Wall clock time and date at job start Tue Mar 31 2020 05:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30865 * 1 3 3 Si 1.86794 * 120.00243 * 2 1 4 4 H 1.48505 * 109.47491 * 270.00170 * 3 2 1 5 5 H 1.48502 * 109.47287 * 30.00038 * 3 2 1 6 6 H 1.48501 * 109.47443 * 150.00069 * 3 2 1 7 7 C 1.39910 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 175.55399 * 7 2 1 9 9 C 1.41162 * 119.99757 * 355.55967 * 7 2 1 10 10 C 1.40862 * 120.16195 * 214.78357 * 9 7 2 11 11 C 1.36370 * 119.82923 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16732 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83392 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00110 * 35.28278 * 13 12 11 15 15 O 1.21279 * 120.00292 * 355.71513 * 14 13 12 16 16 C 1.50703 * 120.00095 * 175.71092 * 14 13 12 17 17 O 1.42901 * 109.47149 * 180.02562 * 16 14 13 18 18 C 1.35951 * 116.99765 * 179.97438 * 17 16 14 19 19 C 1.38794 * 120.05867 * 90.00297 * 18 17 16 20 20 Cl 1.73603 * 120.03119 * 359.70065 * 19 18 17 21 21 C 1.38259 * 119.93464 * 179.97438 * 19 18 17 22 22 C 1.38262 * 120.06257 * 0.02562 * 21 19 18 23 23 C 1.38257 * 120.12856 * 359.95443 * 22 21 19 24 24 C 1.38266 * 120.06087 * 0.04395 * 23 22 21 25 25 Cl 1.73602 * 120.02915 * 180.02562 * 24 23 22 26 26 C 1.39476 * 120.33355 * 0.25273 * 12 11 10 27 27 C 1.36382 * 120.16792 * 359.48866 * 26 12 11 28 28 H 0.97003 * 120.00184 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.08839 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.91918 * 179.97438 * 11 10 9 31 31 H 0.96994 * 120.00194 * 215.28728 * 13 12 11 32 32 H 1.08997 * 109.46877 * 60.00086 * 16 14 13 33 33 H 1.09003 * 109.46811 * 300.00299 * 16 14 13 34 34 H 1.07995 * 119.97025 * 179.97438 * 21 19 18 35 35 H 1.07997 * 119.93389 * 179.97438 * 22 21 19 36 36 H 1.08000 * 119.96689 * 180.02562 * 23 22 21 37 37 H 1.07995 * 119.91720 * 179.74639 * 26 12 11 38 38 H 1.08000 * 120.08617 * 180.25303 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3056 -2.4323 0.0936 10 6 1.8648 -3.5187 0.7945 11 6 1.1803 -4.6950 0.8807 12 6 -0.0707 -4.8238 0.2775 13 7 -0.7633 -6.0283 0.3694 14 6 -0.6807 -6.7692 1.4922 15 8 0.0571 -6.4268 2.3918 16 6 -1.5052 -8.0231 1.6300 17 8 -1.2453 -8.6271 2.8987 18 6 -1.9143 -9.7757 3.1841 19 6 -1.3647 -11.0035 2.8425 20 17 0.1747 -11.0742 2.0431 21 6 -2.0470 -12.1701 3.1344 22 6 -3.2760 -12.1142 3.7654 23 6 -3.8257 -10.8925 4.1072 24 6 -3.1478 -9.7227 3.8178 25 17 -3.8385 -8.1892 4.2480 26 6 -0.6288 -3.7542 -0.4223 27 6 0.0415 -2.5699 -0.5126 28 1 -0.4850 0.8401 0.0004 29 1 2.8336 -3.4205 1.2618 30 1 1.6079 -5.5289 1.4174 31 1 -1.3052 -6.3341 -0.3746 32 1 -1.2419 -8.7202 0.8345 33 1 -2.5634 -7.7719 1.5574 34 1 -1.6201 -13.1257 2.8684 35 1 -3.8074 -13.0267 3.9921 36 1 -4.7856 -10.8520 4.6005 37 1 -1.5960 -3.8627 -0.8902 38 1 -0.3938 -1.7412 -1.0513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007835047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:57 Heat of formation + Delta-G solvation = -28.549737 kcal Electronic energy + Delta-G solvation = -26160.541736 eV Core-core repulsion = 22020.256476 eV Total energy + Delta-G solvation = -4140.285260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.57822 -39.58998 -37.85899 -37.06498 -36.97501 -36.57474 -34.43533 -32.95788 -31.14722 -30.86212 -29.63423 -29.25584 -27.76054 -24.75599 -23.40954 -22.97748 -21.68975 -20.86047 -19.76363 -18.65418 -17.43623 -17.22046 -17.14674 -17.06879 -16.04165 -15.46958 -15.31902 -15.12221 -14.85773 -14.80782 -13.98212 -13.82961 -13.61686 -13.13104 -12.88101 -12.74849 -12.67626 -12.53811 -12.26692 -12.10370 -11.70536 -11.47423 -11.38782 -11.36812 -11.30915 -11.15141 -10.99006 -10.72081 -10.31439 -10.01782 -9.49513 -9.44102 -9.21538 -9.17119 -9.11640 -8.88290 -7.54634 -6.87513 -6.61609 -4.34091 0.40107 0.46036 1.48807 1.91528 2.50329 2.62638 2.99115 3.05285 3.08961 3.10654 3.14779 3.33809 3.88561 3.98795 4.25863 4.45839 4.60875 4.69452 4.71953 4.84028 4.86170 4.99046 5.03445 5.43961 5.48959 5.65542 5.65997 5.90388 6.18692 6.44854 6.72377 6.84962 6.98226 7.06879 7.19516 7.29898 7.64000 7.72585 7.86685 8.06444 8.22674 8.31738 8.61466 8.70753 8.93071 8.99590 10.29414 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002003 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.209723 B =13975.464381 C =14857.104129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.004 3.996 13 N -0.648 5.648 14 C 0.502 3.498 15 O -0.503 6.503 16 C 0.050 3.950 17 O -0.290 6.290 18 C 0.115 3.885 19 C -0.046 4.046 20 Cl -0.039 7.039 21 C -0.096 4.096 22 C -0.101 4.101 23 C -0.096 4.096 24 C -0.047 4.047 25 Cl -0.037 7.037 26 C -0.119 4.119 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.396 0.604 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 -23.649 3.161 26.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.088 4.088 13 N -0.293 5.293 14 C 0.287 3.713 15 O -0.377 6.377 16 C -0.027 4.027 17 O -0.205 6.205 18 C 0.068 3.932 19 C -0.074 4.074 20 Cl -0.010 7.010 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.074 4.074 25 Cl -0.008 7.008 26 C -0.139 4.139 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.229 0.771 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.110 0.890 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.130 -22.995 3.920 25.432 hybrid contribution -0.138 0.645 -0.386 0.764 sum -10.268 -22.350 3.534 24.849 Atomic orbital electron populations 1.69756 1.07288 1.28714 1.38098 1.25886 0.94955 1.01193 0.92571 0.86191 0.80261 0.80466 0.79023 1.19533 1.20306 1.18711 1.19503 0.94748 0.90196 1.44600 0.90585 1.17739 0.92295 0.92017 0.88188 1.20811 1.01270 0.94906 1.05495 1.20413 0.92737 0.97921 0.99362 1.17216 0.94150 0.85521 1.11910 1.42786 1.49282 1.21454 1.15774 1.19847 0.83880 0.84608 0.82970 1.90740 1.37674 1.69838 1.39455 1.22512 1.00256 0.94602 0.85359 1.86214 1.63938 1.35374 1.34958 1.18190 0.90284 0.85973 0.98710 1.21342 0.90727 0.93880 1.01441 1.98420 1.26455 1.98587 1.77530 1.21142 0.94797 0.97210 0.98369 1.21133 0.94994 0.97902 0.97946 1.21152 1.00547 0.90242 0.99546 1.21361 0.93744 0.89209 1.03104 1.98429 1.83345 1.27779 1.91240 1.20304 0.98342 0.93054 1.02217 1.21195 0.97305 0.95524 1.02165 0.91138 0.88527 0.87418 0.77055 0.89927 0.89794 0.83770 0.83724 0.83755 0.89028 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.20 10.59 55.55 0.59 -20.61 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.15 29.56 -169.99 -5.03 14.12 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.34 9.03 -37.85 -0.34 -12.68 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.20 -5.26 9.74 -39.26 -0.38 -5.64 16 11 C -0.08 -2.05 8.61 -39.79 -0.34 -2.39 16 12 C 0.00 0.09 6.31 -83.57 -0.53 -0.44 16 13 N -0.65 -11.28 5.30 -9.74 -0.05 -11.33 16 14 C 0.50 8.98 7.74 -10.98 -0.08 8.90 16 15 O -0.50 -11.41 13.92 -14.35 -0.20 -11.61 16 16 C 0.05 0.66 6.54 36.01 0.24 0.90 16 17 O -0.29 -4.27 8.51 -39.50 -0.34 -4.61 16 18 C 0.11 1.35 5.71 -39.18 -0.22 1.13 16 19 C -0.05 -0.46 6.33 -39.37 -0.25 -0.71 16 20 Cl -0.04 -0.42 28.50 -51.86 -1.48 -1.90 16 21 C -0.10 -0.66 9.83 -39.56 -0.39 -1.05 16 22 C -0.10 -0.56 10.04 -39.57 -0.40 -0.95 16 23 C -0.10 -0.67 9.83 -39.56 -0.39 -1.06 16 24 C -0.05 -0.47 6.33 -39.37 -0.25 -0.72 16 25 Cl -0.04 -0.42 28.50 -51.86 -1.48 -1.90 16 26 C -0.12 -2.70 9.90 -39.79 -0.39 -3.09 16 27 C -0.14 -3.65 8.62 -39.26 -0.34 -3.99 16 28 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 29 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.11 2.61 6.22 -52.49 -0.33 2.28 16 31 H 0.40 5.18 8.82 -40.82 -0.36 4.82 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.15 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.13 3.50 6.13 -52.49 -0.32 3.18 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.31 365.61 -10.74 -43.05 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.51 Total: 7.32 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -4.76 Total: -18.04 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.54 Total: -31.95 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.54 Total: -16.22 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -2.96 Total: -3.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.31 -10.74 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007835047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.502 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds