23 N 1.34992 * 125.30171 * 179.71879 * 12 11 9 24 24 C 1.39754 * 120.87056 * 1.55687 * 23 12 11 25 25 C 1.38931 * 120.07432 * 292.75968 * 24 23 12 26 26 C 1.38094 * 119.92230 * 179.73992 * 25 24 23 27 27 C 1.38297 * 120.07565 * 0.52856 * 26 25 24 28 28 C 1.38303 * 120.15408 * 359.72171 * 27 26 25 29 29 C 1.38097 * 120.06895 * 0.02562 * 28 27 26 30 30 H 0.96997 * 120.00074 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.77414 * 260.75296 * 16 14 13 32 32 H 1.09006 * 110.77485 * 23.98989 * 16 14 13 33 33 H 1.08997 * 110.67831 * 153.07307 * 20 17 16 34 34 H 1.09001 * 110.67477 * 276.23630 * 20 17 16 35 35 H 1.08002 * 120.03972 * 359.97438 * 25 24 23 36 36 H 1.08000 * 119.96304 * 180.23011 * 26 25 24 37 37 H 1.08004 * 119.92691 * 179.70730 * 27 26 25 38 38 H 1.08002 * 119.96358 * 180.02562 * 28 27 26 39 39 H 1.08003 * 120.03103 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 -0.0006 5 1 1.8816 2.3964 -1.2124 6 1 1.8817 2.3963 1.2126 7 6 2.0069 -1.2132 -0.0005 8 1 3.0869 -1.2132 -0.0010 9 6 1.2750 -2.4808 -0.0073 10 8 0.0544 -2.4808 -0.0072 11 7 1.9462 -3.6433 -0.0134 12 6 1.2835 -4.7911 -0.0190 13 16 -0.4762 -4.9544 -0.0199 14 6 -0.4979 -6.7733 -0.0234 15 1 -0.9615 -7.1446 0.8905 16 6 -1.2743 -7.2773 -1.2542 17 16 -0.3139 -8.7630 -1.7547 18 8 -0.6157 -9.8467 -0.8865 19 8 -0.3888 -8.9328 -3.1636 20 6 1.3104 -8.0343 -1.2997 21 6 0.9756 -7.1736 -0.0658 22 1 1.1859 -7.7706 0.8216 23 7 1.8476 -6.0175 -0.0308 24 6 3.2368 -6.1681 -0.0058 25 6 4.0011 -5.7599 -1.0918 26 6 5.3740 -5.9052 -1.0614 27 6 5.9873 -6.4664 0.0438 28 6 5.2291 -6.8787 1.1245 29 6 3.8561 -6.7315 1.1029 30 1 -0.4850 0.8400 0.0004 31 1 -2.2943 -7.5495 -0.9831 32 1 -1.2731 -6.5278 -2.0457 33 1 2.0247 -8.8164 -1.0426 34 1 1.6935 -7.4125 -2.1089 35 1 3.5223 -5.3259 -1.9572 36 1 5.9691 -5.5847 -1.9038 37 1 7.0608 -6.5833 0.0630 38 1 5.7112 -7.3162 1.9862 39 1 3.2646 -7.0540 1.9470 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006659945.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:39 Heat of formation + Delta-G solvation = -51.524831 kcal Electronic energy + Delta-G solvation = -28467.163329 eV Core-core repulsion = 24400.376390 eV Total energy + Delta-G solvation = -4066.786939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.53867 -39.47999 -39.03078 -38.21981 -37.19977 -35.91890 -34.84426 -33.55053 -31.84747 -31.06434 -30.78011 -28.84437 -26.71495 -25.50066 -23.54311 -23.18615 -22.33822 -20.78931 -20.05292 -19.47412 -18.30869 -18.14278 -17.76162 -17.52367 -17.15747 -16.94290 -16.86129 -16.50364 -16.13134 -15.91240 -15.60123 -15.13280 -15.06854 -14.87602 -14.32720 -14.27803 -14.15568 -13.65133 -13.44364 -13.32334 -13.25881 -13.18746 -13.12187 -12.90479 -12.78393 -12.65839 -12.47879 -12.19567 -12.08623 -11.98029 -11.73780 -11.36170 -11.02803 -10.50042 -10.03217 -9.85102 -9.62088 -9.24339 -9.14047 -8.43966 -6.96195 -1.11539 0.16531 0.28725 0.48156 0.52785 1.03467 1.29647 1.35126 1.38291 1.53410 1.71363 2.19974 2.38537 2.52492 2.74000 2.78147 2.90023 3.29238 3.34215 3.66848 3.73711 3.86658 4.03044 4.04350 4.09241 4.28416 4.33356 4.42421 4.56005 4.57835 4.65938 4.74017 4.75929 5.11440 5.18393 5.35945 5.45940 5.61025 5.67098 5.77722 5.96493 6.17572 6.57338 6.70859 6.79907 8.29049 8.49852 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.003885 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2790.982923 B = 7204.582495 C = 9279.373329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.025 3.975 3 Si 1.001 2.999 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.261 1.261 7 C -0.517 4.517 8 H 0.077 0.923 9 C 0.476 3.524 10 O -0.589 6.589 11 N -0.603 5.603 12 C 0.419 3.581 13 S -0.059 6.059 14 C -0.135 4.135 15 H 0.172 0.828 16 C -0.552 4.552 17 S 2.425 3.575 18 O -0.939 6.939 19 O -0.962 6.962 20 C -0.587 4.587 21 C 0.146 3.854 22 H 0.144 0.856 23 N -0.533 5.533 24 C 0.136 3.864 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.108 4.108 29 C -0.128 4.128 30 H 0.281 0.719 31 H 0.178 0.822 32 H 0.145 0.855 33 H 0.177 0.823 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -18.844 0.353 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.176 1.176 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.552 4.552 8 H 0.095 0.905 9 C 0.283 3.717 10 O -0.479 6.479 11 N -0.352 5.352 12 C 0.040 3.960 13 S 0.171 5.829 14 C -0.264 4.264 15 H 0.190 0.810 16 C -0.682 4.682 17 S 2.608 3.392 18 O -0.936 6.936 19 O -0.959 6.959 20 C -0.717 4.717 21 C 0.041 3.959 22 H 0.161 0.839 23 N -0.247 5.247 24 C 0.044 3.956 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.126 4.126 29 C -0.148 4.148 30 H 0.091 0.909 31 H 0.196 0.804 32 H 0.163 0.837 33 H 0.195 0.805 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.371 -18.593 -0.029 19.353 hybrid contribution 0.577 1.259 0.144 1.392 sum 5.948 -17.334 0.115 18.327 Atomic orbital electron populations 1.70121 1.09363 1.29623 1.33652 1.27079 0.95716 1.04903 0.91457 0.84921 0.79093 0.74874 0.79173 1.17610 1.18561 1.18521 1.21307 0.94556 0.89591 1.49729 0.90486 1.19544 0.86332 0.87461 0.78408 1.90498 1.16705 1.86787 1.53911 1.69143 1.37230 0.97245 1.31602 1.24948 0.92299 0.89497 0.89245 1.88832 1.03927 1.00287 1.89865 1.24600 0.95341 1.01725 1.04771 0.81019 1.30635 1.13731 1.19090 1.04773 1.08285 0.79373 0.77316 0.74242 1.93621 1.82466 1.49673 1.67859 1.93596 1.85308 1.86368 1.30594 1.30975 1.22781 1.11628 1.06311 1.21385 0.87654 0.85650 1.01193 0.83887 1.43765 1.04957 1.00994 1.75008 1.17597 0.80840 1.01967 0.95225 1.21263 0.95318 0.99724 0.97491 1.21282 0.93140 0.98895 0.99989 1.21559 1.01445 0.97494 0.92962 1.21363 0.92415 0.99342 0.99494 1.21410 0.96161 1.00998 0.96183 0.90854 0.80398 0.83692 0.80533 0.83912 0.88082 0.84188 0.82892 0.82646 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -48.20 11.82 21.84 0.26 -47.95 16 2 C 0.03 1.43 5.50 85.32 0.47 1.90 16 3 Si 1.00 41.60 29.56 68.60 2.03 43.62 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.52 -31.39 9.63 24.84 0.24 -31.15 16 8 H 0.08 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.48 29.34 7.67 86.44 0.66 30.00 16 10 O -0.59 -38.40 12.32 -5.52 -0.07 -38.46 16 11 N -0.60 -31.74 9.86 -314.45 -3.10 -34.84 16 12 C 0.42 17.75 7.72 179.68 1.39 19.13 16 13 S -0.06 -2.27 19.29 -56.49 -1.09 -3.36 16 14 C -0.13 -2.84 3.66 30.85 0.11 -2.73 16 15 H 0.17 2.51 8.14 -2.39 -0.02 2.49 16 16 C -0.55 -9.00 6.93 72.32 0.50 -8.50 16 17 S 2.43 38.85 6.07 -56.49 -0.34 38.50 16 18 O -0.94 -18.47 18.16 -127.53 -2.32 -20.79 16 19 O -0.96 -22.84 18.17 -127.53 -2.32 -25.16 16 20 C -0.59 -8.91 6.42 72.36 0.46 -8.45 16 21 C 0.15 2.94 3.09 45.60 0.14 3.09 16 22 H 0.14 1.93 8.11 -2.39 -0.02 1.91 16 23 N -0.53 -16.15 2.62 -494.99 -1.30 -17.45 16 24 C 0.14 3.87 4.44 38.21 0.17 4.04 16 25 C -0.12 -3.42 9.61 22.40 0.22 -3.20 16 26 C -0.11 -2.62 10.04 22.25 0.22 -2.39 16 27 C -0.12 -2.14 10.04 22.30 0.22 -1.92 16 28 C -0.11 -1.97 10.04 22.25 0.22 -1.75 16 29 C -0.13 -2.91 9.83 22.40 0.22 -2.69 16 30 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 31 H 0.18 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.14 2.70 7.80 -2.38 -0.02 2.68 16 33 H 0.18 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.14 2.45 8.08 -2.39 -0.02 2.43 16 35 H 0.10 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 39 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -93.09 358.68 -1.89 -94.99 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.10 Total: 15.49 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 5.25 Total: -4.61 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -4.14 Total: -100.23 kcal Atomic # 8 Polarization: -79.71 SS G_CDS: -4.70 Total: -84.41 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 36.58 SS G_CDS: -1.43 Total: 35.15 kcal Total: -93.09 -1.89 -94.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659945.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.462 kcal (2) G-P(sol) polarization free energy of solvation -93.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds