Wall clock time and date at job start Tue Mar 31 2020 06:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31580 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48497 * 109.46982 * 239.99550 * 3 2 1 5 5 H 1.48501 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46854 * 119.99876 * 3 2 1 7 7 C 1.38629 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99878 * 180.02562 * 7 2 1 9 9 O 1.34812 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00220 * 174.96201 * 9 7 2 11 11 C 1.38911 * 119.99299 * 5.34388 * 10 9 7 12 12 C 1.37997 * 120.00364 * 180.02562 * 11 10 9 13 13 C 1.38940 * 119.99420 * 359.97438 * 12 11 10 14 14 N 1.39920 * 120.00273 * 179.97438 * 13 12 11 15 15 C 1.34770 * 119.99843 * 144.90808 * 14 13 12 16 16 O 1.21619 * 120.00107 * 4.25359 * 15 14 13 17 17 C 1.47458 * 119.99618 * 184.25637 * 15 14 13 18 18 C 1.39844 * 120.06541 * 359.72506 * 17 15 14 19 19 C 1.37091 * 119.92756 * 179.72001 * 18 17 15 20 20 C 1.39297 * 120.06918 * 0.55236 * 19 18 17 21 21 S 1.76205 * 119.93599 * 179.69599 * 20 19 18 22 22 C 1.81401 * 102.99939 * 0.02655 * 21 20 19 23 23 F 1.39897 * 109.47183 * 299.99812 * 22 21 20 24 24 F 1.39905 * 109.47214 * 59.99700 * 22 21 20 25 25 C 1.39301 * 120.13089 * 359.72568 * 20 19 18 26 26 C 1.37085 * 120.06581 * 359.97438 * 25 20 19 27 27 C 1.38939 * 119.99547 * 0.26996 * 13 12 11 28 28 C 1.38000 * 119.99361 * 359.49534 * 27 13 12 29 29 H 0.97000 * 119.99663 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00203 * 0.02562 * 11 10 9 31 31 H 1.08000 * 120.00066 * 179.97438 * 12 11 10 32 32 H 0.97001 * 119.99893 * 324.62855 * 14 13 12 33 33 H 1.07999 * 120.03456 * 359.97438 * 18 17 15 34 34 H 1.08005 * 119.96152 * 180.28108 * 19 18 17 35 35 H 1.09000 * 109.47257 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.97108 * 179.97438 * 25 20 19 37 37 H 1.08005 * 120.03636 * 179.97438 * 26 25 20 38 38 H 1.07993 * 120.00310 * 179.70024 * 27 13 12 39 39 H 1.08000 * 120.00016 * 180.22947 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6964 -1.2124 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6964 1.2126 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0703 -3.5045 -0.1052 11 6 3.4577 -3.4373 -0.0951 12 6 4.2054 -4.5921 -0.2031 13 6 3.5703 -5.8222 -0.3213 14 7 4.3282 -6.9932 -0.4313 15 6 3.8892 -8.1355 0.1333 16 8 2.7990 -8.1681 0.6714 17 6 4.7308 -9.3459 0.0986 18 6 5.9821 -9.3114 -0.5248 19 6 6.7647 -10.4368 -0.5503 20 6 6.3096 -11.6167 0.0336 21 16 7.3149 -13.0632 -0.0083 22 6 8.7951 -12.5058 -0.8966 23 9 8.4338 -12.0649 -2.1742 24 9 9.3935 -11.4553 -0.1927 25 6 5.0611 -11.6556 0.6502 26 6 4.2767 -10.5319 0.6843 27 6 2.1826 -5.8888 -0.3364 28 6 1.4352 -4.7343 -0.2236 29 1 -0.4850 0.8401 -0.0004 30 1 3.9514 -2.4811 -0.0028 31 1 5.2841 -4.5397 -0.1957 32 1 5.1676 -6.9838 -0.9173 33 1 6.3334 -8.3982 -0.9819 34 1 7.7331 -10.4096 -1.0276 35 1 9.4999 -13.3328 -0.9831 36 1 4.7107 -12.5720 1.1018 37 1 3.3086 -10.5627 1.1621 38 1 1.6889 -6.8444 -0.4331 39 1 0.3565 -4.7863 -0.2316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010999211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:34 Heat of formation + Delta-G solvation = -106.627358 kcal Electronic energy + Delta-G solvation = -27946.778415 eV Core-core repulsion = 23389.187576 eV Total energy + Delta-G solvation = -4557.590839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.068 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.38189 -48.38017 -41.79223 -40.63408 -39.59993 -38.09149 -35.58397 -34.19421 -32.60820 -32.34796 -31.89084 -29.49031 -28.04934 -27.37119 -25.52144 -23.98464 -23.90057 -22.90531 -21.63060 -20.01751 -19.91430 -19.28275 -18.96409 -18.76352 -18.55538 -18.01278 -17.61424 -16.51024 -16.45865 -16.35851 -15.98199 -15.89371 -15.50515 -15.34779 -15.29687 -15.17826 -14.79507 -14.70677 -14.64104 -14.50500 -14.28216 -14.04424 -13.87339 -13.60292 -13.29670 -13.22080 -12.68685 -12.55757 -12.50224 -12.27155 -12.15130 -11.54759 -11.33858 -11.23365 -11.19043 -10.92210 -10.57681 -10.27139 -9.86704 -8.95079 -8.62921 -8.45083 -6.12815 -0.57932 -0.35388 0.20093 0.50634 0.55244 0.57118 1.37248 1.47162 1.53839 1.63365 1.99685 2.19630 2.60187 2.76222 2.82963 3.15086 3.31381 3.38878 3.49538 3.52239 3.60171 3.70163 4.04117 4.08890 4.11908 4.21621 4.39516 4.47876 4.58572 4.70716 4.78271 4.94228 4.98159 5.04933 5.17107 5.17373 5.27123 5.44993 5.52482 5.56034 5.66052 6.02356 6.12892 6.42716 6.98624 7.08840 7.78838 8.77735 Molecular weight = 365.07amu Principal moments of inertia in cm(-1) A = 0.023908 B = 0.001607 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.890373 B =17415.930409 C =18297.049233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.107 0.893 9 O -0.230 6.230 10 C 0.110 3.890 11 C -0.221 4.221 12 C -0.076 4.076 13 C 0.058 3.942 14 N -0.642 5.642 15 C 0.552 3.448 16 O -0.561 6.561 17 C -0.141 4.141 18 C -0.058 4.058 19 C -0.136 4.136 20 C -0.080 4.080 21 S -0.080 6.080 22 C 0.268 3.732 23 F -0.188 7.188 24 F -0.188 7.188 25 C -0.099 4.099 26 C -0.048 4.048 27 C -0.071 4.071 28 C -0.191 4.191 29 H 0.272 0.728 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.423 0.577 33 H 0.159 0.841 34 H 0.143 0.857 35 H 0.205 0.795 36 H 0.157 0.843 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.497 -28.485 -2.889 37.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.137 6.137 10 C 0.059 3.941 11 C -0.240 4.240 12 C -0.096 4.096 13 C -0.036 4.036 14 N -0.289 5.289 15 C 0.342 3.658 16 O -0.441 6.441 17 C -0.146 4.146 18 C -0.078 4.078 19 C -0.159 4.159 20 C -0.193 4.193 21 S 0.159 5.841 22 C 0.106 3.894 23 F -0.170 7.170 24 F -0.170 7.170 25 C -0.122 4.122 26 C -0.069 4.069 27 C -0.091 4.091 28 C -0.211 4.211 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.178 0.822 32 H 0.263 0.737 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.221 0.779 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.288 -29.492 -2.106 37.026 hybrid contribution 0.144 2.312 -0.618 2.397 sum 22.431 -27.181 -2.725 35.346 Atomic orbital electron populations 1.70205 1.08134 1.28854 1.48759 1.26646 0.96857 1.02896 0.95855 0.84618 0.77329 0.74053 0.80024 1.17907 1.19951 1.18068 1.21841 0.92720 0.81258 1.53141 0.87539 1.83960 1.35957 1.12555 1.81180 1.19883 0.91816 0.87679 0.94709 1.21136 0.92556 0.99973 1.10356 1.20849 1.00627 0.89473 0.98626 1.17354 0.90286 0.86173 1.09740 1.42993 1.25136 1.06796 1.53971 1.18636 0.85999 0.83678 0.77505 1.90791 1.22772 1.84772 1.45735 1.19869 0.96209 0.93580 1.04987 1.21305 0.91621 0.99401 0.95457 1.21340 1.01317 0.92051 1.01195 1.22118 0.98556 0.96980 1.01627 1.86382 1.13719 1.13508 1.70463 1.24860 0.96142 0.91340 0.77056 1.93114 1.92354 1.91219 1.40301 1.93116 1.84463 1.61102 1.78324 1.20780 0.92046 0.99555 0.99833 1.21188 0.99884 0.90743 0.95067 1.20854 0.93027 0.97124 0.98135 1.20268 0.99869 0.90202 1.10711 0.91894 0.84814 0.82245 0.73714 0.82400 0.83929 0.77873 0.82516 0.84121 0.84892 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.93 13.67 21.61 0.30 -56.63 16 2 C -0.03 -1.43 5.49 84.82 0.47 -0.96 16 3 Si 1.02 42.42 29.55 68.60 2.03 44.44 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -23.89 9.48 67.91 0.64 -23.24 16 8 H 0.11 5.50 5.20 -2.91 -0.02 5.49 16 9 O -0.23 -13.97 9.75 -22.88 -0.22 -14.20 16 10 C 0.11 5.57 6.65 22.59 0.15 5.72 16 11 C -0.22 -9.33 9.16 22.37 0.20 -9.12 16 12 C -0.08 -2.50 9.96 22.38 0.22 -2.28 16 13 C 0.06 1.94 6.29 38.19 0.24 2.18 16 14 N -0.64 -16.00 5.28 -306.28 -1.62 -17.62 16 15 C 0.55 15.16 7.60 86.67 0.66 15.82 16 16 O -0.56 -20.13 13.79 -4.09 -0.06 -20.18 16 17 C -0.14 -2.91 5.88 -20.07 -0.12 -3.02 16 18 C -0.06 -0.87 9.50 22.39 0.21 -0.66 16 19 C -0.14 -1.97 8.64 22.25 0.19 -1.77 16 20 C -0.08 -1.15 6.12 22.78 0.14 -1.01 16 21 S -0.08 -0.75 22.16 -56.49 -1.25 -2.00 16 22 C 0.27 1.54 5.37 113.37 0.61 2.15 16 23 F -0.19 -1.84 15.63 44.97 0.70 -1.14 16 24 F -0.19 -1.86 15.64 44.97 0.70 -1.15 16 25 C -0.10 -1.49 9.75 22.25 0.22 -1.27 16 26 C -0.05 -0.92 9.56 22.39 0.21 -0.71 16 27 C -0.07 -2.84 8.68 22.38 0.19 -2.64 16 28 C -0.19 -8.80 9.98 22.37 0.22 -8.58 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.13 5.54 5.63 -2.91 -0.02 5.52 16 31 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.42 6.83 6.85 -92.71 -0.63 6.20 16 33 H 0.16 1.48 6.40 -2.91 -0.02 1.46 16 34 H 0.14 1.77 4.53 -2.91 -0.01 1.76 16 35 H 0.20 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.14 2.81 7.64 -2.91 -0.02 2.79 16 38 H 0.13 5.19 6.25 -2.91 -0.02 5.17 16 39 H 0.11 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -79.31 358.06 5.57 -73.73 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.52 Total: 24.15 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.47 Total: -29.40 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -1.32 Total: -74.25 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.28 Total: -34.38 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 1.41 Total: -2.29 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.25 Total: -2.00 kcal Total: -79.31 5.57 -73.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010999211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.893 kcal (2) G-P(sol) polarization free energy of solvation -79.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds