Wall clock time and date at job start Tue Mar 31 2020 07:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30638 * 1 3 3 Si 1.86795 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47278 * 299.99864 * 3 2 1 6 6 H 1.48501 * 109.47269 * 60.00464 * 3 2 1 7 7 C 1.40096 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.46366 * 120.00202 * 359.97438 * 7 2 1 10 10 O 1.22059 * 120.00194 * 0.02562 * 9 7 2 11 11 N 1.34230 * 120.00320 * 180.02562 * 9 7 2 12 12 C 1.32535 * 120.00430 * 180.02562 * 11 9 7 13 13 S 1.79855 * 126.27209 * 0.64684 * 12 11 9 14 14 C 1.82376 * 92.64044 * 200.78518 * 13 12 11 15 15 H 1.09000 * 112.78446 * 83.17941 * 14 13 12 16 16 C 1.52898 * 114.70686 * 213.85567 * 14 13 12 17 17 S 1.83007 * 104.66871 * 137.64833 * 16 14 13 18 18 O 1.42095 * 109.78250 * 240.86894 * 17 16 14 19 19 O 1.42105 * 109.11092 * 107.62878 * 17 16 14 20 20 C 1.84567 * 96.86177 * 354.34459 * 17 16 14 21 21 C 1.50247 * 100.67385 * 336.79056 * 20 17 16 22 22 H 1.08994 * 103.27002 * 300.14990 * 21 20 17 23 23 N 1.38613 * 126.09986 * 179.97438 * 12 11 9 24 24 C 1.39760 * 123.08138 * 4.39826 * 23 12 11 25 25 C 1.38936 * 120.07281 * 66.64145 * 24 23 12 26 26 C 1.38091 * 119.92087 * 179.74610 * 25 24 23 27 27 C 1.38302 * 120.07813 * 0.53001 * 26 25 24 28 28 C 1.38300 * 120.14997 * 359.74862 * 27 26 25 29 29 C 1.38101 * 120.07528 * 359.97438 * 28 27 26 30 30 H 0.96998 * 120.00364 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.47236 * 257.08555 * 16 14 13 32 32 H 1.09002 * 110.47276 * 19.69450 * 16 14 13 33 33 H 1.09002 * 111.18042 * 218.93793 * 20 17 16 34 34 H 1.09000 * 111.21594 * 94.65820 * 20 17 16 35 35 H 1.08001 * 120.04136 * 0.02562 * 25 24 23 36 36 H 1.08001 * 119.96534 * 180.29955 * 26 25 24 37 37 H 1.07994 * 119.92846 * 179.71863 * 27 26 25 38 38 H 1.07997 * 119.96087 * 179.97438 * 28 27 26 39 39 H 1.07998 * 120.03454 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3964 1.2126 7 6 2.0068 -1.2133 -0.0005 8 1 3.0868 -1.2133 -0.0001 9 6 1.2750 -2.4809 -0.0005 10 8 0.0544 -2.4809 -0.0005 11 7 1.9460 -3.6434 -0.0005 12 6 1.2834 -4.7912 -0.0011 13 16 -0.5043 -4.9877 -0.0182 14 6 -0.4084 -6.6864 0.6386 15 1 -0.3153 -6.7146 1.7242 16 6 -1.4879 -7.6352 0.1169 17 16 -0.6038 -9.2009 -0.2235 18 8 -0.7158 -9.5266 -1.6021 19 8 -0.9606 -10.1605 0.7620 20 6 1.0973 -8.5730 0.1211 21 6 0.9004 -7.1001 -0.1007 22 1 0.5725 -7.0450 -1.1387 23 7 1.8450 -6.0584 -0.0016 24 6 3.2215 -6.2828 0.0881 25 6 3.9052 -5.9591 1.2535 26 6 5.2644 -6.1871 1.3406 27 6 5.9470 -6.7267 0.2656 28 6 5.2706 -7.0447 -0.8980 29 6 3.9103 -6.8247 -0.9899 30 1 -0.4850 0.8400 0.0004 31 1 -2.2628 -7.7817 0.8695 32 1 -1.9201 -7.2500 -0.8067 33 1 1.8193 -8.9843 -0.5843 34 1 1.3934 -8.7802 1.1494 35 1 3.3735 -5.5340 2.0919 36 1 5.7957 -5.9402 2.2479 37 1 7.0108 -6.8997 0.3348 38 1 5.8067 -7.4656 -1.7357 39 1 3.3828 -7.0729 -1.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006659947.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:44 Heat of formation + Delta-G solvation = -37.753672 kcal Electronic energy + Delta-G solvation = -28293.377543 eV Core-core repulsion = 24227.187767 eV Total energy + Delta-G solvation = -4066.189776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57527 -39.52118 -39.24742 -38.26330 -37.25923 -36.08233 -34.92771 -33.67149 -31.89659 -31.16873 -30.98759 -28.92446 -26.30805 -25.34383 -23.73806 -23.28157 -22.18735 -20.95709 -19.91118 -19.41607 -18.53795 -18.27543 -18.12172 -17.69819 -17.02933 -16.96891 -16.59287 -16.50900 -16.30460 -15.96577 -15.43540 -15.23149 -15.14142 -15.00412 -14.48666 -14.33836 -13.86856 -13.73109 -13.48787 -13.41733 -13.30582 -13.25706 -13.15855 -12.93036 -12.84558 -12.53966 -12.33943 -12.18358 -12.08389 -12.03737 -11.83302 -11.38252 -11.04342 -10.68736 -10.06586 -9.88547 -9.81828 -9.28767 -9.04052 -8.45273 -7.00874 -1.22922 0.00577 0.30000 0.34883 0.45965 0.77122 1.29616 1.35099 1.38229 1.53634 1.69260 2.18912 2.38454 2.46228 2.61335 2.83163 2.93027 3.14396 3.21582 3.56414 3.62662 3.79663 3.94924 4.01069 4.06092 4.25231 4.27490 4.37765 4.53796 4.59150 4.61050 4.65249 4.74904 5.08647 5.15294 5.28842 5.43897 5.58185 5.63787 5.75004 5.92622 6.15740 6.51711 6.66518 6.70274 8.22946 8.45372 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.003708 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.492496 B = 7548.635562 C = 9780.086124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.024 3.976 3 Si 1.004 2.996 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.260 1.260 7 C -0.513 4.513 8 H 0.080 0.920 9 C 0.470 3.530 10 O -0.585 6.585 11 N -0.581 5.581 12 C 0.428 3.572 13 S -0.099 6.099 14 C -0.122 4.122 15 H 0.150 0.850 16 C -0.557 4.557 17 S 2.437 3.563 18 O -0.949 6.949 19 O -0.943 6.943 20 C -0.549 4.549 21 C 0.125 3.875 22 H 0.064 0.936 23 N -0.524 5.524 24 C 0.133 3.867 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.106 4.106 29 C -0.128 4.128 30 H 0.283 0.717 31 H 0.183 0.817 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.103 0.897 36 H 0.144 0.856 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 -19.124 1.622 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.175 1.175 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.277 3.723 10 O -0.474 6.474 11 N -0.326 5.326 12 C 0.050 3.950 13 S 0.130 5.870 14 C -0.252 4.252 15 H 0.168 0.832 16 C -0.687 4.687 17 S 2.618 3.382 18 O -0.946 6.946 19 O -0.940 6.940 20 C -0.679 4.679 21 C 0.016 3.984 22 H 0.082 0.918 23 N -0.239 5.239 24 C 0.041 3.959 25 C -0.143 4.143 26 C -0.130 4.130 27 C -0.132 4.132 28 C -0.125 4.125 29 C -0.148 4.148 30 H 0.093 0.907 31 H 0.201 0.799 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.190 0.810 35 H 0.121 0.879 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.634 -18.871 0.967 19.718 hybrid contribution 0.514 1.362 0.602 1.575 sum 6.148 -17.509 1.569 18.624 Atomic orbital electron populations 1.70119 1.09439 1.29821 1.33016 1.27124 0.95744 1.04991 0.91455 0.84884 0.79099 0.74635 0.79227 1.17488 1.18552 1.18413 1.21369 0.94719 0.89441 1.49150 0.90181 1.19573 0.86545 0.87103 0.79051 1.90576 1.16457 1.87176 1.53221 1.69034 1.37623 0.97624 1.28340 1.26044 0.90923 0.88410 0.89624 1.89111 1.04861 1.12731 1.80256 1.25312 0.95635 0.97714 1.06571 0.83220 1.30285 1.09122 1.15796 1.13497 1.08124 0.78619 0.77093 0.74332 1.93627 1.84968 1.82811 1.33214 1.93610 1.81149 1.57613 1.61637 1.30147 1.24140 0.97772 1.15815 1.20205 0.87684 0.89276 1.01204 0.91792 1.42675 1.04299 1.00408 1.76501 1.17671 0.81217 1.02091 0.94942 1.21329 0.96207 1.00129 0.96651 1.21306 0.92647 0.98493 1.00514 1.21591 1.01425 0.97571 0.92609 1.21380 0.92734 0.99225 0.99115 1.21419 0.95630 1.00950 0.96755 0.90696 0.79914 0.82829 0.81098 0.80996 0.87852 0.83791 0.82584 0.82544 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.73 11.82 21.84 0.26 -47.47 16 2 C 0.02 1.36 5.50 85.32 0.47 1.83 16 3 Si 1.00 41.14 29.56 68.60 2.03 43.17 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.51 -30.92 9.63 24.84 0.24 -30.68 16 8 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.47 29.07 7.67 86.44 0.66 29.73 16 10 O -0.59 -38.39 12.44 -5.51 -0.07 -38.46 16 11 N -0.58 -30.97 10.27 -309.10 -3.17 -34.14 16 12 C 0.43 18.78 7.88 178.49 1.41 20.19 16 13 S -0.10 -3.95 19.57 -56.49 -1.11 -5.05 16 14 C -0.12 -2.83 3.90 31.56 0.12 -2.71 16 15 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 16 C -0.56 -8.57 6.72 71.95 0.48 -8.08 16 17 S 2.44 36.02 5.94 -56.49 -0.34 35.68 16 18 O -0.95 -20.49 18.16 -127.47 -2.31 -22.81 16 19 O -0.94 -18.38 18.15 -127.47 -2.31 -20.70 16 20 C -0.55 -7.23 6.96 71.09 0.49 -6.74 16 21 C 0.12 2.88 2.52 46.11 0.12 3.00 16 22 H 0.06 1.48 7.07 -2.39 -0.02 1.46 16 23 N -0.52 -16.82 2.86 -497.37 -1.42 -18.24 16 24 C 0.13 3.89 5.14 38.21 0.20 4.08 16 25 C -0.12 -3.52 9.88 22.40 0.22 -3.29 16 26 C -0.11 -2.43 10.04 22.25 0.22 -2.20 16 27 C -0.11 -2.01 10.04 22.30 0.22 -1.79 16 28 C -0.11 -1.95 10.04 22.25 0.22 -1.73 16 29 C -0.13 -3.04 9.89 22.40 0.22 -2.82 16 30 H 0.28 15.12 8.29 -92.71 -0.77 14.35 16 31 H 0.18 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.15 2.40 7.97 -2.39 -0.02 2.38 16 33 H 0.17 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.17 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.10 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -92.52 359.91 -2.04 -94.56 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.10 Total: 14.68 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 5.30 Total: -1.21 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -4.34 Total: -99.86 kcal Atomic # 8 Polarization: -77.27 SS G_CDS: -4.70 Total: -81.96 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Atomic # 16 Polarization: 32.07 SS G_CDS: -1.44 Total: 30.63 kcal Total: -92.52 -2.04 -94.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659947.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.809 kcal (2) G-P(sol) polarization free energy of solvation -92.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds