Wall clock time and date at job start Tue Mar 31 2020 07:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47278 * 299.99864 * 3 2 1 6 6 H 1.48501 * 109.47269 * 60.00464 * 3 2 1 7 7 C 1.40096 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.46366 * 120.00202 * 359.97438 * 7 2 1 10 10 O 1.22059 * 120.00194 * 0.02562 * 9 7 2 11 11 N 1.34230 * 120.00320 * 180.02562 * 9 7 2 12 12 C 1.32535 * 120.00430 * 180.02562 * 11 9 7 13 13 S 1.79855 * 126.27209 * 0.64684 * 12 11 9 14 14 C 1.82376 * 92.64044 * 200.78518 * 13 12 11 15 15 H 1.09000 * 112.78446 * 83.17941 * 14 13 12 16 16 C 1.52898 * 114.70686 * 213.85567 * 14 13 12 17 17 S 1.83007 * 104.66871 * 137.64833 * 16 14 13 18 18 O 1.42095 * 109.78250 * 240.86894 * 17 16 14 19 19 O 1.42105 * 109.11092 * 107.62878 * 17 16 14 20 20 C 1.84567 * 96.86177 * 354.34459 * 17 16 14 21 21 C 1.50247 * 100.67385 * 336.79056 * 20 17 16 22 22 H 1.08994 * 103.27002 * 300.14990 * 21 20 17 23 23 N 1.38613 * 126.09986 * 179.97438 * 12 11 9 24 24 C 1.39760 * 123.08138 * 4.39826 * 23 12 11 25 25 C 1.38936 * 120.07281 * 66.64145 * 24 23 12 26 26 C 1.38091 * 119.92087 * 179.74610 * 25 24 23 27 27 C 1.38302 * 120.07813 * 0.53001 * 26 25 24 28 28 C 1.38300 * 120.14997 * 359.74862 * 27 26 25 29 29 C 1.38101 * 120.07528 * 359.97438 * 28 27 26 30 30 H 0.96998 * 120.00364 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.47236 * 257.08555 * 16 14 13 32 32 H 1.09002 * 110.47276 * 19.69450 * 16 14 13 33 33 H 1.09002 * 111.18042 * 218.93793 * 20 17 16 34 34 H 1.09000 * 111.21594 * 94.65820 * 20 17 16 35 35 H 1.08001 * 120.04136 * 0.02562 * 25 24 23 36 36 H 1.08001 * 119.96534 * 180.29955 * 26 25 24 37 37 H 1.07994 * 119.92846 * 179.71863 * 27 26 25 38 38 H 1.07997 * 119.96087 * 179.97438 * 28 27 26 39 39 H 1.07998 * 120.03454 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2126 7 6 2.0068 -1.2133 -0.0005 8 1 3.0868 -1.2133 -0.0001 9 6 1.2750 -2.4809 -0.0005 10 8 0.0544 -2.4809 -0.0005 11 7 1.9460 -3.6434 -0.0005 12 6 1.2834 -4.7912 -0.0011 13 16 -0.5043 -4.9877 -0.0182 14 6 -0.4084 -6.6864 0.6386 15 1 -0.3153 -6.7146 1.7242 16 6 -1.4879 -7.6352 0.1169 17 16 -0.6038 -9.2009 -0.2235 18 8 -0.7158 -9.5266 -1.6021 19 8 -0.9606 -10.1605 0.7620 20 6 1.0973 -8.5730 0.1211 21 6 0.9004 -7.1001 -0.1007 22 1 0.5725 -7.0450 -1.1387 23 7 1.8450 -6.0584 -0.0016 24 6 3.2215 -6.2828 0.0881 25 6 3.9052 -5.9591 1.2535 26 6 5.2644 -6.1871 1.3406 27 6 5.9470 -6.7267 0.2656 28 6 5.2706 -7.0447 -0.8980 29 6 3.9103 -6.8247 -0.9899 30 1 -0.4850 0.8400 0.0004 31 1 -2.2628 -7.7817 0.8695 32 1 -1.9201 -7.2500 -0.8067 33 1 1.8193 -8.9843 -0.5843 34 1 1.3934 -8.7802 1.1494 35 1 3.3735 -5.5340 2.0919 36 1 5.7957 -5.9402 2.2479 37 1 7.0108 -6.8997 0.3348 38 1 5.8067 -7.4656 -1.7357 39 1 3.3828 -7.0729 -1.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006659947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:45 Heat of formation + Delta-G solvation = -7.962425 kcal Electronic energy + Delta-G solvation = -28292.085698 eV Core-core repulsion = 24227.187767 eV Total energy + Delta-G solvation = -4064.897931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -40.39954 -38.29057 -37.56202 -37.37556 -36.37276 -34.78695 -33.03396 -31.95007 -30.93201 -30.29989 -29.86176 -26.93353 -25.30695 -23.81486 -22.74236 -22.25296 -20.71758 -19.69142 -19.03522 -18.04443 -17.47831 -16.97353 -16.76939 -16.13837 -15.91935 -15.79871 -15.43637 -15.31054 -15.11754 -14.55278 -14.36129 -14.12099 -13.79944 -13.41438 -13.35558 -13.14988 -12.73777 -12.59922 -12.56591 -12.44349 -12.35946 -12.14243 -11.63432 -11.51567 -11.35186 -11.27068 -11.15416 -11.02394 -10.77762 -10.58796 -10.44347 -10.05147 -9.12550 -9.00100 -8.92053 -8.78515 -8.01579 -7.81106 -7.34146 -6.47524 -4.88452 -0.41820 1.23434 1.41868 1.59338 1.96376 1.98162 2.32851 2.91452 3.03005 3.09558 3.15855 3.19643 3.59963 3.74500 3.81718 3.94748 4.02350 4.16482 4.45871 4.48685 4.57351 4.92767 4.96083 5.01985 5.10984 5.16514 5.26210 5.39956 5.43854 5.50812 5.56641 5.68406 5.91513 6.01878 6.35611 6.44059 6.50845 6.75124 6.90769 7.17524 7.39009 7.99304 8.32360 8.67849 8.70619 10.22344 10.42326 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.003708 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.492496 B = 7548.635562 C = 9780.086124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.072 3.928 3 Si 0.918 3.082 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.468 4.468 8 H 0.081 0.919 9 C 0.479 3.521 10 O -0.547 6.547 11 N -0.534 5.534 12 C 0.414 3.586 13 S -0.026 6.026 14 C -0.149 4.149 15 H 0.129 0.871 16 C -0.556 4.556 17 S 2.395 3.605 18 O -0.922 6.922 19 O -0.927 6.927 20 C -0.564 4.564 21 C 0.140 3.860 22 H 0.061 0.939 23 N -0.539 5.539 24 C 0.167 3.833 25 C -0.102 4.102 26 C -0.108 4.108 27 C -0.123 4.123 28 C -0.112 4.112 29 C -0.120 4.120 30 H 0.275 0.725 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.901 -16.661 1.477 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.150 4.150 3 Si 0.741 3.259 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.502 4.502 8 H 0.099 0.901 9 C 0.287 3.713 10 O -0.434 6.434 11 N -0.276 5.276 12 C 0.035 3.965 13 S 0.201 5.799 14 C -0.279 4.279 15 H 0.147 0.853 16 C -0.687 4.687 17 S 2.575 3.425 18 O -0.919 6.919 19 O -0.924 6.924 20 C -0.693 4.693 21 C 0.030 3.970 22 H 0.079 0.921 23 N -0.256 5.256 24 C 0.074 3.926 25 C -0.122 4.122 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.130 4.130 29 C -0.140 4.140 30 H 0.086 0.914 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.539 -16.320 0.825 16.720 hybrid contribution 1.161 1.003 0.627 1.658 sum 4.700 -15.316 1.452 16.087 Atomic orbital electron populations 1.70004 1.07338 1.28208 1.31576 1.25960 0.94879 1.01042 0.93091 0.86125 0.80676 0.80536 0.78528 1.18294 1.19771 1.19769 1.21010 0.94494 0.88106 1.46614 0.90088 1.19205 0.86669 0.85418 0.80006 1.90604 1.15320 1.85486 1.52000 1.69134 1.37611 0.97474 1.23355 1.25679 0.90280 0.87454 0.93091 1.89059 1.05112 1.05717 1.79990 1.25224 0.94160 1.03053 1.05506 0.85256 1.30168 1.09182 1.16981 1.12341 1.09374 0.79143 0.78194 0.75745 1.93656 1.84429 1.82367 1.31497 1.93627 1.80649 1.56929 1.61218 1.30097 1.24162 1.01737 1.13322 1.19828 0.88472 0.87812 1.00855 0.92094 1.42485 1.02888 1.01470 1.78775 1.17364 0.81818 0.99815 0.93600 1.21322 0.94879 0.99016 0.97016 1.21014 0.93677 0.98981 0.99030 1.21155 0.99804 0.99586 0.93582 1.20967 0.93598 1.00432 0.98025 1.21241 0.94542 1.00989 0.97257 0.91442 0.82884 0.83243 0.83428 0.83527 0.85871 0.85758 0.86026 0.85776 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.17 11.82 55.55 0.66 -20.52 16 2 C 0.07 1.95 5.50 -17.36 -0.10 1.85 16 3 Si 0.92 19.48 29.56 -169.99 -5.02 14.45 16 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.47 -13.29 9.63 -35.62 -0.34 -13.63 16 8 H 0.08 2.20 7.85 -52.49 -0.41 1.79 16 9 C 0.48 13.83 7.67 -13.24 -0.10 13.73 16 10 O -0.55 -16.72 12.44 4.87 0.06 -16.66 16 11 N -0.53 -13.36 10.27 -11.64 -0.12 -13.48 16 12 C 0.41 8.66 7.88 -85.30 -0.67 7.98 16 13 S -0.03 -0.50 19.57 -107.50 -2.10 -2.60 16 14 C -0.15 -1.82 3.90 -25.23 -0.10 -1.92 16 15 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 16 C -0.56 -4.90 6.72 37.11 0.25 -4.65 16 17 S 2.40 21.23 5.94 -107.50 -0.64 20.59 16 18 O -0.92 -11.06 18.16 -57.72 -1.05 -12.11 16 19 O -0.93 -10.56 18.15 -57.72 -1.05 -11.61 16 20 C -0.56 -4.66 6.96 35.79 0.25 -4.41 16 21 C 0.14 1.72 2.52 -70.62 -0.18 1.54 16 22 H 0.06 0.74 7.07 -51.93 -0.37 0.37 16 23 N -0.54 -8.65 2.86 -108.56 -0.31 -8.96 16 24 C 0.17 2.49 5.14 -83.73 -0.43 2.06 16 25 C -0.10 -1.47 9.88 -39.38 -0.39 -1.86 16 26 C -0.11 -1.29 10.04 -39.61 -0.40 -1.68 16 27 C -0.12 -1.31 10.04 -39.54 -0.40 -1.71 16 28 C -0.11 -1.22 10.04 -39.61 -0.40 -1.62 16 29 C -0.12 -1.55 9.89 -39.38 -0.39 -1.94 16 30 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 31 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.15 1.28 7.97 -51.93 -0.41 0.86 16 33 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.15 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -38.75 359.91 -11.67 -50.43 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -4.13 Total: 1.30 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.39 Total: -6.26 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.23 Total: -42.95 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -2.04 Total: -40.38 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 20.73 SS G_CDS: -2.74 Total: 17.99 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.75 -11.67 -50.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.464 kcal (2) G-P(sol) polarization free energy of solvation -38.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds