Wall clock time and date at job start Tue Mar 31 2020 07:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46492 * 120.00169 * 2 1 4 4 C 1.50702 * 109.47497 * 270.00399 * 3 2 1 5 5 H 1.07994 * 119.99671 * 359.97438 * 4 3 2 6 6 C 1.37871 * 119.99770 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99930 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00442 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47717 * 89.99649 * 8 6 4 10 10 H 1.48509 * 109.47073 * 209.99922 * 8 6 4 11 11 H 1.48499 * 109.46968 * 329.99298 * 8 6 4 12 12 C 1.34775 * 119.99658 * 180.02562 * 2 1 3 13 13 O 1.21284 * 120.00074 * 179.97438 * 12 2 1 14 14 C 1.50707 * 120.00135 * 359.97438 * 12 2 1 15 15 S 1.80993 * 109.46980 * 180.02562 * 14 12 2 16 16 C 1.76198 * 100.00143 * 180.02562 * 15 14 12 17 17 N 1.31509 * 125.97783 * 0.33782 * 16 15 14 18 18 C 1.34095 * 109.64364 * 180.15116 * 17 16 15 19 19 C 1.48378 * 125.55646 * 179.82326 * 18 17 16 20 20 C 1.39346 * 120.10834 * 179.71781 * 19 18 17 21 21 C 1.37996 * 119.89463 * 180.02562 * 20 19 18 22 22 C 1.38438 * 120.10477 * 0.26094 * 21 20 19 23 23 Cl 1.73605 * 119.89044 * 179.74375 * 22 21 20 24 24 C 1.38449 * 120.21741 * 359.47914 * 22 21 20 25 25 C 1.37991 * 120.10803 * 0.52065 * 24 22 21 26 26 N 1.31377 * 108.88685 * 359.55806 * 18 17 16 27 27 N 1.35165 * 125.98424 * 180.02562 * 16 15 14 28 28 H 0.97006 * 126.75003 * 359.97438 * 27 16 15 29 29 H 1.08998 * 109.47146 * 270.00009 * 1 2 3 30 30 H 1.09004 * 109.46762 * 29.99504 * 1 2 3 31 31 H 1.09001 * 109.47619 * 149.99266 * 1 2 3 32 32 H 1.08999 * 109.47004 * 30.00598 * 3 2 1 33 33 H 1.09002 * 109.47075 * 149.99855 * 3 2 1 34 34 H 0.97001 * 120.00697 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46810 * 60.00219 * 14 12 2 36 36 H 1.08998 * 109.47010 * 300.00476 * 14 12 2 37 37 H 1.07999 * 120.05298 * 359.97438 * 20 19 18 38 38 H 1.08002 * 119.94514 * 179.97438 * 21 20 19 39 39 H 1.07999 * 119.94350 * 180.23751 * 24 22 21 40 40 H 1.07992 * 120.05365 * 179.76460 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1260 2.8780 -1.6726 7 7 3.3456 3.2575 -2.9125 8 14 3.7330 3.9291 -0.2527 9 1 5.1065 3.5081 0.1232 10 1 3.7479 5.3560 -0.6642 11 1 2.8271 3.7592 0.9116 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 16 2.5614 -3.8481 -0.0005 16 6 1.4413 -5.2082 -0.0013 17 7 0.1287 -5.1281 -0.0080 18 6 -0.3982 -6.3612 -0.0030 19 6 -1.8473 -6.6803 -0.0042 20 6 -2.2707 -8.0079 -0.0044 21 6 -3.6194 -8.2997 -0.0061 22 6 -4.5513 -7.2759 -0.0129 23 17 -6.2467 -7.6493 -0.0217 24 6 -4.1357 -5.9553 -0.0073 25 6 -2.7892 -5.6534 -0.0056 26 7 0.5777 -7.2407 -0.0026 27 7 1.7808 -6.5166 -0.0011 28 1 2.6789 -6.8832 -0.0008 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6085 2.0283 0.5139 33 1 3.1499 1.1383 0.5139 34 1 3.8225 4.0834 -3.0898 35 1 0.7583 -2.5298 -0.8903 36 1 0.7589 -2.5302 0.8896 37 1 -1.5444 -8.8072 -0.0042 38 1 -3.9485 -9.3283 -0.0067 39 1 -4.8665 -5.1601 -0.0088 40 1 -2.4660 -4.6230 -0.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008374708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:14 Heat of formation + Delta-G solvation = 78.661608 kcal Electronic energy + Delta-G solvation = -26068.771699 eV Core-core repulsion = 22037.879113 eV Total energy + Delta-G solvation = -4030.892586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.066 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -42.23572 -39.54132 -39.22410 -36.89539 -35.15104 -33.44477 -32.69680 -32.29411 -31.46847 -30.39613 -30.10514 -27.99974 -25.96851 -24.37769 -23.76227 -22.72215 -22.34326 -20.86584 -19.50229 -18.47377 -17.51805 -17.05756 -16.78873 -16.65988 -16.04347 -16.02471 -15.60297 -15.32213 -15.28415 -14.42581 -14.18841 -13.99652 -13.94368 -13.90814 -13.26679 -13.02599 -12.54896 -12.40160 -12.30732 -12.26215 -12.15567 -12.11715 -12.00214 -11.60400 -11.25437 -11.01912 -10.86830 -10.77819 -10.59765 -10.58094 -10.49268 -10.22274 -9.64496 -9.50530 -9.37557 -8.92497 -8.65068 -8.01020 -7.86726 -6.14575 -4.14565 0.28787 0.71156 0.86523 1.25776 1.68359 1.75252 2.45287 2.47195 3.02107 3.24910 3.30679 3.32697 3.38359 3.63409 3.75928 4.15653 4.33906 4.44465 4.48343 4.72550 4.84542 5.00440 5.01798 5.18126 5.18367 5.27767 5.41024 5.52753 5.53226 5.74812 5.77071 5.79064 5.97217 6.01912 6.07580 6.27644 6.52059 6.54919 6.81426 7.12557 7.51800 7.55597 7.98022 8.36798 8.64878 8.88300 9.44465 10.98527 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.013563 B = 0.001893 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.881711 B =14790.769323 C =16435.643050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.587 5.587 3 C 0.216 3.784 4 C -0.533 4.533 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.523 3.477 13 O -0.528 6.528 14 C -0.139 4.139 15 S 0.093 5.907 16 C 0.255 3.745 17 N -0.533 5.533 18 C 0.273 3.727 19 C -0.007 4.007 20 C -0.072 4.072 21 C -0.115 4.115 22 C -0.022 4.022 23 Cl -0.068 7.068 24 C -0.113 4.113 25 C -0.062 4.062 26 N -0.299 5.299 27 N -0.462 5.462 28 H 0.447 0.553 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.596 -22.781 8.226 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.318 5.318 3 C 0.096 3.904 4 C -0.571 4.571 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.307 3.693 13 O -0.405 6.405 14 C -0.291 4.291 15 S 0.319 5.681 16 C -0.130 4.130 17 N -0.266 5.266 18 C -0.009 4.009 19 C -0.010 4.010 20 C -0.093 4.093 21 C -0.134 4.134 22 C -0.050 4.050 23 Cl -0.039 7.039 24 C -0.132 4.132 25 C -0.082 4.082 26 N -0.130 5.130 27 N -0.183 5.183 28 H 0.294 0.706 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.142 -23.062 8.107 27.754 hybrid contribution -0.533 0.467 0.476 0.853 sum -13.675 -22.595 8.583 27.770 Atomic orbital electron populations 1.21780 0.80350 1.03493 1.00946 1.47736 1.06626 1.06592 1.70854 1.19755 0.92532 0.79491 0.98669 1.21286 1.37401 1.07318 0.91087 0.90650 1.24856 0.95166 0.97326 0.95620 1.69890 1.41175 1.23545 1.18665 0.86850 0.80156 0.79837 0.82839 1.19848 1.21002 1.19040 1.19353 0.87665 0.84063 0.78227 1.90730 1.13198 1.86468 1.50154 1.23886 1.01750 0.94322 1.09144 1.86629 1.01144 0.89385 1.90917 1.27006 0.95701 0.91562 0.98725 1.71050 1.04213 1.24227 1.27119 1.22162 0.93843 0.86602 0.98302 1.17515 0.86485 0.93733 1.03227 1.21164 0.95388 0.95665 0.97053 1.20967 0.91777 0.99150 1.01457 1.21129 0.85242 0.94819 1.03790 1.98386 1.13962 1.94837 1.96761 1.21048 0.96232 0.94879 1.01048 1.21234 0.91098 1.00124 0.95758 1.78046 0.89742 1.18171 1.27041 1.47759 1.09129 1.03233 1.58135 0.70577 0.93131 0.90094 0.91798 0.94803 0.94303 0.92460 0.85661 0.85927 0.84147 0.84337 0.84133 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.24 59.85 0.61 1.69 16 2 N -0.59 -11.17 2.86 -182.95 -0.52 -11.69 16 3 C 0.22 5.00 4.23 -5.20 -0.02 4.98 16 4 C -0.53 -14.74 9.94 -34.44 -0.34 -15.08 16 5 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 8 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 12 C 0.52 9.73 7.69 -10.98 -0.08 9.64 16 13 O -0.53 -11.95 15.44 5.55 0.09 -11.86 16 14 C -0.14 -1.86 4.24 36.01 0.15 -1.71 16 15 S 0.09 1.19 21.45 -107.50 -2.31 -1.12 16 16 C 0.26 3.05 8.30 -89.42 -0.74 2.31 16 17 N -0.53 -6.70 10.19 -11.26 -0.11 -6.81 16 18 C 0.27 3.29 7.77 -156.64 -1.22 2.07 16 19 C -0.01 -0.07 5.88 -104.90 -0.62 -0.68 16 20 C -0.07 -0.61 9.68 -39.26 -0.38 -0.99 16 21 C -0.11 -0.84 9.81 -39.60 -0.39 -1.23 16 22 C -0.02 -0.17 6.32 -39.43 -0.25 -0.42 16 23 Cl -0.07 -0.50 28.95 -51.86 -1.50 -2.01 16 24 C -0.11 -0.87 9.81 -39.59 -0.39 -1.26 16 25 C -0.06 -0.55 9.68 -39.26 -0.38 -0.93 16 26 N -0.30 -3.55 12.40 32.10 0.40 -3.15 16 27 N -0.46 -4.84 7.47 30.44 0.23 -4.61 16 28 H 0.45 3.23 8.96 -182.35 -1.63 1.59 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.55 7.40 -51.92 -0.38 1.17 16 36 H 0.12 1.38 8.11 -51.92 -0.42 0.96 16 37 H 0.14 1.07 7.83 -52.49 -0.41 0.65 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.15 1.24 7.83 -52.49 -0.41 0.83 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -34.27 379.25 -11.66 -45.93 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.60 Total: -0.81 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.14 Total: 0.37 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.76 Total: -52.46 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.31 Total: -1.12 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.27 -11.66 -45.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008374708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.587 kcal (2) G-P(sol) polarization free energy of solvation -34.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds