Wall clock time and date at job start Tue Mar 31 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86798 * 119.99690 * 2 1 4 4 H 1.48498 * 109.47078 * 274.72777 * 3 2 1 5 5 H 1.48500 * 109.47146 * 34.73017 * 3 2 1 6 6 H 1.48506 * 109.46832 * 154.73163 * 3 2 1 7 7 C 1.39910 * 119.99999 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 160.83368 * 7 2 1 9 9 C 1.41135 * 119.99973 * 340.83672 * 7 2 1 10 10 C 1.40883 * 120.15826 * 155.93382 * 9 7 2 11 11 C 1.36361 * 119.82656 * 180.02562 * 10 9 7 12 12 C 1.39508 * 120.17160 * 0.02562 * 11 10 9 13 13 N 1.39119 * 119.83922 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00227 * 33.24879 * 13 12 11 15 15 O 1.21569 * 119.99861 * 5.37213 * 14 13 12 16 16 C 1.47793 * 120.00213 * 185.37441 * 14 13 12 17 17 C 1.39596 * 120.14748 * 359.72026 * 16 14 13 18 18 C 1.37957 * 119.84962 * 179.72267 * 17 16 14 19 19 C 1.38366 * 120.14655 * 0.53677 * 18 17 16 20 20 C 1.50693 * 119.84809 * 179.74225 * 19 18 17 21 21 N 1.46901 * 109.47032 * 270.02095 * 20 19 18 22 22 C 1.46851 * 110.99948 * 294.20829 * 21 20 19 23 23 C 1.53034 * 109.52098 * 174.16060 * 22 21 20 24 24 C 1.53119 * 109.27884 * 59.18455 * 23 22 21 25 25 C 1.53121 * 109.15850 * 302.34190 * 24 23 22 26 26 C 1.46850 * 110.99936 * 170.00599 * 21 20 19 27 27 C 1.38358 * 120.29385 * 359.76303 * 19 18 17 28 28 C 1.37950 * 120.15300 * 359.95611 * 27 19 18 29 29 C 1.39516 * 120.32295 * 0.23652 * 12 11 10 30 30 C 1.36359 * 120.16805 * 359.47787 * 29 12 11 31 31 H 0.97001 * 120.00396 * 359.97438 * 1 2 3 32 32 H 1.07999 * 120.08931 * 359.97438 * 10 9 7 33 33 H 1.08006 * 119.91472 * 180.02562 * 11 10 9 34 34 H 0.96999 * 119.99936 * 213.25275 * 13 12 11 35 35 H 1.07999 * 120.07629 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.92470 * 180.27670 * 18 17 16 37 37 H 1.09003 * 109.47554 * 30.02102 * 20 19 18 38 38 H 1.09004 * 109.47077 * 150.02076 * 20 19 18 39 39 H 1.08994 * 109.46451 * 294.18194 * 22 21 20 40 40 H 1.09005 * 109.45654 * 54.14857 * 22 21 20 41 41 H 1.09005 * 109.50813 * 299.24430 * 23 22 21 42 42 H 1.08996 * 109.50244 * 179.12351 * 23 22 21 43 43 H 1.09004 * 109.52356 * 182.44113 * 24 23 22 44 44 H 1.08996 * 109.52254 * 62.24749 * 24 23 22 45 45 H 1.08995 * 109.50806 * 297.71196 * 25 24 23 46 46 H 1.09006 * 109.49904 * 177.59490 * 25 24 23 47 47 H 1.09003 * 109.46069 * 305.85467 * 26 21 20 48 48 H 1.08998 * 109.46677 * 65.82178 * 26 21 20 49 49 H 1.08001 * 119.92221 * 179.97438 * 27 19 18 50 50 H 1.08004 * 120.07406 * 179.97438 * 28 27 19 51 51 H 1.08000 * 119.91411 * 179.72612 * 29 12 11 52 52 H 1.08004 * 120.08676 * 180.23289 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3901 2.1041 -1.3953 5 1 1.4936 2.6217 0.7976 6 1 3.5867 1.4134 0.5977 7 6 2.0083 -1.2117 -0.0005 8 1 3.0434 -1.2374 -0.3076 9 6 1.3612 -2.4002 0.4001 10 6 1.8321 -3.6491 -0.0510 11 6 1.2015 -4.7932 0.3400 12 6 0.0925 -4.7292 1.1840 13 7 -0.5459 -5.9008 1.5781 14 6 0.1678 -7.0300 1.7562 15 8 1.3800 -7.0032 1.6682 16 6 -0.5232 -8.3010 2.0585 17 6 -1.9146 -8.3343 2.1660 18 6 -2.5537 -9.5251 2.4427 19 6 -1.8178 -10.6827 2.6246 20 6 -2.5225 -11.9788 2.9323 21 7 -2.6595 -12.1281 4.3873 22 6 -1.3462 -12.2779 5.0270 23 6 -1.5159 -12.2845 6.5479 24 6 -2.4347 -13.4418 6.9490 25 6 -3.7788 -13.2883 6.2317 26 6 -3.5434 -13.2526 4.7199 27 6 -0.4381 -10.6555 2.5255 28 6 0.2132 -9.4725 2.2436 29 6 -0.3828 -3.4958 1.6303 30 6 0.2410 -2.3436 1.2525 31 1 -0.4851 0.8400 0.0004 32 1 2.6897 -3.7001 -0.7054 33 1 1.5615 -5.7513 -0.0047 34 1 -1.5048 -5.9049 1.7246 35 1 -2.4898 -7.4305 2.0288 36 1 -3.6304 -9.5531 2.5218 37 1 -3.5110 -11.9730 2.4730 38 1 -1.9419 -12.8113 2.5347 39 1 -0.8918 -13.2159 4.7081 40 1 -0.7040 -11.4463 4.7368 41 1 -1.9577 -11.3411 6.8689 42 1 -0.5428 -12.4113 7.0221 43 1 -2.5933 -13.4242 8.0273 44 1 -1.9751 -14.3878 6.6628 45 1 -4.2561 -12.3608 6.5477 46 1 -4.4223 -14.1324 6.4800 47 1 -4.4971 -13.1290 4.2067 48 1 -3.0787 -14.1861 4.4026 49 1 0.1303 -11.5625 2.6690 50 1 1.2903 -9.4526 2.1670 51 1 -1.2445 -3.4537 2.2800 52 1 -0.1257 -1.3897 1.6019 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010335385.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:17 Heat of formation + Delta-G solvation = -9.325023 kcal Electronic energy + Delta-G solvation = -30807.039868 eV Core-core repulsion = 26734.529885 eV Total energy + Delta-G solvation = -4072.509983 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.57307 -40.47488 -39.42242 -38.70468 -36.26324 -35.14812 -34.72751 -32.36771 -32.00165 -31.62736 -31.44998 -30.65824 -27.91992 -26.65944 -24.67621 -24.06886 -23.53112 -23.46420 -22.81806 -22.18702 -21.05138 -20.56363 -19.37789 -19.07155 -17.98447 -17.13894 -17.04747 -16.68126 -16.44407 -16.19149 -15.96484 -15.71888 -15.50292 -15.30793 -15.04267 -14.93041 -14.63184 -14.45970 -14.37209 -14.23385 -14.06598 -14.00711 -13.68283 -13.47980 -13.25520 -13.01116 -12.84896 -12.78220 -12.72895 -12.44156 -12.37876 -12.09542 -11.95714 -11.90352 -11.58749 -11.57300 -11.27197 -11.26894 -11.21837 -10.91306 -10.52432 -9.94405 -9.85602 -9.50630 -9.23371 -8.88927 -8.66012 -6.27473 -0.22511 0.41476 0.83569 1.11922 1.39265 1.45679 1.54794 1.89594 2.21426 2.27942 2.66951 2.80437 3.17102 3.61849 3.71839 3.78294 3.86843 3.92753 4.00576 4.02238 4.08875 4.25889 4.35149 4.36725 4.39818 4.46012 4.49782 4.61670 4.64777 4.65811 4.72580 4.85363 4.86394 4.89480 4.97260 5.03428 5.07243 5.09146 5.10016 5.12202 5.25330 5.27119 5.30752 5.32746 5.39172 5.41178 5.49049 5.55654 5.63511 5.85975 5.90439 6.00621 6.07486 6.11707 6.18786 6.33789 6.61764 6.68221 6.90393 6.96052 7.31801 8.30016 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.025874 B = 0.001490 C = 0.001476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.927208 B =18784.398667 C =18960.836754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.076 3.924 10 C -0.236 4.236 11 C -0.086 4.086 12 C 0.001 3.999 13 N -0.636 5.636 14 C 0.539 3.461 15 O -0.576 6.576 16 C -0.145 4.145 17 C -0.085 4.085 18 C -0.102 4.102 19 C -0.051 4.051 20 C 0.094 3.906 21 N -0.542 5.542 22 C 0.050 3.950 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.115 4.115 26 C 0.055 3.945 27 C -0.118 4.118 28 C -0.075 4.075 29 C -0.109 4.109 30 C -0.173 4.173 31 H 0.291 0.709 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.414 0.586 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.102 0.898 38 H 0.052 0.948 39 H 0.036 0.964 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.036 0.964 49 H 0.142 0.858 50 H 0.120 0.880 51 H 0.125 0.875 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.401 -25.817 10.457 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.256 4.256 11 C -0.106 4.106 12 C -0.092 4.092 13 N -0.280 5.280 14 C 0.329 3.671 15 O -0.457 6.457 16 C -0.148 4.148 17 C -0.104 4.104 18 C -0.120 4.120 19 C -0.052 4.052 20 C -0.033 4.033 21 N -0.267 5.267 22 C -0.078 4.078 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.072 4.072 27 C -0.136 4.136 28 C -0.094 4.094 29 C -0.129 4.129 30 C -0.192 4.192 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.252 0.748 35 H 0.161 0.839 36 H 0.173 0.827 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.054 0.946 49 H 0.160 0.840 50 H 0.138 0.862 51 H 0.143 0.857 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.023 -25.260 10.556 29.901 hybrid contribution 0.791 0.338 -0.527 1.009 sum -11.232 -24.922 10.029 29.118 Atomic orbital electron populations 1.69869 1.08894 1.30852 1.34607 1.26745 0.95530 1.04388 0.91047 0.85199 0.79166 0.75918 0.79478 1.18630 1.18584 1.18602 1.19784 0.98892 0.92750 1.41033 0.90819 1.17994 0.92118 0.92697 0.89812 1.20767 1.04562 0.92868 1.07367 1.20363 0.96294 0.97107 0.96825 1.17203 1.00680 0.85444 1.05867 1.42784 1.11393 1.07619 1.66227 1.18943 0.86794 0.84683 0.76679 1.90731 1.15609 1.86505 1.52884 1.19833 0.95010 0.92439 1.07549 1.21532 0.92046 0.99938 0.96852 1.21212 1.01378 0.90826 0.98576 1.20157 0.93135 0.96052 0.95854 1.21103 1.01137 0.92704 0.88362 1.61922 1.12855 1.43669 1.08229 1.22185 0.90382 1.00172 0.95079 1.21579 1.00092 0.99285 0.94636 1.21582 0.95800 0.97979 1.00450 1.21582 0.97288 1.02430 0.94024 1.22153 0.97020 0.91025 0.97003 1.21147 0.94460 0.97518 1.00519 1.21249 1.00278 0.91757 0.96158 1.20479 1.00754 0.91097 1.00544 1.20888 0.99699 0.97141 1.01515 0.89794 0.88754 0.88216 0.74759 0.83872 0.82740 0.87936 0.92950 0.94563 0.91285 0.92288 0.91239 0.91390 0.92011 0.91885 0.90225 0.89654 0.94594 0.83996 0.86174 0.85741 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.10 11.00 21.82 0.24 -41.86 16 2 C 0.04 1.96 5.11 85.24 0.44 2.40 16 3 Si 0.98 38.24 29.60 68.60 2.03 40.27 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.50 -27.49 9.03 23.39 0.21 -27.28 16 8 H 0.07 3.99 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.31 5.58 -21.28 -0.12 4.19 16 10 C -0.24 -12.76 9.74 22.48 0.22 -12.54 16 11 C -0.09 -4.37 8.57 22.14 0.19 -4.18 16 12 C 0.00 0.07 6.29 38.60 0.24 0.31 16 13 N -0.64 -23.17 5.25 -305.75 -1.61 -24.77 16 14 C 0.54 20.21 7.50 86.77 0.65 20.86 16 15 O -0.58 -26.69 13.99 -3.93 -0.06 -26.74 16 16 C -0.14 -4.08 5.87 -20.09 -0.12 -4.20 16 17 C -0.09 -1.77 9.54 22.53 0.21 -1.55 16 18 C -0.10 -1.66 9.68 22.23 0.22 -1.45 16 19 C -0.05 -0.82 4.89 -19.81 -0.10 -0.92 16 20 C 0.09 1.08 5.11 85.55 0.44 1.52 16 21 N -0.54 -6.91 4.65 -900.92 -4.19 -11.10 16 22 C 0.05 0.68 5.15 86.32 0.44 1.12 16 23 C -0.12 -1.52 6.09 30.65 0.19 -1.33 16 24 C -0.12 -1.21 6.00 30.67 0.18 -1.03 16 25 C -0.12 -1.07 6.09 30.65 0.19 -0.89 16 26 C 0.06 0.53 5.46 86.32 0.47 1.00 16 27 C -0.12 -2.21 7.85 22.23 0.17 -2.04 16 28 C -0.08 -1.94 9.60 22.53 0.22 -1.72 16 29 C -0.11 -5.04 9.89 22.14 0.22 -4.82 16 30 C -0.17 -9.14 8.65 22.48 0.19 -8.95 16 31 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 32 H 0.09 4.92 8.06 -2.91 -0.02 4.90 16 33 H 0.10 5.06 6.38 -2.91 -0.02 5.04 16 34 H 0.41 11.52 6.86 -92.71 -0.64 10.89 16 35 H 0.14 2.40 6.42 -2.91 -0.02 2.38 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 37 H 0.10 0.87 7.93 -2.39 -0.02 0.86 16 38 H 0.05 0.54 8.06 -2.39 -0.02 0.52 16 39 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.07 1.13 5.74 -2.38 -0.01 1.11 16 41 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.09 0.65 8.02 -2.39 -0.02 0.63 16 48 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.14 2.06 7.95 -2.91 -0.02 2.03 16 50 H 0.12 3.38 7.65 -2.91 -0.02 3.36 16 51 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 52 H 0.11 6.04 6.17 -2.91 -0.02 6.02 16 Total: -1.00 -68.97 414.20 1.48 -67.49 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.30 Total: 38.23 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.76 Total: -41.50 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -5.55 Total: -77.74 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.74 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -68.97 1.48 -67.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010335385.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.163 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds