Wall clock time and date at job start Tue Mar 31 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48497 * 109.46982 * 239.99550 * 3 2 1 5 5 H 1.48501 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46854 * 119.99876 * 3 2 1 7 7 C 1.38629 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00220 * 174.96201 * 9 7 2 11 11 C 1.38911 * 119.99299 * 5.34388 * 10 9 7 12 12 C 1.37997 * 120.00364 * 180.02562 * 11 10 9 13 13 C 1.38940 * 119.99420 * 359.97438 * 12 11 10 14 14 N 1.39920 * 120.00273 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99843 * 144.90808 * 14 13 12 16 16 O 1.21619 * 120.00107 * 4.25359 * 15 14 13 17 17 C 1.47458 * 119.99618 * 184.25637 * 15 14 13 18 18 C 1.39844 * 120.06541 * 359.72506 * 17 15 14 19 19 C 1.37091 * 119.92756 * 179.72001 * 18 17 15 20 20 C 1.39297 * 120.06918 * 0.55236 * 19 18 17 21 21 S 1.76205 * 119.93599 * 179.69599 * 20 19 18 22 22 C 1.81401 * 102.99939 * 0.02655 * 21 20 19 23 23 F 1.39897 * 109.47183 * 299.99812 * 22 21 20 24 24 F 1.39905 * 109.47214 * 59.99700 * 22 21 20 25 25 C 1.39301 * 120.13089 * 359.72568 * 20 19 18 26 26 C 1.37085 * 120.06581 * 359.97438 * 25 20 19 27 27 C 1.38939 * 119.99547 * 0.26996 * 13 12 11 28 28 C 1.38000 * 119.99361 * 359.49534 * 27 13 12 29 29 H 0.97000 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00203 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.00066 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99893 * 324.62855 * 14 13 12 33 33 H 1.07999 * 120.03456 * 359.97438 * 18 17 15 34 34 H 1.08005 * 119.96152 * 180.28108 * 19 18 17 35 35 H 1.09000 * 109.47257 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.97108 * 179.97438 * 25 20 19 37 37 H 1.08005 * 120.03636 * 179.97438 * 26 25 20 38 38 H 1.07993 * 120.00310 * 179.70024 * 27 13 12 39 39 H 1.08000 * 120.00016 * 180.22947 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6964 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5045 -0.1052 11 6 3.4577 -3.4373 -0.0951 12 6 4.2054 -4.5921 -0.2031 13 6 3.5703 -5.8222 -0.3213 14 7 4.3282 -6.9932 -0.4313 15 6 3.8892 -8.1355 0.1333 16 8 2.7990 -8.1681 0.6714 17 6 4.7308 -9.3459 0.0986 18 6 5.9821 -9.3114 -0.5248 19 6 6.7647 -10.4368 -0.5503 20 6 6.3096 -11.6167 0.0336 21 16 7.3149 -13.0632 -0.0083 22 6 8.7951 -12.5058 -0.8966 23 9 8.4338 -12.0649 -2.1742 24 9 9.3935 -11.4553 -0.1927 25 6 5.0611 -11.6556 0.6502 26 6 4.2767 -10.5319 0.6843 27 6 2.1826 -5.8888 -0.3364 28 6 1.4352 -4.7343 -0.2236 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4811 -0.0028 31 1 5.2841 -4.5397 -0.1957 32 1 5.1676 -6.9838 -0.9173 33 1 6.3334 -8.3982 -0.9819 34 1 7.7331 -10.4096 -1.0276 35 1 9.4999 -13.3328 -0.9831 36 1 4.7107 -12.5720 1.1018 37 1 3.3086 -10.5627 1.1621 38 1 1.6889 -6.8444 -0.4331 39 1 0.3565 -4.7863 -0.2316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010999211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:35 Heat of formation + Delta-G solvation = -86.247745 kcal Electronic energy + Delta-G solvation = -27945.894689 eV Core-core repulsion = 23389.187576 eV Total energy + Delta-G solvation = -4556.707113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.068 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.96501 -47.95253 -40.62128 -39.20882 -38.37105 -36.47610 -34.17102 -32.28377 -31.70527 -31.60794 -30.23669 -27.95529 -27.68603 -25.47270 -24.48645 -23.20181 -22.30709 -21.52714 -20.32507 -19.42561 -18.69687 -18.24393 -18.14437 -17.86541 -17.31325 -17.05456 -16.37003 -15.53791 -15.14401 -15.10934 -14.84267 -14.72311 -14.57891 -14.31000 -14.27176 -14.13983 -13.87835 -13.66017 -13.53552 -13.34893 -13.23661 -12.81263 -12.52938 -12.01205 -11.86622 -11.64752 -11.57931 -11.53958 -11.08721 -11.03570 -10.78279 -10.49995 -10.47673 -9.87440 -9.60940 -9.57927 -9.29088 -8.73682 -8.35087 -8.22664 -6.96206 -6.45531 -4.03676 0.06012 0.22123 0.88812 1.13362 2.09126 2.19431 2.67460 3.04803 3.12350 3.13167 3.16533 3.17634 3.51163 3.61709 3.69107 3.95982 4.22089 4.33139 4.48777 4.61217 4.78730 4.91878 5.07462 5.09071 5.30871 5.43691 5.53137 5.63311 5.69513 5.77419 5.88967 6.10357 6.18612 6.23747 6.29003 6.78965 6.82079 6.95245 7.12979 7.20168 7.38823 7.63439 7.75305 7.98618 8.25878 8.99460 9.69479 10.72161 Molecular weight = 365.07amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.001607 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.890373 B =17415.930409 C =18297.049233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.220 4.220 12 C -0.087 4.087 13 C 0.030 3.970 14 N -0.652 5.652 15 C 0.548 3.452 16 O -0.520 6.520 17 C -0.120 4.120 18 C -0.067 4.067 19 C -0.128 4.128 20 C -0.076 4.076 21 S -0.089 6.089 22 C 0.270 3.730 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.097 4.097 26 C -0.042 4.042 27 C -0.065 4.065 28 C -0.179 4.179 29 H 0.271 0.729 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.401 0.599 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.129 0.871 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.966 -26.397 -2.333 32.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.240 4.240 12 C -0.107 4.107 13 C -0.062 4.062 14 N -0.297 5.297 15 C 0.336 3.664 16 O -0.397 6.397 17 C -0.126 4.126 18 C -0.087 4.087 19 C -0.151 4.151 20 C -0.189 4.189 21 S 0.149 5.851 22 C 0.107 3.893 23 F -0.160 7.160 24 F -0.160 7.160 25 C -0.120 4.120 26 C -0.063 4.063 27 C -0.085 4.085 28 C -0.199 4.199 29 H 0.081 0.919 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.236 0.764 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.680 -27.320 -1.531 32.578 hybrid contribution 1.356 2.174 -0.773 2.676 sum 19.036 -25.146 -2.303 31.623 Atomic orbital electron populations 1.70041 1.05949 1.27813 1.45754 1.25297 0.95856 0.98850 0.96539 0.85778 0.78696 0.79773 0.79154 1.19512 1.20273 1.19503 1.21270 0.91763 0.80856 1.52975 0.89094 1.83990 1.34248 1.11394 1.78171 1.19430 0.90239 0.88126 0.92763 1.20969 0.93677 0.98425 1.10948 1.20481 0.98435 0.91073 1.00736 1.17226 0.90723 0.84529 1.13694 1.43088 1.24689 1.08219 1.53660 1.18122 0.86377 0.83014 0.78862 1.90803 1.20782 1.84108 1.44030 1.20142 0.95405 0.94816 1.02195 1.21101 0.92802 0.98234 0.96586 1.21163 1.00901 0.92093 1.00986 1.21776 0.98294 0.95857 1.02998 1.86381 1.13331 1.14925 1.70450 1.24348 0.96296 0.90514 0.78095 1.93133 1.92231 1.91012 1.39642 1.93136 1.84442 1.60360 1.78078 1.20601 0.92101 0.99415 0.99857 1.21129 0.99761 0.90285 0.95116 1.20742 0.91779 0.97957 0.98005 1.20154 0.99782 0.89786 1.10189 0.91933 0.85049 0.87132 0.76378 0.84789 0.84961 0.82420 0.84407 0.83445 0.85285 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.89 9.48 30.88 0.29 -10.59 16 8 H 0.09 2.31 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -5.00 9.75 0.01 0.00 -5.00 16 10 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 11 C -0.22 -4.71 9.16 -39.42 -0.36 -5.07 16 12 C -0.09 -1.56 9.96 -39.41 -0.39 -1.95 16 13 C 0.03 0.54 6.29 -83.65 -0.53 0.02 16 14 N -0.65 -9.06 5.28 -10.78 -0.06 -9.11 16 15 C 0.55 7.97 7.60 -12.51 -0.10 7.87 16 16 O -0.52 -9.40 13.79 5.26 0.07 -9.32 16 17 C -0.12 -1.35 5.88 -104.94 -0.62 -1.97 16 18 C -0.07 -0.61 9.50 -39.40 -0.37 -0.98 16 19 C -0.13 -1.12 8.64 -39.60 -0.34 -1.46 16 20 C -0.08 -0.65 6.12 -38.79 -0.24 -0.89 16 21 S -0.09 -0.56 22.16 -107.50 -2.38 -2.94 16 22 C 0.27 1.27 5.37 101.05 0.54 1.81 16 23 F -0.18 -1.16 15.63 2.25 0.04 -1.13 16 24 F -0.18 -1.17 15.64 2.25 0.04 -1.14 16 25 C -0.10 -0.82 9.75 -39.60 -0.39 -1.21 16 26 C -0.04 -0.43 9.56 -39.40 -0.38 -0.81 16 27 C -0.06 -1.29 8.68 -39.41 -0.34 -1.63 16 28 C -0.18 -3.95 9.98 -39.42 -0.39 -4.35 16 29 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.76 5.63 -52.48 -0.30 2.47 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.40 4.08 6.85 -40.82 -0.28 3.80 16 33 H 0.13 0.91 6.40 -52.49 -0.34 0.57 16 34 H 0.13 1.04 4.53 -52.48 -0.24 0.81 16 35 H 0.16 0.10 8.14 -51.92 -0.42 -0.32 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.15 1.48 7.64 -52.48 -0.40 1.07 16 38 H 0.13 2.49 6.25 -52.49 -0.33 2.16 16 39 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -33.77 358.06 -8.11 -41.88 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -2.98 Total: 7.36 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.97 Total: -16.88 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.70 Total: -33.56 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.07 Total: -14.32 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.07 Total: -2.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.38 Total: -2.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.77 -8.11 -41.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010999211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.370 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds