Wall clock time and date at job start Tue Mar 31 2020 07:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48496 * 109.47124 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46848 * 119.99994 * 3 2 1 6 6 H 1.48501 * 109.47140 * 239.99905 * 3 2 1 7 7 C 1.40080 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00185 * 4.34761 * 7 2 1 9 9 C 1.46375 * 120.00179 * 184.34987 * 7 2 1 10 10 O 1.22057 * 120.00165 * 6.36780 * 9 7 2 11 11 N 1.34238 * 120.00141 * 186.36728 * 9 7 2 12 12 C 1.32531 * 120.00082 * 179.97438 * 11 9 7 13 13 S 1.76722 * 125.30225 * 0.02562 * 12 11 9 14 14 C 1.81905 * 95.98562 * 179.82645 * 13 12 11 15 15 H 1.08997 * 110.12884 * 243.34950 * 14 13 12 16 16 C 1.54004 * 109.55938 * 122.19335 * 14 13 12 17 17 S 1.83248 * 102.90581 * 218.24443 * 16 14 13 18 18 O 1.42104 * 109.42242 * 282.37829 * 17 16 14 19 19 O 1.42104 * 110.08588 * 148.16326 * 17 16 14 20 20 C 1.83750 * 94.42438 * 35.19343 * 17 16 14 21 21 C 1.52748 * 104.51225 * 1.63195 * 14 13 12 22 22 H 1.09001 * 107.87464 * 239.00241 * 21 14 13 23 23 N 1.35000 * 125.30158 * 179.72036 * 12 11 9 24 24 C 1.39758 * 120.86709 * 358.43242 * 23 12 11 25 25 C 1.38935 * 120.07698 * 246.69846 * 24 23 12 26 26 C 1.38087 * 119.92551 * 179.67277 * 25 24 23 27 27 C 1.38306 * 120.07557 * 0.61913 * 26 25 24 28 28 C 1.38305 * 120.14759 * 359.67804 * 27 26 25 29 29 C 1.38094 * 120.07706 * 359.97438 * 28 27 26 30 30 H 0.97007 * 119.99708 * 174.90050 * 1 2 3 31 31 H 1.08997 * 110.77758 * 335.81448 * 16 14 13 32 32 H 1.09005 * 110.77640 * 99.23970 * 16 14 13 33 33 H 1.08996 * 110.67384 * 207.27207 * 20 17 16 34 34 H 1.08998 * 110.81747 * 84.18567 * 20 17 16 35 35 H 1.08000 * 120.03430 * 359.97085 * 25 24 23 36 36 H 1.07993 * 119.96463 * 180.31475 * 26 25 24 37 37 H 1.07996 * 119.92514 * 179.69899 * 27 26 25 38 38 H 1.07996 * 119.95789 * 180.02562 * 28 27 26 39 39 H 1.08003 * 120.03433 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6179 0.0000 4 1 1.2752 2.7465 0.0006 5 1 3.0940 1.6965 1.2126 6 1 3.0940 1.6966 -1.2125 7 6 2.0068 -1.2131 -0.0005 8 1 1.4693 -2.1471 -0.0719 9 6 3.4674 -1.2148 0.0956 10 8 4.0673 -0.1704 0.2929 11 7 4.1472 -2.3652 -0.0332 12 6 5.4696 -2.3667 0.0534 13 16 6.4763 -0.9418 0.3348 14 6 8.0663 -1.8251 0.3112 15 1 8.5535 -1.7466 1.2830 16 6 8.9715 -1.2282 -0.7825 17 16 9.8098 -2.7051 -1.4710 18 8 10.8471 -3.1135 -0.5897 19 8 10.0794 -2.5133 -2.8530 20 6 8.3511 -3.8038 -1.2676 21 6 7.6926 -3.2784 0.0259 22 1 8.0550 -3.8861 0.8551 23 7 6.2572 -3.4579 -0.0540 24 6 5.7025 -4.7268 -0.2421 25 6 5.8152 -5.6904 0.7525 26 6 5.2601 -6.9410 0.5661 27 6 4.6037 -7.2390 -0.6142 28 6 4.4951 -6.2842 -1.6088 29 6 5.0416 -5.0292 -1.4261 30 1 -0.4850 -0.8368 -0.0747 31 1 8.3755 -0.7429 -1.5554 32 1 9.6899 -0.5307 -0.3517 33 1 8.6643 -4.8408 -1.1463 34 1 7.6708 -3.7051 -2.1135 35 1 6.3322 -5.4600 1.6723 36 1 5.3429 -7.6888 1.3408 37 1 4.1747 -8.2194 -0.7593 38 1 3.9815 -6.5201 -2.5291 39 1 4.9560 -4.2840 -2.2031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006659949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:56 Heat of formation + Delta-G solvation = -65.414282 kcal Electronic energy + Delta-G solvation = -28588.372532 eV Core-core repulsion = 24520.983302 eV Total energy + Delta-G solvation = -4067.389230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.64721 -39.97479 -39.11840 -38.24017 -37.20908 -36.08153 -35.24769 -33.89198 -31.90934 -31.12432 -30.87592 -28.84449 -26.77982 -25.53258 -23.60785 -23.23824 -22.27372 -20.91209 -20.20364 -20.00846 -18.81863 -18.31466 -17.80045 -17.48774 -17.18526 -17.10921 -16.90181 -16.52456 -16.35326 -15.87888 -15.62264 -15.43386 -15.13048 -15.09682 -14.52882 -14.38292 -14.31659 -14.18395 -13.75834 -13.42237 -13.35041 -13.26386 -13.12155 -12.88543 -12.67797 -12.62431 -12.39002 -12.26266 -12.04268 -11.79493 -11.55002 -11.44495 -11.24657 -10.70055 -10.15200 -9.91550 -9.82228 -9.39969 -9.34246 -9.23720 -7.24847 -1.13523 0.00242 0.10917 0.35153 0.43869 0.90391 1.23943 1.45933 1.50671 1.61236 1.93569 2.28578 2.35837 2.38668 2.66706 2.75740 2.83380 3.24336 3.30396 3.34958 3.66686 3.79360 3.90325 3.98034 4.02569 4.22954 4.28897 4.39681 4.50115 4.54314 4.60660 4.64300 4.71218 5.05696 5.25221 5.37348 5.37738 5.51513 5.55844 5.59132 5.71100 6.01261 6.22269 6.42758 6.50447 7.87190 7.92060 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.004399 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.445641 B = 6363.371180 C = 8661.228608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.026 3.974 3 Si 1.163 2.837 4 H -0.302 1.302 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.495 3.505 10 O -0.614 6.614 11 N -0.607 5.607 12 C 0.429 3.571 13 S -0.047 6.047 14 C -0.129 4.129 15 H 0.178 0.822 16 C -0.557 4.557 17 S 2.427 3.573 18 O -0.940 6.940 19 O -0.962 6.962 20 C -0.590 4.590 21 C 0.143 3.857 22 H 0.150 0.850 23 N -0.528 5.528 24 C 0.132 3.868 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.116 4.116 28 C -0.117 4.117 29 C -0.117 4.117 30 H 0.280 0.720 31 H 0.148 0.852 32 H 0.184 0.816 33 H 0.177 0.823 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.139 0.861 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.227 -13.695 -0.311 24.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.190 4.190 3 Si 0.992 3.008 4 H -0.232 1.232 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.592 4.592 8 H 0.075 0.925 9 C 0.304 3.696 10 O -0.511 6.511 11 N -0.356 5.356 12 C 0.051 3.949 13 S 0.184 5.816 14 C -0.259 4.259 15 H 0.196 0.804 16 C -0.688 4.688 17 S 2.610 3.390 18 O -0.937 6.937 19 O -0.959 6.959 20 C -0.720 4.720 21 C 0.039 3.961 22 H 0.167 0.833 23 N -0.241 5.241 24 C 0.040 3.960 25 C -0.144 4.144 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.135 4.135 29 C -0.137 4.137 30 H 0.091 0.909 31 H 0.166 0.834 32 H 0.201 0.799 33 H 0.194 0.806 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.174 0.826 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.366 -11.162 -0.462 23.229 hybrid contribution -1.125 -2.266 -0.069 2.531 sum 19.241 -13.428 -0.531 23.469 Atomic orbital electron populations 1.70633 1.07771 1.32418 1.34559 1.28128 0.95716 1.06943 0.88203 0.81970 0.70939 0.69244 0.78639 1.23207 1.21529 1.21861 1.22109 0.90907 0.95689 1.50537 0.92550 1.19260 0.90817 0.82608 0.76904 1.90089 1.68996 1.34592 1.57460 1.69036 1.01885 1.31471 1.33221 1.25052 0.92526 0.89407 0.87877 1.88703 0.96369 1.09381 1.87155 1.24611 1.00774 0.94174 1.06336 0.80407 1.30623 1.11349 1.18946 1.07853 1.08176 0.77106 0.79355 0.74390 1.93624 1.52392 1.80729 1.66956 1.93607 1.84639 1.84752 1.32886 1.31053 1.18949 1.17354 1.04633 1.21531 0.78355 0.96207 1.00028 0.83303 1.43851 1.04080 1.03257 1.72878 1.17587 0.99939 0.83660 0.94863 1.21411 1.01510 0.93811 0.97670 1.21378 0.96853 0.96186 0.98268 1.21576 0.98256 1.00326 0.93260 1.21288 0.98969 0.92488 1.00788 1.21263 0.98730 0.97326 0.96397 0.90899 0.83409 0.79867 0.80564 0.83873 0.84199 0.82587 0.83000 0.84351 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.42 13.64 21.84 0.30 -48.13 16 2 C 0.03 1.54 5.52 85.32 0.47 2.01 16 3 Si 1.16 60.79 25.98 68.60 1.78 62.57 16 4 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.29 -15.42 6.79 99.48 0.68 -14.74 16 6 H -0.29 -15.21 7.11 99.48 0.71 -14.50 16 7 C -0.56 -33.99 10.06 24.84 0.25 -33.74 16 8 H 0.06 3.57 8.05 -2.91 -0.02 3.54 16 9 C 0.49 28.23 7.49 86.44 0.65 28.88 16 10 O -0.61 -34.87 9.37 -5.50 -0.05 -34.92 16 11 N -0.61 -30.02 9.85 -314.46 -3.10 -33.11 16 12 C 0.43 16.51 7.72 179.67 1.39 17.90 16 13 S -0.05 -1.56 19.29 -56.49 -1.09 -2.65 16 14 C -0.13 -2.21 3.67 30.85 0.11 -2.09 16 15 H 0.18 1.83 8.14 -2.39 -0.02 1.81 16 16 C -0.56 -7.08 6.89 72.32 0.50 -6.58 16 17 S 2.43 33.03 6.06 -56.49 -0.34 32.69 16 18 O -0.94 -16.45 18.16 -127.53 -2.32 -18.77 16 19 O -0.96 -20.91 18.17 -127.53 -2.32 -23.23 16 20 C -0.59 -7.49 6.46 72.45 0.47 -7.03 16 21 C 0.14 2.43 3.10 45.68 0.14 2.57 16 22 H 0.15 1.51 8.11 -2.39 -0.02 1.50 16 23 N -0.53 -14.39 2.62 -494.51 -1.30 -15.69 16 24 C 0.13 3.49 4.47 38.21 0.17 3.66 16 25 C -0.12 -2.62 9.83 22.40 0.22 -2.40 16 26 C -0.11 -1.89 10.04 22.25 0.22 -1.67 16 27 C -0.12 -2.09 10.04 22.30 0.22 -1.86 16 28 C -0.12 -2.61 10.04 22.25 0.22 -2.39 16 29 C -0.12 -3.25 9.59 22.40 0.21 -3.03 16 30 H 0.28 15.98 8.72 -92.70 -0.81 15.17 16 31 H 0.15 2.15 7.80 -2.39 -0.02 2.13 16 32 H 0.18 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.18 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.14 2.11 8.08 -2.39 -0.02 2.09 16 35 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.10 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -87.85 354.52 -2.15 -90.00 By element: Atomic # 1 Polarization: -4.02 SS G_CDS: 1.02 Total: -2.99 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.25 Total: -5.78 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -4.09 Total: -96.93 kcal Atomic # 8 Polarization: -72.23 SS G_CDS: -4.68 Total: -76.92 kcal Atomic # 14 Polarization: 60.79 SS G_CDS: 1.78 Total: 62.57 kcal Atomic # 16 Polarization: 31.47 SS G_CDS: -1.43 Total: 30.04 kcal Total: -87.85 -2.15 -90.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006659949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.587 kcal (2) G-P(sol) polarization free energy of solvation -87.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds