Wall clock time and date at job start Tue Mar 31 2020 07:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00040 * 2 1 4 4 H 1.48502 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47221 * 300.00351 * 3 2 1 6 6 H 1.48503 * 109.46837 * 60.00398 * 3 2 1 7 7 C 1.37877 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00340 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47297 * 180.02562 * 9 7 2 11 11 C 1.36804 * 124.95101 * 265.02382 * 10 9 7 12 12 C 1.35415 * 109.73142 * 179.97438 * 11 10 9 13 13 C 1.48370 * 126.63694 * 179.97438 * 12 11 10 14 14 C 1.34678 * 122.27499 * 0.02945 * 13 12 11 15 15 S 1.76218 * 108.23856 * 179.97438 * 14 13 12 16 16 C 1.76116 * 90.00935 * 359.97438 * 15 14 13 17 17 C 1.47781 * 125.32814 * 179.97438 * 16 15 14 18 18 C 1.39555 * 122.81940 * 0.03052 * 17 16 15 19 19 C 1.32961 * 114.91842 * 179.97438 * 18 17 16 20 20 S 1.75790 * 110.01066 * 0.02562 * 19 18 17 21 21 C 1.34855 * 122.81752 * 179.73617 * 17 16 15 22 22 N 1.30135 * 109.33798 * 359.76325 * 16 15 14 23 23 C 1.47132 * 106.72957 * 359.80073 * 12 11 10 24 24 C 1.39446 * 133.94799 * 179.56609 * 23 12 11 25 25 C 1.36683 * 119.78854 * 180.32491 * 24 23 12 26 26 C 1.38815 * 120.48546 * 0.27925 * 25 24 23 27 27 C 1.37739 * 120.64511 * 359.97438 * 26 25 24 28 28 C 1.37751 * 124.95384 * 84.99730 * 10 9 7 29 29 H 0.97000 * 120.00368 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46666 * 60.00152 * 9 7 2 31 31 H 1.09003 * 109.46639 * 300.00312 * 9 7 2 32 32 H 1.08001 * 125.13326 * 359.97438 * 11 10 9 33 33 H 1.07999 * 125.88729 * 359.97438 * 14 13 12 34 34 H 1.07994 * 122.54224 * 359.97438 * 18 17 16 35 35 H 1.08002 * 124.99230 * 179.97438 * 19 18 17 36 36 H 1.07997 * 125.23892 * 0.04021 * 21 17 16 37 37 H 1.08002 * 120.10908 * 0.61006 * 24 23 12 38 38 H 1.07998 * 119.75561 * 180.25187 * 25 24 23 39 39 H 1.08001 * 119.67469 * 179.97438 * 26 25 24 40 40 H 1.08002 * 120.10578 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6382 -4.2716 -1.1176 12 6 3.5112 -5.2444 -0.7635 13 6 4.2087 -6.1832 -1.6764 14 6 4.0307 -6.1543 -3.0111 15 16 5.0287 -7.4172 -3.7281 16 6 5.6034 -7.8726 -2.1269 17 6 6.5647 -8.9580 -1.8407 18 6 7.1288 -9.7518 -2.8402 19 6 7.9746 -10.6816 -2.4066 20 16 8.1087 -10.6032 -0.6556 21 6 6.9748 -9.2606 -0.5921 22 7 5.0524 -7.1008 -1.2357 23 6 3.6373 -5.1876 0.7013 24 6 4.3645 -5.9198 1.6391 25 6 4.2585 -5.6166 2.9677 26 6 3.4276 -4.5884 3.3913 27 6 2.6968 -3.8564 2.4817 28 6 2.7905 -4.1486 1.1242 29 1 -0.4851 0.8400 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.3319 -4.0495 -2.1292 33 1 3.3870 -5.4743 -3.5493 34 1 6.8960 -9.6210 -3.8866 35 1 8.5012 -11.3825 -3.0374 36 1 6.6541 -8.7577 0.3082 37 1 5.0129 -6.7210 1.3164 38 1 4.8250 -6.1814 3.6932 39 1 3.3534 -4.3603 4.4443 40 1 2.0527 -3.0586 2.8209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008102726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:43 Heat of formation + Delta-G solvation = 134.630013 kcal Electronic energy + Delta-G solvation = -25917.408570 eV Core-core repulsion = 22301.835926 eV Total energy + Delta-G solvation = -3615.572645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 366.056 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.76600 -39.41835 -37.84380 -36.48554 -33.61816 -32.20836 -30.79135 -29.62840 -29.26607 -27.96226 -26.68054 -26.05048 -23.91630 -22.97226 -21.87938 -21.22928 -20.14373 -19.24797 -18.87497 -18.09829 -17.07575 -16.78760 -16.09280 -15.89094 -15.63064 -14.91469 -14.68820 -14.59886 -14.08637 -13.90895 -13.44695 -13.39261 -13.16123 -13.12669 -13.10507 -12.87758 -12.54618 -12.39973 -12.04618 -11.76901 -11.49119 -11.30543 -11.18785 -11.04829 -10.88329 -10.83690 -10.42825 -10.16349 -10.09549 -9.63830 -9.58480 -9.30875 -9.07808 -8.80531 -8.73178 -8.17133 -7.56978 -6.81825 -6.31653 -4.42979 0.26439 0.96146 1.19742 1.37885 1.66265 1.68009 1.82214 2.11842 2.39643 2.92335 3.14643 3.23209 3.28686 3.63738 3.81088 3.97078 4.23528 4.55427 4.70583 4.93210 5.00014 5.11244 5.18677 5.28167 5.36548 5.44980 5.50854 5.59557 5.63746 5.78402 5.91100 5.94572 6.07207 6.12000 6.20918 6.34509 6.46210 6.61542 6.72137 6.90102 7.04235 7.16665 7.31121 7.47072 7.59138 7.79115 7.85406 7.97429 8.04309 8.65358 9.25294 10.73022 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.002409 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.395490 B =11622.311908 C =12937.597744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.234 3.766 10 N -0.443 5.443 11 C 0.108 3.892 12 C -0.160 4.160 13 C 0.181 3.819 14 C -0.265 4.265 15 S 0.067 5.933 16 C 0.134 3.866 17 C -0.044 4.044 18 C -0.119 4.119 19 C -0.213 4.213 20 S 0.122 5.878 21 C -0.158 4.158 22 N -0.449 5.449 23 C -0.084 4.084 24 C -0.070 4.070 25 C -0.158 4.158 26 C -0.117 4.117 27 C -0.110 4.110 28 C 0.102 3.898 29 H 0.268 0.732 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.144 0.856 35 H 0.169 0.831 36 H 0.177 0.823 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.415 -19.781 -4.161 23.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.084 0.916 9 C 0.116 3.884 10 N -0.119 5.119 11 C -0.027 4.027 12 C -0.170 4.170 13 C 0.051 3.949 14 C -0.404 4.404 15 S 0.323 5.677 16 C -0.145 4.145 17 C -0.060 4.060 18 C -0.150 4.150 19 C -0.348 4.348 20 S 0.386 5.614 21 C -0.299 4.299 22 N -0.163 5.163 23 C -0.089 4.089 24 C -0.088 4.088 25 C -0.177 4.177 26 C -0.136 4.136 27 C -0.130 4.130 28 C -0.005 4.005 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.182 0.818 33 H 0.195 0.805 34 H 0.161 0.839 35 H 0.187 0.813 36 H 0.195 0.805 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.088 -20.566 -3.610 24.644 hybrid contribution -0.985 2.561 -0.711 2.835 sum 12.103 -18.005 -4.321 22.121 Atomic orbital electron populations 1.69924 1.06077 1.27660 1.49105 1.24942 0.94945 0.99555 0.94287 0.86332 0.80161 0.82539 0.77907 1.19461 1.20623 1.20574 1.21391 0.93835 0.89733 1.53025 0.91570 1.19781 0.86990 0.81893 0.99735 1.44823 1.35981 1.27773 1.03318 1.21741 0.96236 0.92636 0.92098 1.17755 1.06822 1.01852 0.90564 1.17837 0.94050 0.93384 0.89612 1.26637 1.10016 1.06681 0.97044 1.84591 1.40643 1.30091 1.12406 1.25121 1.00281 0.98580 0.90516 1.16846 0.99431 0.96727 0.92978 1.20032 0.98515 0.96185 1.00285 1.25400 1.06103 1.05338 0.97985 1.84330 1.43046 1.30648 1.03423 1.26018 1.01500 1.00973 1.01369 1.66496 1.09528 1.05317 1.34975 1.18846 1.00177 0.98000 0.91853 1.20203 0.98267 0.98684 0.91688 1.20507 1.01902 0.99888 0.95403 1.20677 0.97875 0.96633 0.98425 1.20154 1.02066 1.01143 0.89652 1.18276 0.97350 0.95900 0.88999 0.92258 0.93315 0.93484 0.81815 0.80516 0.83857 0.81313 0.80534 0.86181 0.87011 0.86566 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -14.30 9.39 -34.44 -0.32 -14.63 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.23 5.63 5.74 -5.19 -0.03 5.60 16 10 N -0.44 -9.61 2.76 -115.39 -0.32 -9.93 16 11 C 0.11 2.05 10.82 -16.34 -0.18 1.88 16 12 C -0.16 -3.02 6.27 -103.13 -0.65 -3.66 16 13 C 0.18 3.03 6.66 -84.79 -0.56 2.47 16 14 C -0.26 -3.72 10.80 29.47 0.32 -3.40 16 15 S 0.07 0.80 22.79 -107.50 -2.45 -1.65 16 16 C 0.13 1.82 7.39 -14.37 -0.11 1.71 16 17 C -0.04 -0.50 5.79 -106.70 -0.62 -1.12 16 18 C -0.12 -1.07 9.75 -40.92 -0.40 -1.47 16 19 C -0.21 -1.56 11.18 28.91 0.32 -1.23 16 20 S 0.12 0.95 23.32 -107.50 -2.51 -1.56 16 21 C -0.16 -1.64 10.92 29.53 0.32 -1.32 16 22 N -0.45 -7.22 9.47 -7.93 -0.08 -7.30 16 23 C -0.08 -1.67 6.30 -104.97 -0.66 -2.33 16 24 C -0.07 -1.24 9.86 -39.69 -0.39 -1.63 16 25 C -0.16 -2.53 9.98 -39.93 -0.40 -2.93 16 26 C -0.12 -1.94 10.01 -39.55 -0.40 -2.34 16 27 C -0.11 -2.15 9.99 -39.41 -0.39 -2.54 16 28 C 0.10 2.17 6.80 -83.99 -0.57 1.59 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.18 8.12 -51.93 -0.42 0.76 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.16 2.62 7.63 -52.49 -0.40 2.22 16 33 H 0.18 2.12 7.60 -52.49 -0.40 1.72 16 34 H 0.14 1.08 7.75 -52.49 -0.41 0.67 16 35 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.18 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.12 1.98 7.38 -52.49 -0.39 1.59 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -29.61 378.59 -12.84 -42.45 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.10 Total: 4.00 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -4.81 Total: -23.69 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.34 Total: -40.91 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -4.96 Total: -3.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.61 -12.84 -42.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008102726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.080 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds