Wall clock time and date at job start Tue Mar 31 2020 07:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46863 * 2 1 4 4 C 1.35952 * 116.99881 * 180.02562 * 3 2 1 5 5 C 1.38060 * 119.99434 * 0.23269 * 4 3 2 6 6 C 1.40067 * 119.82781 * 180.25394 * 5 4 3 7 7 C 1.46763 * 120.08336 * 179.78832 * 6 5 4 8 8 C 1.35822 * 119.99615 * 222.66906 * 7 6 5 9 9 S 1.77489 * 127.96455 * 188.44142 * 8 7 6 10 10 C 1.77221 * 94.57152 * 179.97438 * 9 8 7 11 11 S 1.71204 * 126.55207 * 180.02562 * 10 9 8 12 12 N 1.33790 * 106.89521 * 359.97438 * 10 9 8 13 13 N 1.36608 * 120.23880 * 179.97438 * 12 10 9 14 14 C 1.32256 * 119.52185 * 0.25990 * 12 10 9 15 15 O 1.21716 * 122.52698 * 179.71577 * 14 12 10 16 16 C 1.40127 * 119.82642 * 359.51552 * 6 5 4 17 17 C 1.37626 * 119.99070 * 0.25117 * 16 6 5 18 18 C 1.39074 * 120.17215 * 359.97438 * 17 16 6 19 19 O 1.35611 * 119.91795 * 180.02562 * 18 17 16 20 20 C 1.34759 * 116.99576 * 5.62374 * 19 18 17 21 21 H 1.07999 * 120.00096 * 354.93132 * 20 19 18 22 22 C 1.38677 * 119.99996 * 174.93478 * 20 19 18 23 23 N 1.31537 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99886 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47093 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46964 * 119.99991 * 24 22 20 27 27 H 1.48498 * 109.46926 * 239.99600 * 24 22 20 28 28 H 1.09000 * 109.47251 * 60.00243 * 1 2 3 29 29 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47067 * 300.00222 * 1 2 3 31 31 H 1.09004 * 109.47100 * 240.00255 * 2 1 3 32 32 H 1.09000 * 109.47251 * 119.99757 * 2 1 3 33 33 H 1.07997 * 120.08548 * 0.04346 * 5 4 3 34 34 H 1.08001 * 120.00170 * 42.67407 * 7 6 5 35 35 H 1.00900 * 111.00042 * 0.02562 * 13 12 10 36 36 H 1.00893 * 110.99842 * 123.98630 * 13 12 10 37 37 H 1.08003 * 120.00477 * 180.27635 * 16 6 5 38 38 H 1.07995 * 119.91396 * 180.02562 * 17 16 6 39 39 H 0.97000 * 119.99635 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3541 1.5255 -0.0005 5 6 4.1950 0.4305 -0.0059 6 6 5.5831 0.6181 -0.0011 7 6 6.4822 -0.5419 -0.0021 8 6 7.5793 -0.5513 0.7985 9 16 8.9055 -1.7307 0.8197 10 6 9.7915 -0.9237 2.1252 11 16 11.2775 -1.4259 2.8113 12 7 9.0778 0.1537 2.4713 13 7 9.5184 0.9805 3.4655 14 6 7.9398 0.4095 1.8479 15 8 7.2450 1.3706 2.1219 16 6 6.1110 1.9161 -0.0011 17 6 5.2660 3.0024 -0.0006 18 6 3.8878 2.8160 -0.0007 19 8 3.0599 3.8900 -0.0007 20 6 3.6329 5.1040 -0.1184 21 1 4.7091 5.1949 -0.1247 22 6 2.8408 6.2367 -0.2313 23 7 1.5301 6.1260 -0.2241 24 14 3.6352 7.9196 -0.3937 25 1 5.1128 7.7734 -0.3747 26 1 3.2154 8.5436 -1.6741 27 1 3.2087 8.7796 0.7393 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7837 -0.5680 -0.0104 34 1 6.2714 -1.3879 -0.6394 35 1 10.3940 0.6539 3.8460 36 1 9.5992 1.9308 3.1363 37 1 7.1808 2.0641 -0.0019 38 1 5.6742 4.0023 -0.0010 39 1 0.9761 6.9183 -0.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009235029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:11 Heat of formation + Delta-G solvation = 26.315510 kcal Electronic energy + Delta-G solvation = -27496.402518 eV Core-core repulsion = 23432.990990 eV Total energy + Delta-G solvation = -4063.411528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.86147 -39.90648 -37.98425 -37.84479 -36.53404 -33.89170 -32.73818 -31.93964 -31.40770 -29.63602 -28.43326 -27.15596 -25.76999 -24.26616 -23.55916 -21.82924 -21.32211 -20.11038 -19.34161 -18.67577 -18.37641 -17.65645 -17.25570 -16.47195 -16.24313 -15.85014 -15.71359 -15.30074 -15.20482 -14.77655 -14.48000 -14.18822 -13.98576 -13.66610 -13.40869 -13.04760 -12.69940 -12.57750 -12.40578 -12.36103 -12.03767 -11.85694 -11.66811 -11.56366 -11.39280 -11.30991 -11.10882 -10.81068 -10.63781 -10.55368 -10.32827 -10.03516 -9.79286 -9.18801 -8.76127 -8.29773 -8.26738 -8.01563 -7.07878 -6.84978 -4.28919 -0.65442 0.39829 0.64404 1.19873 1.36757 1.93627 1.97797 2.14177 2.60929 2.94168 2.94634 3.01209 3.66760 3.68252 3.76356 4.12631 4.22204 4.69336 4.78843 4.83349 5.11946 5.14451 5.28072 5.33728 5.39366 5.49729 5.55732 5.67851 5.77650 5.97409 6.01521 6.09098 6.24270 6.29149 6.31997 6.50533 6.60814 6.74061 6.90163 7.04854 7.30952 7.36851 7.56947 7.95898 8.57322 9.24703 10.29350 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.010336 B = 0.002801 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.281857 B = 9993.840987 C =12191.512989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.301 6.301 4 C 0.054 3.946 5 C -0.126 4.126 6 C -0.196 4.196 7 C 0.148 3.852 8 C -0.322 4.322 9 S 0.126 5.874 10 C 0.246 3.754 11 S -0.437 6.437 12 N -0.344 5.344 13 N -0.594 5.594 14 C 0.538 3.462 15 O -0.424 6.424 16 C -0.001 4.001 17 C -0.228 4.228 18 C 0.156 3.844 19 O -0.133 6.133 20 C -0.380 4.380 21 H 0.103 0.897 22 C 0.041 3.959 23 N -0.831 5.831 24 Si 0.948 3.052 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.125 0.875 34 H 0.145 0.855 35 H 0.386 0.614 36 H 0.368 0.632 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 -11.792 -1.282 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.215 6.215 4 C 0.009 3.991 5 C -0.146 4.146 6 C -0.200 4.200 7 C 0.122 3.878 8 C -0.441 4.441 9 S 0.364 5.636 10 C -0.112 4.112 11 S -0.305 6.305 12 N -0.149 5.149 13 N -0.229 5.229 14 C 0.326 3.674 15 O -0.294 6.294 16 C -0.020 4.020 17 C -0.248 4.248 18 C 0.097 3.903 19 O -0.032 6.032 20 C -0.455 4.455 21 H 0.120 0.880 22 C -0.168 4.168 23 N -0.461 5.461 24 Si 0.772 3.228 25 H -0.186 1.186 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.209 0.791 36 H 0.186 0.814 37 H 0.124 0.876 38 H 0.155 0.845 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.793 -12.320 -0.912 14.099 hybrid contribution 0.465 2.141 0.025 2.191 sum 7.259 -10.180 -0.886 12.534 Atomic orbital electron populations 1.21735 0.93283 1.01986 1.03763 1.22638 0.95665 0.83286 1.00416 1.86239 1.18392 1.27251 1.89668 1.17888 0.82590 0.91122 1.07503 1.20678 0.92074 0.96733 1.05110 1.17872 0.91734 0.91593 1.18778 1.21959 0.85788 0.94590 0.85448 1.23320 1.06798 1.04522 1.09433 1.85808 1.14541 1.29628 1.33667 1.28734 0.97901 0.89936 0.94623 1.93020 1.04518 1.72213 1.60711 1.44246 1.19435 1.20977 1.30220 1.60418 1.40755 1.02950 1.18824 1.17861 0.79623 0.87244 0.82702 1.91042 1.47658 1.26808 1.63866 1.20688 0.98054 0.90799 0.92453 1.20725 0.91440 0.99775 1.12820 1.18909 0.89492 0.86109 0.95746 1.83962 1.33684 1.12749 1.72803 1.21746 0.93491 0.80195 1.50069 0.88004 1.25522 0.95446 1.00000 0.95796 1.70059 1.03731 1.31376 1.40980 0.85522 0.79352 0.79243 0.78719 1.18601 1.19635 1.19630 0.91515 0.91028 0.91557 0.92765 0.92841 0.85757 0.83736 0.79084 0.81356 0.87560 0.84509 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.16 0.38 -1.42 16 2 C 0.06 0.77 5.46 37.16 0.20 0.97 16 3 O -0.30 -5.98 9.92 -34.21 -0.34 -6.32 16 4 C 0.05 1.08 6.70 -39.12 -0.26 0.82 16 5 C -0.13 -2.02 8.78 -38.96 -0.34 -2.36 16 6 C -0.20 -3.02 5.20 -105.06 -0.55 -3.56 16 7 C 0.15 1.71 9.84 -37.00 -0.36 1.35 16 8 C -0.32 -3.96 6.31 -37.00 -0.23 -4.20 16 9 S 0.13 1.34 23.18 -107.50 -2.49 -1.15 16 10 C 0.25 3.13 7.70 53.62 0.41 3.54 16 11 S -0.44 -6.05 29.56 -107.50 -3.18 -9.23 16 12 N -0.34 -4.51 3.36 -13.27 -0.04 -4.55 16 13 N -0.59 -6.98 9.96 60.35 0.60 -6.38 16 14 C 0.54 7.83 7.12 -13.92 -0.10 7.73 16 15 O -0.42 -7.41 13.55 5.17 0.07 -7.34 16 16 C 0.00 -0.02 6.99 -39.10 -0.27 -0.29 16 17 C -0.23 -4.60 9.14 -39.49 -0.36 -4.96 16 18 C 0.16 3.54 6.67 -38.75 -0.26 3.29 16 19 O -0.13 -3.56 9.52 -13.94 -0.13 -3.69 16 20 C -0.38 -9.73 9.48 30.89 0.29 -9.44 16 21 H 0.10 2.38 5.18 -52.49 -0.27 2.11 16 22 C 0.04 1.03 5.49 -17.52 -0.10 0.94 16 23 N -0.83 -22.44 13.67 55.48 0.76 -21.68 16 24 Si 0.95 18.66 29.55 -169.99 -5.02 13.64 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 32 H 0.05 0.67 7.67 -51.93 -0.40 0.27 16 33 H 0.12 1.56 6.28 -52.49 -0.33 1.23 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.39 4.09 7.19 -181.36 -1.30 2.78 16 36 H 0.37 3.74 9.05 -181.37 -1.64 2.09 16 37 H 0.11 1.69 6.82 -52.48 -0.36 1.33 16 38 H 0.14 2.74 5.61 -52.49 -0.29 2.44 16 39 H 0.28 6.78 8.31 -40.82 -0.34 6.45 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -30.67 365.01 -11.65 -42.32 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.82 Total: 6.49 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.55 Total: -7.60 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 1.32 Total: -32.62 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.40 Total: -17.34 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -5.67 Total: -10.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.67 -11.65 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009235029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.633 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds