Wall clock time and date at job start Tue Mar 31 2020 07:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46848 * 119.99994 * 3 2 1 6 6 H 1.48501 * 109.47140 * 239.99905 * 3 2 1 7 7 C 1.40080 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00185 * 4.34761 * 7 2 1 9 9 C 1.46375 * 120.00179 * 184.34987 * 7 2 1 10 10 O 1.22057 * 120.00165 * 6.36780 * 9 7 2 11 11 N 1.34238 * 120.00141 * 186.36728 * 9 7 2 12 12 C 1.32531 * 120.00082 * 179.97438 * 11 9 7 13 13 S 1.76722 * 125.30225 * 0.02562 * 12 11 9 14 14 C 1.81905 * 95.98562 * 179.82645 * 13 12 11 15 15 H 1.08997 * 110.12884 * 243.34950 * 14 13 12 16 16 C 1.54004 * 109.55938 * 122.19335 * 14 13 12 17 17 S 1.83248 * 102.90581 * 218.24443 * 16 14 13 18 18 O 1.42104 * 109.42242 * 282.37829 * 17 16 14 19 19 O 1.42104 * 110.08588 * 148.16326 * 17 16 14 20 20 C 1.83750 * 94.42438 * 35.19343 * 17 16 14 21 21 C 1.52748 * 104.51225 * 1.63195 * 14 13 12 22 22 H 1.09001 * 107.87464 * 239.00241 * 21 14 13 23 23 N 1.35000 * 125.30158 * 179.72036 * 12 11 9 24 24 C 1.39758 * 120.86709 * 358.43242 * 23 12 11 25 25 C 1.38935 * 120.07698 * 246.69846 * 24 23 12 26 26 C 1.38087 * 119.92551 * 179.67277 * 25 24 23 27 27 C 1.38306 * 120.07557 * 0.61913 * 26 25 24 28 28 C 1.38305 * 120.14759 * 359.67804 * 27 26 25 29 29 C 1.38094 * 120.07706 * 359.97438 * 28 27 26 30 30 H 0.97007 * 119.99708 * 174.90050 * 1 2 3 31 31 H 1.08997 * 110.77758 * 335.81448 * 16 14 13 32 32 H 1.09005 * 110.77640 * 99.23970 * 16 14 13 33 33 H 1.08996 * 110.67384 * 207.27207 * 20 17 16 34 34 H 1.08998 * 110.81747 * 84.18567 * 20 17 16 35 35 H 1.08000 * 120.03430 * 359.97085 * 25 24 23 36 36 H 1.07993 * 119.96463 * 180.31475 * 26 25 24 37 37 H 1.07996 * 119.92514 * 179.69899 * 27 26 25 38 38 H 1.07996 * 119.95789 * 180.02562 * 28 27 26 39 39 H 1.08003 * 120.03433 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6179 0.0000 4 1 1.2752 2.7465 0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0940 1.6966 -1.2125 7 6 2.0068 -1.2131 -0.0005 8 1 1.4693 -2.1471 -0.0719 9 6 3.4674 -1.2148 0.0956 10 8 4.0673 -0.1704 0.2929 11 7 4.1472 -2.3652 -0.0332 12 6 5.4696 -2.3667 0.0534 13 16 6.4763 -0.9418 0.3348 14 6 8.0663 -1.8251 0.3112 15 1 8.5535 -1.7466 1.2830 16 6 8.9715 -1.2282 -0.7825 17 16 9.8098 -2.7051 -1.4710 18 8 10.8471 -3.1135 -0.5897 19 8 10.0794 -2.5133 -2.8530 20 6 8.3511 -3.8038 -1.2676 21 6 7.6926 -3.2784 0.0259 22 1 8.0550 -3.8861 0.8551 23 7 6.2572 -3.4579 -0.0540 24 6 5.7025 -4.7268 -0.2421 25 6 5.8152 -5.6904 0.7525 26 6 5.2601 -6.9410 0.5661 27 6 4.6037 -7.2390 -0.6142 28 6 4.4951 -6.2842 -1.6088 29 6 5.0416 -5.0292 -1.4261 30 1 -0.4850 -0.8368 -0.0747 31 1 8.3755 -0.7429 -1.5554 32 1 9.6899 -0.5307 -0.3517 33 1 8.6643 -4.8408 -1.1463 34 1 7.6708 -3.7051 -2.1135 35 1 6.3322 -5.4600 1.6723 36 1 5.3429 -7.6888 1.3408 37 1 4.1747 -8.2194 -0.7593 38 1 3.9815 -6.5201 -2.5291 39 1 4.9560 -4.2840 -2.2031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006659949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:57 Heat of formation + Delta-G solvation = -36.445704 kcal Electronic energy + Delta-G solvation = -28587.116361 eV Core-core repulsion = 24520.983302 eV Total energy + Delta-G solvation = -4066.133059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.53669 -38.26153 -38.02296 -37.37963 -36.36662 -34.84534 -33.25160 -32.37742 -30.98952 -30.29798 -29.78045 -26.93603 -25.87009 -24.16134 -22.67843 -22.21981 -20.74877 -19.74231 -19.27927 -18.35204 -17.46214 -17.10289 -16.93298 -16.38503 -16.14299 -16.01890 -15.87080 -15.20351 -15.05539 -14.73255 -14.29759 -14.12119 -13.70748 -13.50770 -13.46934 -13.39202 -13.07679 -12.73619 -12.56031 -12.50417 -12.41173 -12.35849 -12.12333 -11.85522 -11.60832 -11.35464 -11.10580 -10.97311 -10.67469 -10.40344 -10.08326 -9.53092 -9.17873 -9.06619 -8.99054 -8.96626 -8.13584 -7.88815 -7.78459 -7.25021 -5.11459 -0.37354 1.15725 1.35760 1.46613 1.77492 1.99443 2.17705 2.70975 3.13279 3.47631 3.52456 3.57670 3.61700 3.77115 3.97265 4.03661 4.10470 4.33340 4.39290 4.43375 4.54159 4.86297 4.88218 4.92228 5.05199 5.13199 5.21600 5.25432 5.37292 5.38531 5.39954 5.52564 5.77391 5.95128 6.25893 6.34441 6.45213 6.58950 6.82433 7.18159 7.53407 7.67604 8.09918 8.31528 8.54335 9.82074 10.04444 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.004399 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.445641 B = 6363.371180 C = 8661.228608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.052 3.948 3 Si 1.127 2.873 4 H -0.318 1.318 5 H -0.276 1.276 6 H -0.286 1.286 7 C -0.514 4.514 8 H 0.080 0.920 9 C 0.481 3.519 10 O -0.600 6.600 11 N -0.553 5.553 12 C 0.412 3.588 13 S 0.008 5.992 14 C -0.155 4.155 15 H 0.140 0.860 16 C -0.556 4.556 17 S 2.389 3.611 18 O -0.926 6.926 19 O -0.929 6.929 20 C -0.597 4.597 21 C 0.163 3.837 22 H 0.108 0.892 23 N -0.546 5.546 24 C 0.162 3.838 25 C -0.121 4.121 26 C -0.112 4.112 27 C -0.121 4.121 28 C -0.108 4.108 29 C -0.095 4.095 30 H 0.283 0.717 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.613 -11.618 -1.196 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.169 4.169 3 Si 0.958 3.042 4 H -0.250 1.250 5 H -0.203 1.203 6 H -0.214 1.214 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.294 3.706 10 O -0.499 6.499 11 N -0.297 5.297 12 C 0.034 3.966 13 S 0.237 5.763 14 C -0.284 4.284 15 H 0.158 0.842 16 C -0.687 4.687 17 S 2.570 3.430 18 O -0.923 6.923 19 O -0.926 6.926 20 C -0.727 4.727 21 C 0.057 3.943 22 H 0.126 0.874 23 N -0.262 5.262 24 C 0.069 3.931 25 C -0.141 4.141 26 C -0.130 4.130 27 C -0.140 4.140 28 C -0.127 4.127 29 C -0.115 4.115 30 H 0.094 0.906 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.683 -9.055 -1.336 19.028 hybrid contribution -0.441 -2.635 0.209 2.679 sum 16.242 -11.689 -1.126 20.043 Atomic orbital electron populations 1.70626 1.07664 1.32617 1.32289 1.27451 0.95369 1.05410 0.88626 0.82434 0.71695 0.70463 0.79613 1.24961 1.20250 1.21352 1.22129 0.89430 0.96408 1.46894 0.90160 1.19352 0.91023 0.81592 0.78584 1.90088 1.68064 1.33755 1.57946 1.69163 0.99569 1.33079 1.27899 1.24732 0.92905 0.87572 0.91412 1.88685 0.91814 1.07895 1.87937 1.24364 1.05268 0.95526 1.03236 0.84239 1.30537 1.11333 1.18323 1.08482 1.09304 0.77776 0.80055 0.75816 1.93641 1.51393 1.80461 1.66808 1.93642 1.83940 1.84218 1.30755 1.31054 1.19906 1.15686 1.06090 1.20938 0.80691 0.95500 0.97166 0.87384 1.43477 1.02923 1.03974 1.75783 1.17340 0.98219 0.83673 0.93875 1.21177 1.01404 0.93761 0.97789 1.20954 0.98254 0.96177 0.97649 1.21175 0.99346 0.99508 0.93927 1.21034 0.99174 0.92932 0.99527 1.21264 0.97363 0.96611 0.96289 0.90559 0.83151 0.83138 0.83530 0.83437 0.85955 0.85777 0.85976 0.85675 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.59 13.64 55.55 0.76 -21.83 16 2 C 0.05 1.46 5.52 -17.37 -0.10 1.36 16 3 Si 1.13 28.96 25.98 -169.99 -4.42 24.54 16 4 H -0.32 -7.85 7.11 56.52 0.40 -7.44 16 5 H -0.28 -7.26 6.79 56.52 0.38 -6.88 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.51 -14.77 10.06 -35.62 -0.36 -15.13 16 8 H 0.08 2.35 8.05 -52.48 -0.42 1.93 16 9 C 0.48 13.15 7.49 -13.23 -0.10 13.05 16 10 O -0.60 -16.55 9.37 4.87 0.05 -16.51 16 11 N -0.55 -13.17 9.85 -13.33 -0.13 -13.30 16 12 C 0.41 7.95 7.72 -88.69 -0.68 7.27 16 13 S 0.01 0.14 19.29 -107.50 -2.07 -1.93 16 14 C -0.15 -1.61 3.67 -26.34 -0.10 -1.71 16 15 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.56 -4.54 6.89 37.68 0.26 -4.28 16 17 S 2.39 20.41 6.06 -107.50 -0.65 19.76 16 18 O -0.93 -10.06 18.16 -57.67 -1.05 -11.10 16 19 O -0.93 -11.15 18.17 -57.67 -1.05 -12.20 16 20 C -0.60 -4.85 6.46 37.87 0.24 -4.60 16 21 C 0.16 1.69 3.10 -68.22 -0.21 1.48 16 22 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 23 N -0.55 -7.92 2.62 -107.66 -0.28 -8.21 16 24 C 0.16 2.27 4.47 -83.73 -0.37 1.89 16 25 C -0.12 -1.47 9.83 -39.38 -0.39 -1.86 16 26 C -0.11 -1.18 10.04 -39.61 -0.40 -1.58 16 27 C -0.12 -1.28 10.04 -39.53 -0.40 -1.67 16 28 C -0.11 -1.27 10.04 -39.61 -0.40 -1.67 16 29 C -0.10 -1.33 9.59 -39.38 -0.38 -1.71 16 30 H 0.28 7.63 8.72 -40.82 -0.36 7.27 16 31 H 0.15 1.27 7.80 -51.93 -0.41 0.87 16 32 H 0.15 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.15 1.24 8.08 -51.93 -0.42 0.82 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 354.52 15.07 5.34 5.34 Total: -1.00 -37.69 354.52 -11.10 -48.79 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -4.22 Total: -4.20 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.37 Total: -9.16 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.34 Total: -43.34 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.05 Total: -39.81 kcal Atomic # 14 Polarization: 28.96 SS G_CDS: -4.42 Total: 24.54 kcal Atomic # 16 Polarization: 20.56 SS G_CDS: -2.72 Total: 17.83 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.69 -11.10 -48.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.341 kcal (2) G-P(sol) polarization free energy of solvation -37.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds