Wall clock time and date at job start Tue Mar 31 2020 07:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47226 * 300.00240 * 3 2 1 6 6 H 1.48498 * 109.47081 * 59.99975 * 3 2 1 7 7 C 1.38719 * 120.00441 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00294 * 180.02562 * 7 2 1 9 9 O 1.34771 * 119.99439 * 359.97438 * 7 2 1 10 10 C 1.35560 * 116.99584 * 175.41228 * 9 7 2 11 11 C 1.39206 * 119.89104 * 5.11555 * 10 9 7 12 12 C 1.37095 * 120.11012 * 179.97438 * 11 10 9 13 13 C 1.40118 * 119.88684 * 0.02562 * 12 11 10 14 14 C 1.46753 * 120.10641 * 180.02562 * 13 12 11 15 15 C 1.35791 * 119.99903 * 158.79710 * 14 13 12 16 16 S 1.77580 * 128.21687 * 352.64058 * 15 14 13 17 17 C 1.77269 * 94.33089 * 179.97438 * 16 15 14 18 18 N 1.37086 * 126.48944 * 179.97438 * 17 16 15 19 19 C 1.39806 * 119.99546 * 174.64380 * 18 17 16 20 20 C 1.38909 * 120.07305 * 327.31819 * 19 18 17 21 21 C 1.38104 * 119.91845 * 179.72216 * 20 19 18 22 22 C 1.38281 * 120.07996 * 0.55694 * 21 20 19 23 23 C 1.38289 * 120.14566 * 359.71993 * 22 21 20 24 24 C 1.38106 * 120.07525 * 359.97438 * 23 22 21 25 25 N 1.31261 * 107.01381 * 0.02562 * 17 16 15 26 26 C 1.31486 * 120.41447 * 359.97438 * 25 17 16 27 27 O 1.22070 * 122.66496 * 180.02562 * 26 25 17 28 28 C 1.40125 * 119.78367 * 0.28146 * 13 12 11 29 29 C 1.37092 * 119.88761 * 359.41958 * 28 13 12 30 30 H 0.97003 * 120.00219 * 359.97438 * 1 2 3 31 31 H 1.07997 * 119.94350 * 359.96901 * 11 10 9 32 32 H 1.07997 * 120.05473 * 180.02562 * 12 11 10 33 33 H 1.08000 * 119.99944 * 338.79156 * 14 13 12 34 34 H 0.96992 * 120.00676 * 354.64135 * 18 17 16 35 35 H 1.07998 * 120.03792 * 359.97438 * 20 19 18 36 36 H 1.08007 * 119.95511 * 180.27614 * 21 20 19 37 37 H 1.07994 * 119.93025 * 179.69865 * 22 21 20 38 38 H 1.08005 * 119.96474 * 179.97438 * 23 22 21 39 39 H 1.08001 * 120.03387 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.05432 * 179.70437 * 28 13 12 41 41 H 1.07993 * 119.94839 * 180.31879 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3348 -2.3684 -0.0005 10 6 2.0698 -3.5033 -0.0977 11 6 3.4600 -3.4328 -0.0840 12 6 4.2077 -4.5778 -0.1815 13 6 3.5703 -5.8204 -0.2955 14 6 4.3659 -7.0491 -0.3995 15 6 3.8102 -8.2467 -0.0821 16 16 2.2207 -8.5622 0.6442 17 6 2.4256 -10.3230 0.6549 18 7 1.5211 -11.2462 1.1119 19 6 1.7757 -12.6118 0.9537 20 6 2.4785 -13.0649 -0.1555 21 6 2.7331 -14.4139 -0.3057 22 6 2.2794 -15.3144 0.6406 23 6 1.5745 -14.8672 1.7430 24 6 1.3218 -13.5189 1.9027 25 7 3.6080 -10.5752 0.1436 26 6 4.3828 -9.5920 -0.2586 27 8 5.4887 -9.7794 -0.7403 28 6 2.1707 -5.8854 -0.3153 29 6 1.4318 -4.7354 -0.2111 30 1 -0.4850 0.8400 0.0004 31 1 3.9504 -2.4746 0.0034 32 1 5.2862 -4.5221 -0.1704 33 1 5.3934 -7.0008 -0.7287 34 1 0.7046 -10.9521 1.5449 35 1 2.8288 -12.3626 -0.8975 36 1 3.2834 -14.7664 -1.1657 37 1 2.4757 -16.3693 0.5182 38 1 1.2212 -15.5732 2.4801 39 1 0.7708 -13.1704 2.7637 40 1 1.6748 -6.8405 -0.4078 41 1 0.3531 -4.7849 -0.2210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007919091.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:59 Heat of formation + Delta-G solvation = 58.171073 kcal Electronic energy + Delta-G solvation = -27393.917440 eV Core-core repulsion = 23332.276416 eV Total energy + Delta-G solvation = -4061.641024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -40.37893 -39.51901 -39.28265 -37.29191 -36.95293 -34.73520 -33.25062 -32.41581 -31.22845 -30.69242 -29.95651 -28.30171 -25.92567 -24.95927 -23.60301 -23.00675 -22.39907 -22.12637 -20.88377 -19.40175 -18.79820 -18.42963 -17.49748 -17.19990 -16.98245 -16.32766 -15.69583 -15.32324 -15.09781 -14.96496 -14.84081 -14.64822 -14.31164 -14.05740 -13.89440 -13.71634 -13.65536 -13.38756 -12.93737 -12.70146 -12.51033 -12.10445 -12.02290 -11.93603 -11.84051 -11.43203 -11.34554 -11.28165 -10.97529 -10.65716 -10.55273 -10.02147 -9.98263 -9.68179 -9.29666 -9.16972 -9.10594 -8.58548 -8.39274 -8.23003 -7.19607 -6.83493 -4.35240 0.05128 0.63482 0.97913 1.11893 1.43246 1.83437 2.03076 2.47833 2.54150 2.94350 2.95458 3.01332 3.48869 3.66610 3.68528 4.16893 4.29189 4.50095 4.56018 4.65157 4.75911 4.86949 4.89613 5.10009 5.14150 5.19696 5.32246 5.41951 5.42571 5.68573 5.74756 5.84106 5.91645 5.94233 6.05549 6.19733 6.23550 6.32365 6.34559 6.58571 6.58773 6.72783 6.77691 6.92608 7.01748 7.08485 7.44283 7.61798 7.69832 8.01215 8.60469 9.25114 10.32067 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.025038 B = 0.001724 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.027423 B =16237.454310 C =17140.640683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.391 4.391 8 H 0.102 0.898 9 O -0.151 6.151 10 C 0.171 3.829 11 C -0.241 4.241 12 C -0.020 4.020 13 C -0.220 4.220 14 C 0.116 3.884 15 C -0.320 4.320 16 S 0.011 5.989 17 C 0.439 3.561 18 N -0.599 5.599 19 C 0.143 3.857 20 C -0.107 4.107 21 C -0.099 4.099 22 C -0.132 4.132 23 C -0.103 4.103 24 C -0.140 4.140 25 N -0.640 5.640 26 C 0.553 3.447 27 O -0.481 6.481 28 C -0.038 4.038 29 C -0.192 4.192 30 H 0.277 0.723 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.431 0.569 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 -20.810 2.981 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.165 4.165 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.119 0.881 9 O -0.051 6.051 10 C 0.112 3.888 11 C -0.261 4.261 12 C -0.039 4.039 13 C -0.222 4.222 14 C 0.091 3.909 15 C -0.438 4.438 16 S 0.251 5.749 17 C 0.064 3.936 18 N -0.227 5.227 19 C 0.047 3.953 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.161 4.161 25 N -0.388 5.388 26 C 0.336 3.664 27 O -0.359 6.359 28 C -0.058 4.058 29 C -0.212 4.212 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.164 0.836 34 H 0.271 0.729 35 H 0.158 0.842 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.006 -20.613 2.938 20.821 hybrid contribution 0.807 0.901 -0.067 1.211 sum 0.813 -19.712 2.872 19.937 Atomic orbital electron populations 1.70014 1.06260 1.28627 1.42461 1.25474 0.95961 0.99388 0.95689 0.85534 0.79279 0.79412 0.78652 1.18691 1.19721 1.19733 1.21637 0.92347 0.80385 1.52210 0.88113 1.83888 1.35254 1.11960 1.73949 1.19642 0.90348 0.87704 0.91081 1.20998 0.93578 0.99258 1.12227 1.20851 0.98793 0.90944 0.93324 1.18443 0.92960 0.92064 1.18713 1.21927 0.97539 0.88593 0.82794 1.25297 0.98693 0.99734 1.20114 1.85870 1.20265 0.97123 1.71660 1.24917 0.88593 0.94007 0.86035 1.41406 1.20581 1.02401 1.58345 1.17791 1.00797 0.81423 0.95337 1.21261 0.98486 0.96403 0.96654 1.21071 0.98904 0.92485 0.99334 1.21191 0.99077 0.99845 0.94968 1.20925 0.98591 0.94668 0.97984 1.20857 1.03893 0.93275 0.98122 1.66729 1.05887 1.36695 1.29460 1.18716 0.86618 0.82820 0.78203 1.90809 1.18398 1.86304 1.40399 1.20903 0.92549 0.96946 0.95435 1.19980 0.99970 0.89830 1.11389 0.91298 0.84790 0.86382 0.83632 0.72905 0.84220 0.85531 0.85879 0.85533 0.85492 0.85746 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.41 13.67 55.48 0.76 -21.65 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.95 18.46 29.55 -169.99 -5.02 13.44 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 7 C -0.39 -9.79 9.48 30.91 0.29 -9.49 16 8 H 0.10 2.30 5.18 -52.49 -0.27 2.03 16 9 O -0.15 -3.87 9.74 0.80 0.01 -3.86 16 10 C 0.17 3.68 6.66 -38.86 -0.26 3.42 16 11 C -0.24 -4.63 9.12 -39.64 -0.36 -4.99 16 12 C -0.02 -0.34 9.77 -39.29 -0.38 -0.72 16 13 C -0.22 -3.59 5.80 -105.04 -0.61 -4.20 16 14 C 0.12 1.74 9.84 -37.02 -0.36 1.38 16 15 C -0.32 -4.99 6.37 -36.79 -0.23 -5.23 16 16 S 0.01 0.14 19.10 -107.50 -2.05 -1.91 16 17 C 0.44 5.49 8.14 -87.84 -0.72 4.77 16 18 N -0.60 -5.45 5.43 -10.16 -0.06 -5.50 16 19 C 0.14 1.39 6.37 -83.73 -0.53 0.85 16 20 C -0.11 -1.19 8.78 -39.38 -0.35 -1.53 16 21 C -0.10 -0.91 10.04 -39.61 -0.40 -1.31 16 22 C -0.13 -1.00 10.04 -39.55 -0.40 -1.40 16 23 C -0.10 -0.73 10.04 -39.61 -0.40 -1.12 16 24 C -0.14 -1.07 9.96 -39.38 -0.39 -1.46 16 25 N -0.64 -10.12 7.88 -13.30 -0.10 -10.23 16 26 C 0.55 9.73 8.03 -14.03 -0.11 9.62 16 27 O -0.48 -9.77 17.97 4.85 0.09 -9.68 16 28 C -0.04 -0.63 8.59 -39.29 -0.34 -0.97 16 29 C -0.19 -3.65 9.95 -39.64 -0.39 -4.05 16 30 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.13 2.53 5.61 -52.49 -0.29 2.23 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.43 2.43 8.93 -40.82 -0.36 2.07 16 35 H 0.14 1.81 6.39 -52.49 -0.34 1.48 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 40 H 0.13 1.88 4.67 -29.57 -0.14 1.74 16 41 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -31.52 372.66 -10.31 -41.83 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -3.50 Total: 7.44 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -6.04 Total: -15.47 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.60 Total: -37.39 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.10 Total: -13.54 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.05 Total: -1.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.52 -10.31 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007919091.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.997 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds