Wall clock time and date at job start Tue Mar 31 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47077 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47307 * 300.00089 * 3 2 1 6 6 H 1.48503 * 109.47023 * 60.00191 * 3 2 1 7 7 C 1.37874 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99837 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99861 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99883 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00133 * 179.97438 * 11 10 9 14 14 S 1.81400 * 109.47258 * 179.97438 * 13 11 10 15 15 C 1.76204 * 102.99765 * 180.02562 * 14 13 11 16 16 N 1.31089 * 126.00809 * 359.68800 * 15 14 13 17 17 N 1.40101 * 107.98239 * 179.91215 * 16 15 14 18 18 C 1.31025 * 108.01547 * 0.35878 * 17 16 15 19 19 N 1.38890 * 125.99316 * 179.76338 * 18 17 16 20 20 C 1.46848 * 111.00019 * 124.23909 * 19 18 17 21 21 C 1.53039 * 109.52823 * 174.15921 * 20 19 18 22 22 C 1.53128 * 109.27356 * 59.17831 * 21 20 19 23 23 C 1.53115 * 109.16171 * 302.34837 * 22 21 20 24 24 C 1.46846 * 111.00045 * 0.02905 * 19 18 17 25 25 N 1.36613 * 108.01714 * 359.78680 * 18 17 16 26 26 C 1.46491 * 126.00214 * 179.97438 * 25 18 17 27 27 C 1.53001 * 117.50506 * 197.77938 * 26 25 18 28 28 C 1.52999 * 117.49956 * 129.15476 * 26 25 18 29 29 H 0.97000 * 120.00036 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47417 * 60.00104 * 9 7 2 31 31 H 1.08995 * 109.47188 * 299.99698 * 9 7 2 32 32 H 0.96994 * 120.00107 * 359.97438 * 10 9 7 33 33 H 1.08995 * 109.46956 * 299.99792 * 13 11 10 34 34 H 1.09009 * 109.46685 * 59.99440 * 13 11 10 35 35 H 1.09006 * 109.46363 * 294.17917 * 20 19 18 36 36 H 1.09003 * 109.46555 * 54.14011 * 20 19 18 37 37 H 1.08996 * 109.50005 * 299.24157 * 21 20 19 38 38 H 1.08995 * 109.54142 * 179.13789 * 21 20 19 39 39 H 1.08997 * 109.52020 * 182.44598 * 22 21 20 40 40 H 1.09001 * 109.57232 * 62.28409 * 22 21 20 41 41 H 1.09007 * 109.50532 * 297.71647 * 23 22 21 42 42 H 1.08998 * 109.53686 * 177.61757 * 23 22 21 43 43 H 1.08997 * 109.46266 * 305.84850 * 24 19 18 44 44 H 1.09004 * 109.46266 * 65.83515 * 24 19 18 45 45 H 1.09003 * 115.55141 * 343.49151 * 26 25 18 46 46 H 1.08999 * 117.49411 * 359.97438 * 27 26 25 47 47 H 1.08994 * 117.50401 * 145.01941 * 27 26 25 48 48 H 1.09006 * 117.50183 * 214.98127 * 28 26 25 49 49 H 1.09000 * 117.50098 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5614 -5.1049 0.0006 13 6 2.7331 -6.0288 0.0022 14 16 1.8261 -7.5997 0.0023 15 6 3.1148 -8.8014 0.0039 16 7 4.4016 -8.5514 -0.0011 17 7 5.0804 -9.7770 0.0045 18 6 4.1867 -10.7352 0.0048 19 7 4.4517 -12.0986 0.0050 20 6 3.7952 -12.7621 1.1386 21 6 3.9868 -14.2763 1.0259 22 6 5.4841 -14.5972 1.0199 23 6 6.1523 -13.8555 -0.1411 24 6 5.8978 -12.3536 0.0054 25 7 2.9484 -10.1580 0.0045 26 6 1.6673 -10.8684 0.0042 27 6 0.4228 -10.0809 -0.4106 28 6 0.6336 -10.4615 1.0562 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 3.1567 -3.4354 0.0021 33 1 3.3603 -5.9711 -0.8874 34 1 3.3592 -5.9709 0.8926 35 1 4.2355 -12.4087 2.0710 36 1 2.7304 -12.5291 1.1289 37 1 3.5346 -14.6324 0.1003 38 1 3.5127 -14.7680 1.8753 39 1 5.6260 -15.6708 0.8961 40 1 5.9300 -14.2769 1.9615 41 1 5.7341 -14.2051 -1.0851 42 1 7.2255 -14.0460 -0.1258 43 1 6.3602 -11.8240 -0.8275 44 1 6.3283 -12.0023 0.9432 45 1 1.7134 -11.9210 -0.2752 46 1 0.5573 -9.0341 -0.6828 47 1 -0.3500 -10.6152 -0.9632 48 1 -0.0005 -11.2464 1.4687 49 1 0.9070 -9.6656 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011379755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:52 Heat of formation + Delta-G solvation = 80.534741 kcal Electronic energy + Delta-G solvation = -29972.728516 eV Core-core repulsion = 25870.592841 eV Total energy + Delta-G solvation = -4102.135675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.163 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.35007 -39.37455 -38.86964 -37.76196 -34.32427 -34.27457 -32.44064 -32.39745 -31.35773 -30.34047 -29.66217 -26.84291 -25.24216 -24.50786 -23.34576 -22.95469 -22.69041 -22.00234 -21.23412 -20.21951 -19.86502 -18.24967 -17.50986 -16.78497 -16.55013 -16.22087 -15.87290 -15.44232 -15.37630 -15.18563 -15.09332 -15.04994 -14.48172 -14.34052 -14.05288 -13.93587 -13.83500 -13.56135 -12.99148 -12.77325 -12.74106 -12.24126 -12.01499 -11.94460 -11.83683 -11.68918 -11.56996 -11.46455 -11.29502 -11.15308 -11.01792 -10.97838 -10.93064 -10.85893 -10.71286 -10.36438 -10.21170 -9.75665 -9.43360 -9.34524 -9.08364 -8.79493 -8.02494 -7.71196 -6.20067 -4.27183 0.74825 1.51650 1.98458 2.01965 2.21152 3.08787 3.13446 3.22696 3.28868 3.30067 3.33259 3.93022 3.96990 4.13608 4.25465 4.26890 4.33414 4.34859 4.37610 4.50131 4.71939 4.77106 4.84026 4.97961 5.04645 5.08298 5.15257 5.17466 5.19892 5.24305 5.27145 5.32924 5.36067 5.39873 5.47675 5.53472 5.56203 5.63526 5.68217 5.77507 5.80029 6.01710 6.20927 6.84657 7.20798 7.28021 7.44649 7.59975 7.84071 7.91318 8.47268 8.68031 8.93063 9.39315 10.90080 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.022848 B = 0.001756 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.214477 B =15944.917624 C =16947.595088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.701 5.701 11 C 0.519 3.481 12 O -0.545 6.545 13 C -0.164 4.164 14 S 0.091 5.909 15 C 0.191 3.809 16 N -0.311 5.311 17 N -0.344 5.344 18 C 0.407 3.593 19 N -0.450 5.450 20 C 0.047 3.953 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.070 3.930 25 N -0.458 5.458 26 C 0.044 3.956 27 C -0.173 4.173 28 C -0.176 4.176 29 H 0.266 0.734 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.395 0.605 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.151 0.849 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.114 0.886 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.827 -32.712 1.876 33.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.129 3.871 10 N -0.349 5.349 11 C 0.302 3.698 12 O -0.424 6.424 13 C -0.315 4.315 14 S 0.318 5.682 15 C -0.189 4.189 16 N -0.145 5.145 17 N -0.180 5.180 18 C 0.044 3.956 19 N -0.175 5.175 20 C -0.080 4.080 21 C -0.153 4.153 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.057 4.057 25 N -0.159 5.159 26 C -0.061 4.061 27 C -0.212 4.212 28 C -0.215 4.215 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.228 0.772 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.169 0.831 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.132 0.868 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.021 -32.241 1.452 32.830 hybrid contribution 1.423 0.852 0.547 1.746 sum 7.444 -31.389 1.998 32.321 Atomic orbital electron populations 1.69979 1.06107 1.27288 1.48831 1.24945 0.94929 0.99490 0.94595 0.86343 0.79868 0.82839 0.77772 1.19588 1.20756 1.20771 1.21256 0.93407 0.90311 1.53344 0.91696 1.19203 0.88199 0.81653 0.98047 1.46397 1.11618 1.05455 1.71456 1.19415 0.88354 0.83830 0.78243 1.90698 1.16136 1.84347 1.51240 1.24054 1.03208 0.95457 1.08782 1.86246 0.97966 0.91930 1.92041 1.26911 1.00204 0.86816 1.05009 1.78207 0.99600 1.14810 1.21884 1.78099 1.20881 0.93723 1.25286 1.22433 0.82000 0.91499 0.99672 1.58753 1.14632 1.01512 1.42581 1.22464 0.99856 0.95266 0.90412 1.21609 0.97167 0.93412 1.03116 1.21635 0.95225 1.00615 0.98828 1.21660 1.01088 0.93334 0.99520 1.22114 0.83239 0.97155 1.03197 1.45493 1.06010 1.03777 1.60631 1.22203 0.78423 0.97338 1.08108 1.23770 0.96979 1.02287 0.98184 1.23589 1.00166 1.04635 0.93095 0.92442 0.95182 0.95200 0.77232 0.86241 0.86334 0.93209 0.89544 0.90603 0.90557 0.91181 0.91846 0.90724 0.90439 0.89013 0.92773 0.83123 0.86035 0.86198 0.86763 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.64 7.60 -52.48 -0.40 1.24 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.70 -14.47 5.55 -61.47 -0.34 -14.81 16 11 C 0.52 10.09 7.85 -10.99 -0.09 10.00 16 12 O -0.54 -12.44 15.87 5.55 0.09 -12.36 16 13 C -0.16 -2.46 6.06 36.01 0.22 -2.24 16 14 S 0.09 1.27 16.35 -107.50 -1.76 -0.48 16 15 C 0.19 2.74 7.91 -88.37 -0.70 2.04 16 16 N -0.31 -5.11 12.29 30.67 0.38 -4.73 16 17 N -0.34 -5.34 11.69 30.38 0.36 -4.98 16 18 C 0.41 5.12 7.22 -318.44 -2.30 2.82 16 19 N -0.45 -4.13 4.69 -174.44 -0.82 -4.94 16 20 C 0.05 0.31 5.19 -3.83 -0.02 0.29 16 21 C -0.12 -0.51 6.09 -26.64 -0.16 -0.67 16 22 C -0.13 -0.56 6.00 -26.61 -0.16 -0.71 16 23 C -0.12 -0.63 6.09 -26.65 -0.16 -0.80 16 24 C 0.07 0.57 4.87 -3.83 -0.02 0.56 16 25 N -0.46 -5.50 3.12 -110.36 -0.34 -5.84 16 26 C 0.04 0.37 5.13 -67.94 -0.35 0.02 16 27 C -0.17 -1.43 9.67 -26.73 -0.26 -1.69 16 28 C -0.18 -1.30 9.93 -26.73 -0.27 -1.56 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.39 7.02 8.32 -40.82 -0.34 6.68 16 33 H 0.12 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.12 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.52 5.03 -51.93 -0.26 0.26 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.87 7.91 -51.93 -0.41 0.46 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.15 0.94 6.92 -51.93 -0.36 0.58 16 46 H 0.12 1.32 4.26 -26.11 -0.11 1.21 16 47 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.11 1.01 7.69 -51.93 -0.40 0.61 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -34.15 405.89 -12.65 -46.80 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.33 Total: 3.28 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -4.71 Total: 1.23 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.04 Total: -60.34 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.76 Total: -0.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.15 -12.65 -46.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011379755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.337 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds