Wall clock time and date at job start Tue Mar 31 2020 06:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30668 * 119.49594 * 2 1 4 4 N 1.39619 * 120.56677 * 180.02562 * 3 2 1 5 5 C 1.35061 * 134.00680 * 179.68693 * 4 3 2 6 6 N 1.30983 * 107.67616 * 179.97438 * 5 4 3 7 7 N 1.28744 * 110.22785 * 0.34227 * 6 5 4 8 8 C 1.32300 * 109.26201 * 359.78580 * 7 6 5 9 9 C 1.40646 * 133.94287 * 179.97438 * 8 7 6 10 10 C 1.50699 * 120.48755 * 0.07570 * 9 8 7 11 11 C 1.36166 * 119.02610 * 180.02562 * 9 8 7 12 12 C 1.50706 * 119.91099 * 180.02562 * 11 9 8 13 13 C 1.53008 * 109.47000 * 270.02190 * 12 11 9 14 14 C 1.50692 * 109.47000 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00388 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99930 * 179.97438 * 14 13 12 17 17 C 1.39238 * 120.00174 * 175.70537 * 16 14 13 18 18 C 1.39478 * 119.83449 * 215.01224 * 17 16 14 19 19 C 1.36375 * 120.16781 * 179.76470 * 18 17 16 20 20 C 1.40873 * 119.82996 * 0.51241 * 19 18 17 21 21 C 1.41143 * 120.16526 * 179.72184 * 20 19 18 22 22 H 1.08004 * 120.00048 * 214.80583 * 21 20 19 23 23 C 1.39907 * 120.00344 * 34.80109 * 21 20 19 24 24 N 1.30873 * 119.99975 * 355.56287 * 23 21 20 25 25 Si 1.86796 * 120.00263 * 175.55690 * 23 21 20 26 26 H 1.48501 * 109.47228 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46927 * 120.00292 * 25 23 21 28 28 H 1.48504 * 109.47373 * 240.00406 * 25 23 21 29 29 C 1.40864 * 119.66919 * 359.74359 * 20 19 18 30 30 C 1.36378 * 119.83136 * 0.02562 * 29 20 19 31 31 H 1.08999 * 109.47459 * 89.99386 * 1 2 3 32 32 H 1.09001 * 109.46955 * 209.99541 * 1 2 3 33 33 H 1.08998 * 109.46890 * 329.99034 * 1 2 3 34 34 H 1.07997 * 126.16253 * 0.03159 * 5 4 3 35 35 H 1.08994 * 109.46991 * 269.95172 * 10 9 8 36 36 H 1.08999 * 109.47277 * 29.95421 * 10 9 8 37 37 H 1.09002 * 109.47312 * 149.95685 * 10 9 8 38 38 H 1.08999 * 109.47115 * 30.01625 * 12 11 9 39 39 H 1.08996 * 109.47269 * 150.02481 * 12 11 9 40 40 H 1.08994 * 109.46728 * 300.00142 * 13 12 11 41 41 H 1.08995 * 109.46737 * 59.99513 * 13 12 11 42 42 H 0.97003 * 119.99594 * 355.71006 * 16 14 13 43 43 H 1.08003 * 119.91876 * 0.02562 * 18 17 16 44 44 H 1.08005 * 120.08988 * 180.25657 * 19 18 17 45 45 H 0.96998 * 120.00112 * 179.97438 * 24 23 21 46 46 H 1.08000 * 120.08649 * 179.97438 * 29 20 19 47 47 H 1.08003 * 119.92110 * 179.97438 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1504 1.1373 0.0000 4 7 3.5463 1.1634 -0.0005 5 6 4.4663 2.1522 -0.0060 6 7 5.6509 1.5933 -0.0028 7 7 5.5380 0.3108 -0.0029 8 6 4.2556 -0.0144 -0.0015 9 6 3.5585 -1.2360 -0.0014 10 6 4.3074 -2.5437 -0.0015 11 6 2.1969 -1.2197 -0.0003 12 6 1.4298 -2.5169 0.0005 13 6 1.1695 -2.9562 -1.4419 14 6 0.4030 -4.2537 -1.4411 15 8 0.0956 -4.7759 -0.3906 16 7 0.0590 -4.8338 -2.6080 17 6 -0.5699 -6.0760 -2.6092 18 6 -0.2981 -6.9905 -3.6267 19 6 -0.9067 -8.2109 -3.6318 20 6 -1.8201 -8.5428 -2.6120 21 6 -2.4584 -9.8017 -2.6137 22 1 -3.4756 -9.8918 -2.2620 23 6 -1.7735 -10.9327 -3.0710 24 7 -0.5731 -10.8104 -3.5778 25 14 -2.5724 -12.6175 -2.9581 26 1 -3.9214 -12.4860 -2.3514 27 1 -2.6966 -13.1986 -4.3190 28 1 -1.7344 -13.5072 -2.1145 29 6 -2.0935 -7.6119 -1.5908 30 6 -1.4736 -6.3972 -1.5963 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 4.2621 3.2127 -0.0110 35 1 4.4871 -2.8594 -1.0291 36 1 5.2607 -2.4165 0.5116 37 1 3.7161 -3.3011 0.5131 38 1 2.0113 -3.2825 0.5141 39 1 0.4791 -2.3765 0.5147 40 1 0.5881 -2.1906 -1.9555 41 1 2.1202 -3.0965 -1.9561 42 1 0.2497 -4.3859 -3.4471 43 1 0.3993 -6.7331 -4.4101 44 1 -0.6921 -8.9196 -4.4181 45 1 -0.0982 -11.5946 -3.8945 46 1 -2.7929 -7.8591 -0.8059 47 1 -1.6825 -5.6822 -0.8143 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000009721429.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:12 Heat of formation + Delta-G solvation = 118.162953 kcal Electronic energy + Delta-G solvation = -30963.655979 eV Core-core repulsion = 26727.708035 eV Total energy + Delta-G solvation = -4235.947944 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.72022 -40.25143 -39.51229 -37.40895 -35.99998 -34.53617 -34.16248 -33.05534 -32.63101 -30.29402 -29.64568 -29.28646 -28.89572 -28.17536 -25.96577 -24.56189 -23.23246 -22.55970 -21.85733 -21.49861 -20.74647 -19.67375 -19.28921 -17.76597 -17.40962 -17.13585 -16.86668 -16.37939 -16.02412 -15.53188 -15.21104 -14.84034 -14.60946 -14.27827 -14.00378 -13.85460 -13.83442 -13.55580 -13.23573 -13.16503 -12.86058 -12.73098 -12.67880 -12.54286 -12.38272 -12.18804 -12.10879 -11.75434 -11.44075 -11.31365 -11.22768 -11.18442 -11.04063 -10.99649 -10.78307 -10.70540 -10.28307 -10.07532 -9.55165 -9.50997 -9.22133 -8.95852 -8.83710 -7.61054 -6.93071 -6.66997 -4.39694 -0.17831 0.65469 1.28699 2.20453 2.46327 2.59438 2.94715 3.03098 3.07035 3.12032 3.24928 3.37774 3.43669 3.66336 3.77674 3.94186 4.17356 4.25067 4.59385 4.64100 4.67996 4.72910 4.77791 4.85553 4.93320 4.95363 5.07722 5.16871 5.20607 5.30209 5.34542 5.45711 5.47718 5.60351 5.67655 5.68141 5.82796 6.01312 6.12907 6.37481 6.68179 6.84436 6.95225 7.01320 7.14535 7.23751 7.57844 7.67432 7.79532 8.00885 8.01583 8.18578 8.25689 8.55984 8.65761 8.87721 8.94018 10.24043 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.024903 B = 0.001630 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.092925 B =17175.206176 C =17747.191230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.187 3.813 3 N -0.268 5.268 4 N -0.300 5.300 5 C 0.177 3.823 6 N -0.264 5.264 7 N -0.254 5.254 8 C 0.144 3.856 9 C 0.031 3.969 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.064 4.064 13 C -0.135 4.135 14 C 0.498 3.502 15 O -0.531 6.531 16 N -0.651 5.651 17 C 0.001 3.999 18 C -0.121 4.121 19 C -0.142 4.142 20 C 0.100 3.900 21 C -0.460 4.460 22 H 0.077 0.923 23 C 0.069 3.931 24 N -0.811 5.811 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.274 1.274 29 C -0.206 4.206 30 C -0.085 4.085 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.396 0.604 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.277 0.723 46 H 0.096 0.904 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 20.245 3.360 20.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.013 3.987 3 N -0.081 5.081 4 N -0.075 5.075 5 C -0.108 4.108 6 N -0.107 5.107 7 N -0.102 5.102 8 C -0.110 4.110 9 C 0.021 3.979 10 C -0.178 4.178 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.176 4.176 14 C 0.285 3.715 15 O -0.408 6.408 16 N -0.293 5.293 17 C -0.092 4.092 18 C -0.141 4.141 19 C -0.161 4.161 20 C 0.097 3.903 21 C -0.491 4.491 22 H 0.095 0.905 23 C -0.146 4.146 24 N -0.438 5.438 25 Si 0.740 3.260 26 H -0.186 1.186 27 H -0.200 1.200 28 H -0.200 1.200 29 C -0.226 4.226 30 C -0.105 4.105 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.229 0.771 43 H 0.109 0.891 44 H 0.149 0.851 45 H 0.088 0.912 46 H 0.114 0.886 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.829 20.725 4.023 21.902 hybrid contribution -1.053 -0.953 -0.457 1.492 sum 4.776 19.772 3.566 20.651 Atomic orbital electron populations 1.20984 0.84847 1.05606 1.05137 1.22640 0.98529 0.88317 0.89227 1.75649 0.85565 1.24863 1.22063 1.47770 1.04887 1.07560 1.47331 1.26251 0.82234 0.96567 1.05750 1.74560 1.19005 1.00551 1.16584 1.74968 1.11627 1.05399 1.18202 1.22468 0.90659 0.88999 1.08857 1.19135 0.92245 0.92928 0.93607 1.20991 1.00921 0.91540 1.04341 1.20142 0.92926 0.96659 1.04524 1.20433 1.01071 0.91846 0.96795 1.21619 1.01746 0.96148 0.98039 1.20420 0.80372 0.86435 0.84305 1.90703 1.54474 1.64468 1.31131 1.43015 1.58475 1.19781 1.08039 1.17257 1.02896 0.86466 1.02540 1.20320 1.01074 0.94468 0.98214 1.21200 1.00529 0.94341 1.00079 1.17742 0.91270 0.92113 0.89172 1.19545 1.00439 0.91862 1.37240 0.90531 1.25888 0.94571 1.01489 0.92642 1.69764 1.11192 1.31684 1.31186 0.86148 0.80168 0.81069 0.78608 1.18561 1.19984 1.19960 1.20808 1.05877 0.95873 1.00047 1.20383 0.95355 0.97241 0.97485 0.88299 0.87937 0.89219 0.75409 0.88956 0.89562 0.88943 0.88466 0.88629 0.89021 0.88858 0.77108 0.89127 0.85052 0.91154 0.88603 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 9.77 36.01 0.35 -0.15 16 2 C 0.19 1.46 6.89 -82.38 -0.57 0.90 16 3 N -0.27 -2.60 11.84 33.70 0.40 -2.20 16 4 N -0.30 -3.29 4.03 -13.40 -0.05 -3.35 16 5 C 0.18 1.74 13.16 -89.95 -1.18 0.55 16 6 N -0.26 -3.32 12.20 29.68 0.36 -2.96 16 7 N -0.25 -3.41 12.32 31.13 0.38 -3.03 16 8 C 0.14 1.70 7.70 -155.98 -1.20 0.50 16 9 C 0.03 0.30 5.90 -104.46 -0.62 -0.32 16 10 C -0.12 -0.95 9.62 36.01 0.35 -0.60 16 11 C -0.13 -1.09 5.13 -104.66 -0.54 -1.63 16 12 C -0.06 -0.51 3.81 -27.88 -0.11 -0.62 16 13 C -0.14 -1.13 5.68 -27.88 -0.16 -1.29 16 14 C 0.50 6.94 7.66 -10.99 -0.08 6.86 16 15 O -0.53 -9.56 13.40 5.56 0.07 -9.49 16 16 N -0.65 -9.82 5.30 -9.74 -0.05 -9.87 16 17 C 0.00 0.01 6.31 -83.57 -0.53 -0.51 16 18 C -0.12 -2.60 9.90 -39.79 -0.39 -2.99 16 19 C -0.14 -3.50 8.62 -39.26 -0.34 -3.84 16 20 C 0.10 2.58 5.55 -106.80 -0.59 1.99 16 21 C -0.46 -11.94 9.02 -37.86 -0.34 -12.29 16 22 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 23 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 24 N -0.81 -20.59 10.60 55.55 0.59 -20.00 16 25 Si 0.92 18.56 29.56 -169.99 -5.03 13.54 16 26 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 27 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 29 C -0.21 -4.98 9.74 -39.26 -0.38 -5.37 16 30 C -0.08 -1.89 8.61 -39.79 -0.34 -2.24 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.41 5.93 -51.93 -0.31 0.11 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.23 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.09 0.65 5.94 -51.93 -0.31 0.34 16 38 H 0.10 0.85 5.89 -51.93 -0.31 0.55 16 39 H 0.10 0.73 5.90 -51.93 -0.31 0.42 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.40 4.52 8.82 -40.82 -0.36 4.16 16 43 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.13 3.38 6.13 -52.48 -0.32 3.06 16 45 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 46 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 47 H 0.11 2.32 6.22 -52.48 -0.33 1.99 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.34 393.02 -9.76 -43.10 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.59 Total: 7.77 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -6.77 Total: -19.43 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 1.63 Total: -41.41 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.34 -9.76 -43.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009721429.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.262 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds