Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99947 * 2 1 4 4 H 1.48496 * 109.46920 * 239.99765 * 3 2 1 5 5 H 1.48506 * 109.46896 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47335 * 119.99567 * 3 2 1 7 7 C 1.39901 * 120.00108 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00235 * 175.56458 * 7 2 1 9 9 C 1.41157 * 120.00300 * 355.56482 * 7 2 1 10 10 C 1.40861 * 120.16351 * 214.78044 * 9 7 2 11 11 C 1.36377 * 119.82640 * 180.02562 * 10 9 7 12 12 C 1.39474 * 120.17065 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83639 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00206 * 35.28396 * 13 12 11 15 15 O 1.21285 * 119.99733 * 355.71069 * 14 13 12 16 16 C 1.50690 * 119.99985 * 175.71535 * 14 13 12 17 17 O 1.42908 * 109.46954 * 180.02562 * 16 14 13 18 18 C 1.35904 * 116.99841 * 179.97438 * 17 16 14 19 19 C 1.38752 * 120.05638 * 0.02562 * 18 17 16 20 20 C 1.38126 * 119.94506 * 179.97438 * 19 18 17 21 21 C 1.38289 * 120.05314 * 359.74345 * 20 19 18 22 22 C 1.38243 * 120.11081 * 0.51386 * 21 20 19 23 23 C 1.50696 * 119.97430 * 179.76397 * 22 21 20 24 24 F 1.39908 * 109.47156 * 269.72801 * 23 22 21 25 25 F 1.39903 * 109.47059 * 29.72278 * 23 22 21 26 26 F 1.39897 * 109.47708 * 149.72410 * 23 22 21 27 27 C 1.38167 * 120.05431 * 359.48869 * 22 21 20 28 28 C 1.39487 * 120.33278 * 0.25129 * 12 11 10 29 29 C 1.36380 * 120.16390 * 359.48695 * 28 12 11 30 30 H 0.96996 * 120.00243 * 0.02562 * 1 2 3 31 31 H 1.07996 * 120.09027 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91619 * 179.97438 * 11 10 9 33 33 H 0.97006 * 119.99955 * 215.29177 * 13 12 11 34 34 H 1.08994 * 109.47787 * 59.99699 * 16 14 13 35 35 H 1.08999 * 109.46961 * 299.99607 * 16 14 13 36 36 H 1.08004 * 120.02893 * 359.95875 * 19 18 17 37 37 H 1.08000 * 119.97431 * 180.02562 * 20 19 18 38 38 H 1.07995 * 119.94827 * 180.27685 * 21 20 19 39 39 H 1.08010 * 120.02607 * 180.22976 * 27 22 21 40 40 H 1.07995 * 119.91906 * 179.74491 * 28 12 11 41 41 H 1.07997 * 120.08457 * 180.25762 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6964 -1.2124 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0718 9 6 1.3058 -2.4322 0.0956 10 6 1.8650 -3.5179 0.7975 11 6 1.1805 -4.6943 0.8846 12 6 -0.0699 -4.8240 0.2805 13 7 -0.7625 -6.0284 0.3734 14 6 -0.6807 -6.7679 1.4971 15 8 0.0564 -6.4242 2.3969 16 6 -1.5051 -8.0216 1.6357 17 8 -1.2463 -8.6241 2.9055 18 6 -1.9151 -9.7720 3.1916 19 6 -2.8020 -10.3080 2.2689 20 6 -3.4802 -11.4751 2.5618 21 6 -3.2718 -12.1122 3.7714 22 6 -2.3927 -11.5773 4.6946 23 6 -2.1719 -12.2713 6.0139 24 9 -3.0835 -11.7828 6.9561 25 9 -2.3599 -13.6484 5.8536 26 9 -0.8676 -12.0272 6.4569 27 6 -1.7119 -10.4101 4.4063 28 6 -0.6276 -3.7552 -0.4211 29 6 0.0426 -2.5710 -0.5122 30 1 -0.4850 0.8400 -0.0004 31 1 2.8337 -3.4194 1.2647 32 1 1.6082 -5.5278 1.4220 33 1 -1.3037 -6.3353 -0.3709 34 1 -1.2412 -8.7198 0.8413 35 1 -2.5633 -7.7707 1.5620 36 1 -2.9622 -9.8129 1.3225 37 1 -4.1703 -11.8929 1.8438 38 1 -3.7996 -13.0270 3.9969 39 1 -1.0224 -9.9946 5.1263 40 1 -1.5945 -3.8644 -0.8897 41 1 -0.3923 -1.7430 -1.0522 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008125931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -168.063082 kcal Electronic energy + Delta-G solvation = -30373.490437 eV Core-core repulsion = 25382.855464 eV Total energy + Delta-G solvation = -4990.634973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.103 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.48931 -48.00552 -47.94394 -40.79685 -39.67126 -38.01280 -37.10407 -34.54575 -33.04527 -32.36568 -31.10947 -29.73569 -29.40463 -28.05257 -26.43464 -24.83813 -23.21258 -22.46734 -21.63258 -20.87728 -19.84279 -19.34522 -18.81491 -18.71908 -17.57854 -17.28916 -17.17797 -16.60654 -16.55624 -16.10964 -15.73167 -15.20856 -14.87107 -14.83210 -14.49463 -14.45280 -14.33091 -14.11680 -14.09898 -14.03996 -13.93126 -13.39992 -13.29567 -12.86218 -12.80027 -12.65288 -12.20644 -12.18613 -11.78685 -11.53736 -11.50754 -11.42147 -11.17614 -11.04741 -10.78097 -10.10364 -9.75988 -9.56441 -9.53644 -9.21882 -8.97227 -8.76462 -7.61776 -6.95365 -6.67247 -4.40188 0.42397 0.84834 2.15776 2.40011 2.52818 2.92775 3.01553 3.03385 3.06664 3.09179 3.24441 3.34271 3.63172 3.83187 3.94338 4.06833 4.22425 4.46780 4.56914 4.58160 4.63883 4.78877 4.81885 4.87233 4.93452 5.31989 5.58729 5.60354 5.74434 5.78128 6.00449 6.11386 6.36766 6.63098 6.78674 6.91511 7.00171 7.11984 7.23055 7.57006 7.63890 7.77772 7.99533 8.13389 8.25012 8.51708 8.60993 8.87056 8.92593 10.23792 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.001507 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.559392 B =18571.592183 C =19178.884103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C -0.002 4.002 13 N -0.645 5.645 14 C 0.498 3.502 15 O -0.505 6.505 16 C 0.042 3.958 17 O -0.281 6.281 18 C 0.136 3.864 19 C -0.181 4.181 20 C -0.078 4.078 21 C -0.114 4.114 22 C -0.144 4.144 23 C 0.511 3.489 24 F -0.175 7.175 25 F -0.176 7.176 26 F -0.174 7.174 27 C -0.102 4.102 28 C -0.118 4.118 29 C -0.142 4.142 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.397 0.603 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.092 0.908 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 -22.577 2.856 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.742 3.258 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.093 4.093 13 N -0.289 5.289 14 C 0.283 3.717 15 O -0.380 6.380 16 C -0.037 4.037 17 O -0.192 6.192 18 C 0.090 3.910 19 C -0.200 4.200 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.146 4.146 23 C 0.457 3.543 24 F -0.156 7.156 25 F -0.158 7.158 26 F -0.155 7.155 27 C -0.121 4.121 28 C -0.138 4.138 29 C -0.162 4.162 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.230 0.770 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.110 0.890 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.632 -22.067 3.690 24.359 hybrid contribution -0.175 0.473 -0.240 0.558 sum -9.807 -21.594 3.449 23.967 Atomic orbital electron populations 1.69744 1.07305 1.28929 1.37774 1.25894 0.94967 1.01238 0.92486 0.86228 0.79800 0.79993 0.79821 1.19014 1.20400 1.19047 1.19490 0.94781 0.90212 1.44532 0.90547 1.17744 0.92275 0.92013 0.88083 1.20813 1.01313 0.94900 1.05527 1.20406 0.92735 0.97916 0.99302 1.17205 0.94281 0.85543 1.12310 1.42760 1.49157 1.21447 1.15566 1.19859 0.84031 0.84722 0.83120 1.90758 1.37824 1.69834 1.39558 1.22592 1.00878 0.94871 0.85376 1.86222 1.62298 1.35207 1.35512 1.18845 0.91935 0.86574 0.93675 1.21566 0.99202 0.98737 1.00448 1.20941 0.98289 0.94124 0.96241 1.20846 0.98027 1.00698 0.93617 1.19676 1.02832 0.97919 0.94148 1.18202 0.74234 0.76765 0.85138 1.93242 1.67163 1.87661 1.67526 1.93193 1.94943 1.31944 1.95676 1.93220 1.37518 1.94009 1.90758 1.20131 1.01180 0.94311 0.96448 1.20299 0.98333 0.93042 1.02094 1.21195 0.97318 0.95536 1.02149 0.91006 0.88472 0.87449 0.76955 0.88966 0.88837 0.84276 0.84344 0.84513 0.83517 0.88986 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.71 10.60 55.55 0.59 -20.12 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 3 Si 0.92 18.73 29.56 -169.99 -5.03 13.71 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.06 9.02 -37.85 -0.34 -12.40 16 8 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -1.96 8.61 -39.79 -0.34 -2.30 16 12 C 0.00 -0.03 6.31 -83.57 -0.53 -0.56 16 13 N -0.64 -10.23 5.30 -9.74 -0.05 -10.28 16 14 C 0.50 8.06 7.74 -10.99 -0.09 7.98 16 15 O -0.51 -10.82 13.92 -14.36 -0.20 -11.02 16 16 C 0.04 0.44 5.22 36.00 0.19 0.63 16 17 O -0.28 -3.66 9.67 -39.35 -0.38 -4.04 16 18 C 0.14 1.42 6.69 -39.22 -0.26 1.16 16 19 C -0.18 -1.36 9.04 -39.43 -0.36 -1.71 16 20 C -0.08 -0.49 10.04 -39.60 -0.40 -0.89 16 21 C -0.11 -0.82 9.40 -39.56 -0.37 -1.19 16 22 C -0.14 -1.31 5.45 -104.65 -0.57 -1.88 16 23 C 0.51 4.72 3.36 36.00 0.12 4.84 16 24 F -0.17 -1.72 17.30 2.25 0.04 -1.68 16 25 F -0.18 -1.56 16.45 2.25 0.04 -1.52 16 26 F -0.17 -1.77 16.46 2.25 0.04 -1.73 16 27 C -0.10 -1.06 9.34 -39.44 -0.37 -1.42 16 28 C -0.12 -2.56 9.90 -39.79 -0.39 -2.95 16 29 C -0.14 -3.54 8.62 -39.26 -0.34 -3.88 16 30 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 31 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 32 H 0.11 2.49 6.22 -52.49 -0.33 2.17 16 33 H 0.40 4.47 8.82 -40.82 -0.36 4.11 16 34 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 36 H 0.14 0.70 6.30 -52.48 -0.33 0.37 16 37 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.14 0.73 7.59 -52.49 -0.40 0.33 16 39 H 0.15 1.53 7.60 -52.48 -0.40 1.13 16 40 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.13 3.41 6.13 -52.49 -0.32 3.09 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -31.61 368.34 -8.27 -39.88 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.75 Total: 7.64 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -5.12 Total: -16.38 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.54 Total: -30.40 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.58 Total: -15.06 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.11 Total: -4.93 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.61 -8.27 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008125931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.186 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds