Wall clock time and date at job start Tue Mar 31 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86805 * 119.99801 * 2 1 4 4 H 1.48499 * 109.46783 * 240.00069 * 3 2 1 5 5 H 1.48492 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46822 * 120.00328 * 3 2 1 7 7 C 1.39908 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00027 * 175.58765 * 7 2 1 9 9 C 1.41133 * 120.00195 * 355.58096 * 7 2 1 10 10 C 1.40875 * 120.16542 * 214.77517 * 9 7 2 11 11 C 1.36360 * 119.83297 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16677 * 0.02562 * 11 10 9 13 13 N 1.39123 * 119.83750 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99968 * 35.31873 * 13 12 11 15 15 O 1.21563 * 119.99692 * 355.71350 * 14 13 12 16 16 C 1.47793 * 119.99858 * 175.43746 * 14 13 12 17 17 C 1.39602 * 120.14788 * 0.02562 * 16 14 13 18 18 C 1.37950 * 119.84749 * 179.69879 * 17 16 14 19 19 C 1.38364 * 120.15037 * 0.57692 * 18 17 16 20 20 C 1.50693 * 119.85301 * 179.74206 * 19 18 17 21 21 N 1.46502 * 109.47262 * 269.97693 * 20 19 18 22 22 C 1.46771 * 124.35122 * 269.72742 * 21 20 19 23 23 C 1.54656 * 105.38208 * 162.85234 * 22 21 20 24 24 C 1.54627 * 101.68572 * 25.76482 * 23 22 21 25 25 C 1.34421 * 124.35227 * 90.02076 * 21 20 19 26 26 O 1.21277 * 124.93826 * 0.43600 * 25 21 20 27 27 C 1.38371 * 120.29667 * 359.71935 * 19 18 17 28 28 C 1.37949 * 120.14323 * 359.97438 * 27 19 18 29 29 C 1.39506 * 120.32482 * 0.24865 * 12 11 10 30 30 C 1.36365 * 120.16711 * 359.44607 * 29 12 11 31 31 H 0.97003 * 119.99767 * 359.97438 * 1 2 3 32 32 H 1.08008 * 120.08633 * 0.02562 * 10 9 7 33 33 H 1.08003 * 119.91861 * 179.97438 * 11 10 9 34 34 H 0.96993 * 120.00081 * 215.31893 * 13 12 11 35 35 H 1.07994 * 120.07332 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.92228 * 180.29012 * 18 17 16 37 37 H 1.08997 * 109.47524 * 29.97696 * 20 19 18 38 38 H 1.09002 * 109.47169 * 149.97989 * 20 19 18 39 39 H 1.09002 * 110.24415 * 281.98286 * 22 21 20 40 40 H 1.08997 * 110.24104 * 43.97922 * 22 21 20 41 41 H 1.09009 * 111.19326 * 267.59273 * 23 22 21 42 42 H 1.09000 * 110.85388 * 143.79129 * 23 22 21 43 43 H 1.09000 * 110.48516 * 216.30865 * 24 23 22 44 44 H 1.09004 * 110.59412 * 93.72452 * 24 23 22 45 45 H 1.07994 * 119.92770 * 179.97438 * 27 19 18 46 46 H 1.08007 * 120.07281 * 179.97438 * 28 27 19 47 47 H 1.08007 * 119.91643 * 179.73078 * 29 12 11 48 48 H 1.08001 * 120.08428 * 180.25303 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6964 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2130 -0.0725 9 6 1.3058 -2.4321 0.0931 10 6 1.8650 -3.5188 0.7939 11 6 1.1806 -4.6951 0.8797 12 6 -0.0701 -4.8242 0.2751 13 7 -0.7622 -6.0276 0.3665 14 6 -0.6812 -6.7680 1.4898 15 8 0.0570 -6.4242 2.3924 16 6 -1.4944 -7.9944 1.6267 17 6 -2.3471 -8.3892 0.5942 18 6 -3.0987 -9.5384 0.7260 19 6 -3.0178 -10.2929 1.8831 20 6 -3.8462 -11.5439 2.0222 21 7 -5.1399 -11.2088 2.6225 22 6 -5.4085 -11.2095 4.0654 23 6 -6.7096 -10.3920 4.2409 24 6 -7.3846 -10.5779 2.8622 25 6 -6.2351 -10.8665 1.9222 26 8 -6.2932 -10.7995 0.7127 27 6 -2.1793 -9.9039 2.9128 28 6 -1.4175 -8.7603 2.7914 29 6 -0.6277 -3.7543 -0.4254 30 6 0.0422 -2.5699 -0.5144 31 1 -0.4850 0.8401 0.0004 32 1 2.8333 -3.4205 1.2621 33 1 1.6081 -5.5292 1.4163 34 1 -1.3029 -6.3338 -0.3782 35 1 -2.4147 -7.7987 -0.3074 36 1 -3.7552 -9.8475 -0.0739 37 1 -4.0056 -11.9855 1.0386 38 1 -3.3235 -12.2567 2.6601 39 1 -5.5498 -12.2297 4.4222 40 1 -4.5888 -10.7316 4.6018 41 1 -6.4920 -9.3407 4.4301 42 1 -7.3261 -10.8100 5.0367 43 1 -7.9012 -9.6654 2.5643 44 1 -8.0788 -11.4179 2.8854 45 1 -2.1212 -10.4970 3.8134 46 1 -0.7638 -8.4575 3.5960 47 1 -1.5944 -3.8630 -0.8946 48 1 -0.3925 -1.7412 -1.0536 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126802.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:14 Heat of formation + Delta-G solvation = -17.705371 kcal Electronic energy + Delta-G solvation = -30550.064966 eV Core-core repulsion = 26341.358489 eV Total energy + Delta-G solvation = -4208.706477 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.86971 -40.12219 -38.69437 -37.16272 -36.70267 -34.51480 -34.03986 -32.96317 -31.16858 -31.01689 -29.57860 -28.86985 -27.97587 -26.91556 -24.95145 -22.93853 -22.91054 -22.19589 -21.44215 -20.76311 -19.87872 -19.61207 -17.93898 -17.30171 -17.17997 -17.03276 -16.41838 -15.96189 -15.42259 -15.21661 -15.06229 -14.75481 -14.65688 -14.17172 -14.14604 -13.93216 -13.74731 -13.63260 -13.32315 -13.15192 -12.99898 -12.65971 -12.56716 -12.32233 -12.14780 -11.97477 -11.90750 -11.70413 -11.47846 -11.36825 -11.19102 -11.11363 -11.02214 -10.73556 -10.17367 -10.06527 -9.51037 -9.46393 -9.24420 -9.15486 -9.14112 -8.95158 -8.88266 -7.55255 -6.86781 -6.62180 -4.34516 0.66195 1.22039 2.23546 2.49903 2.70453 3.07459 3.08584 3.10012 3.12265 3.29689 3.64834 3.91072 3.92384 3.98334 4.01413 4.33477 4.43774 4.46966 4.59791 4.69750 4.76955 4.83143 4.97614 4.99996 5.05645 5.13782 5.24265 5.25791 5.34740 5.42265 5.51759 5.60990 5.66740 5.84830 6.06420 6.12661 6.18429 6.24817 6.27624 6.44745 6.68904 6.71744 6.74891 6.92335 7.06350 7.19804 7.29226 7.63450 7.73434 7.80714 7.86013 8.05669 8.24192 8.31012 8.61014 8.71512 8.92096 8.99305 10.28764 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.001656 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.923237 B =16900.975536 C =17380.057514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.084 4.084 12 C 0.001 3.999 13 N -0.643 5.643 14 C 0.538 3.462 15 O -0.528 6.528 16 C -0.115 4.115 17 C -0.091 4.091 18 C -0.103 4.103 19 C -0.098 4.098 20 C 0.165 3.835 21 N -0.616 5.616 22 C 0.100 3.900 23 C -0.133 4.133 24 C -0.156 4.156 25 C 0.517 3.483 26 O -0.529 6.529 27 C -0.113 4.113 28 C -0.066 4.066 29 C -0.119 4.119 30 C -0.141 4.141 31 H 0.278 0.722 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.395 0.605 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.126 0.874 46 H 0.137 0.863 47 H 0.091 0.909 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 -22.874 6.910 27.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.091 4.091 13 N -0.285 5.285 14 C 0.326 3.674 15 O -0.406 6.406 16 C -0.118 4.118 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.099 4.099 20 C 0.044 3.956 21 N -0.350 5.350 22 C -0.023 4.023 23 C -0.170 4.170 24 C -0.196 4.196 25 C 0.305 3.695 26 O -0.405 6.405 27 C -0.131 4.131 28 C -0.085 4.085 29 C -0.140 4.140 30 C -0.161 4.161 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.230 0.770 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.144 0.856 46 H 0.155 0.845 47 H 0.109 0.891 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.059 -22.446 6.879 26.864 hybrid contribution 0.016 0.717 -0.194 0.743 sum -13.043 -21.729 6.686 26.210 Atomic orbital electron populations 1.69755 1.07289 1.28844 1.37931 1.25894 0.94960 1.01196 0.92561 0.86236 0.79786 0.80067 0.79776 1.19032 1.20433 1.19094 1.19469 0.94727 0.90207 1.44670 0.90598 1.17733 0.92281 0.92018 0.88185 1.20804 1.01254 0.94918 1.05578 1.20409 0.92714 0.97887 0.99384 1.17257 0.94310 0.85704 1.11843 1.42901 1.48437 1.21190 1.16004 1.18257 0.82948 0.83664 0.82538 1.90754 1.39126 1.70667 1.40005 1.20182 0.99116 0.96484 0.96014 1.21370 0.95073 0.96395 0.98118 1.21056 0.98794 0.94538 0.97790 1.20323 0.97356 0.97615 0.94631 1.20284 0.81641 0.93508 1.00172 1.48339 1.10298 1.68738 1.07617 1.22163 0.98489 1.00672 0.80958 1.22632 0.95731 1.01685 0.96999 1.22337 0.97384 1.04923 0.94961 1.20965 0.84758 0.75593 0.88223 1.90730 1.83921 1.52364 1.13497 1.20961 0.96796 0.96996 0.98393 1.21271 0.97344 0.93076 0.96784 1.20324 0.98360 0.93122 1.02144 1.21190 0.97293 0.95527 1.02109 0.91060 0.88531 0.87427 0.77034 0.85460 0.85192 0.88921 0.89199 0.90841 0.90139 0.89746 0.89081 0.87969 0.87830 0.85627 0.84492 0.89053 0.84978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.24 10.60 55.55 0.59 -20.66 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.12 29.56 -169.99 -5.03 14.09 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.35 9.02 -37.86 -0.34 -12.69 16 8 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.12 16 10 C -0.21 -5.27 9.74 -39.26 -0.38 -5.65 16 11 C -0.08 -2.05 8.61 -39.78 -0.34 -2.39 16 12 C 0.00 0.03 6.30 -83.60 -0.53 -0.50 16 13 N -0.64 -11.85 5.25 -10.61 -0.06 -11.91 16 14 C 0.54 9.98 7.60 -12.35 -0.09 9.88 16 15 O -0.53 -11.69 13.76 5.31 0.07 -11.62 16 16 C -0.11 -1.65 5.87 -104.97 -0.62 -2.26 16 17 C -0.09 -1.10 9.54 -39.18 -0.37 -1.47 16 18 C -0.10 -1.13 9.68 -39.64 -0.38 -1.51 16 19 C -0.10 -0.92 5.47 -104.53 -0.57 -1.50 16 20 C 0.17 1.20 6.05 -5.20 -0.03 1.17 16 21 N -0.62 -4.54 2.92 -173.67 -0.51 -5.05 16 22 C 0.10 0.43 7.36 -3.02 -0.02 0.41 16 23 C -0.13 -0.50 7.19 -25.00 -0.18 -0.68 16 24 C -0.16 -0.88 6.86 -26.75 -0.18 -1.07 16 25 C 0.52 4.91 8.02 -10.86 -0.09 4.83 16 26 O -0.53 -7.19 17.59 5.56 0.10 -7.09 16 27 C -0.11 -1.07 9.68 -39.64 -0.38 -1.45 16 28 C -0.07 -0.83 9.60 -39.18 -0.38 -1.20 16 29 C -0.12 -2.77 9.90 -39.78 -0.39 -3.16 16 30 C -0.14 -3.67 8.61 -39.26 -0.34 -4.01 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.10 2.34 8.06 -52.48 -0.42 1.92 16 33 H 0.11 2.59 6.22 -52.48 -0.33 2.26 16 34 H 0.39 5.84 6.86 -40.82 -0.28 5.56 16 35 H 0.13 1.34 6.41 -52.49 -0.34 1.00 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.09 0.73 7.86 -51.93 -0.41 0.32 16 38 H 0.09 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 47 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 48 H 0.13 3.53 6.13 -52.49 -0.32 3.21 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -33.89 403.52 -11.33 -45.22 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.27 Total: 10.41 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -6.32 Total: -19.49 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.03 Total: -37.61 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.89 -11.33 -45.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126802.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.516 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds