Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46770 * 2 1 4 4 C 1.50704 * 109.46938 * 180.02562 * 3 2 1 5 5 C 1.36503 * 119.93970 * 94.99859 * 4 3 2 6 6 C 1.40586 * 118.92372 * 180.02562 * 5 4 3 7 7 O 1.22011 * 120.63328 * 179.97438 * 6 5 4 8 8 N 1.35017 * 118.73514 * 359.97438 * 6 5 4 9 9 H 0.96998 * 120.12520 * 179.97438 * 8 6 5 10 10 C 1.36190 * 119.75803 * 359.97438 * 8 6 5 11 11 S 1.76193 * 119.44594 * 179.97438 * 10 8 6 12 12 C 1.81002 * 100.00049 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47156 * 180.02562 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47162 * 90.00410 * 16 15 13 18 18 H 1.07998 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00057 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47241 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47303 * 119.99759 * 21 19 17 24 24 H 1.48495 * 109.47340 * 239.99921 * 21 19 17 25 25 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 26 26 C 1.53001 * 109.47305 * 89.99580 * 25 15 13 27 27 C 1.47208 * 109.47132 * 179.97438 * 26 25 15 28 28 N 5.47041 * 74.05823 * 95.04890 * 2 1 3 29 29 N 1.31920 * 121.10638 * 0.25944 * 10 8 6 30 30 H 1.09001 * 109.47073 * 299.99636 * 1 2 3 31 31 H 1.08996 * 109.47181 * 60.00459 * 1 2 3 32 32 H 1.09007 * 109.46551 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47431 * 239.99722 * 2 1 3 34 34 H 1.08996 * 109.47181 * 119.99541 * 2 1 3 35 35 H 1.08993 * 109.47279 * 60.00192 * 3 2 1 36 36 H 1.08996 * 109.46894 * 299.99717 * 3 2 1 37 37 H 1.08003 * 120.53694 * 0.02562 * 5 4 3 38 38 H 1.09002 * 109.47115 * 60.00094 * 12 11 10 39 39 H 1.09001 * 109.46925 * 300.00251 * 12 11 10 40 40 H 1.09000 * 109.47018 * 209.99971 * 16 15 13 41 41 H 1.09000 * 109.47828 * 330.00266 * 16 15 13 42 42 H 0.97001 * 119.99961 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.47028 * 209.99878 * 25 15 13 44 44 H 1.09002 * 109.47109 * 329.99455 * 25 15 13 45 45 H 1.09001 * 109.47263 * 299.99631 * 26 25 15 46 46 H 1.08996 * 109.47107 * 60.00334 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2277 1.5459 -1.1793 6 6 5.6334 1.5432 -1.1551 7 8 6.2732 1.6334 -2.1901 8 7 6.2619 1.4389 0.0353 9 1 7.2310 1.4346 0.0754 10 6 5.5302 1.3397 1.1797 11 16 6.3589 1.2033 2.7286 12 6 4.9336 1.1070 3.8401 13 6 5.4139 0.9826 5.2631 14 8 6.6027 0.9616 5.5022 15 7 4.5223 0.8957 6.2701 16 6 4.9892 0.7753 7.6535 17 6 5.1501 2.1495 8.2508 18 1 4.9272 3.0250 7.6589 19 6 5.5818 2.2891 9.5527 20 7 5.8527 1.2230 10.2735 21 14 5.7805 3.9925 10.2933 22 1 5.4136 5.0173 9.2832 23 1 4.8938 4.1240 11.4773 24 1 7.1926 4.1903 10.7080 25 6 3.0864 0.9216 5.9813 26 6 2.5856 -0.5064 5.7559 27 6 1.1425 -0.4804 5.4663 28 7 0.0275 -0.4629 5.2396 29 7 4.2114 1.3385 1.1474 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 3.6951 1.6283 -2.1152 38 1 4.3301 0.2367 3.5826 39 1 4.3315 2.0099 3.7379 40 1 4.2612 0.2095 8.2347 41 1 5.9483 0.2576 7.6696 42 1 6.1561 1.3212 11.1897 43 1 2.5544 1.3646 6.8233 44 1 2.9067 1.5154 5.0851 45 1 3.1175 -0.9493 4.9139 46 1 2.7652 -1.1001 6.6521 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011443344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -17.925714 kcal Electronic energy + Delta-G solvation = -29708.937587 eV Core-core repulsion = 25532.125163 eV Total energy + Delta-G solvation = -4176.812424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.73834 -39.51530 -38.03991 -36.95018 -36.14590 -35.46028 -33.77240 -33.06001 -31.54280 -31.01591 -30.22492 -27.99448 -27.03634 -25.22430 -24.19863 -23.38005 -22.94178 -21.53878 -19.64253 -18.76146 -18.50009 -17.93059 -17.63550 -16.91947 -16.58400 -16.26637 -15.92617 -15.48873 -15.23237 -15.17792 -14.83835 -14.76237 -14.34135 -14.16708 -13.96760 -13.81199 -13.68755 -13.36409 -13.15658 -12.79640 -12.54588 -12.47217 -12.45753 -12.18531 -12.11994 -11.84690 -11.75326 -11.42433 -11.12803 -11.08596 -11.03219 -10.97113 -10.87713 -10.73038 -10.48456 -10.35873 -10.30185 -9.83277 -9.45015 -9.26666 -8.57797 -8.14608 -8.03817 -6.19662 -4.24926 0.15910 0.52321 1.48210 1.54938 2.58653 2.62643 2.73586 2.92736 3.21864 3.24401 3.30741 3.32542 3.44026 3.76684 4.00468 4.25909 4.32492 4.62546 4.64489 4.71034 4.76833 4.82916 4.87380 5.02887 5.06380 5.12616 5.16477 5.21750 5.31682 5.35166 5.40277 5.48381 5.57357 5.68897 5.78268 5.84418 5.93768 5.96411 6.07099 6.18466 6.68882 7.14191 7.23883 7.27732 7.50411 7.57646 7.75309 7.95470 8.03232 8.50685 8.79952 9.41370 10.88547 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009469 B = 0.002825 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.210742 B = 9910.328293 C =12050.981603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.074 4.074 4 C 0.203 3.797 5 C -0.306 4.306 6 C 0.531 3.469 7 O -0.544 6.544 8 N -0.617 5.617 9 H 0.421 0.579 10 C 0.355 3.645 11 S 0.089 5.911 12 C -0.144 4.144 13 C 0.523 3.477 14 O -0.519 6.519 15 N -0.585 5.585 16 C 0.245 3.755 17 C -0.532 4.532 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 C 0.113 3.887 26 C -0.050 4.050 27 C 0.215 3.785 28 N -0.441 5.441 29 N -0.545 5.545 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.039 0.961 41 H 0.049 0.951 42 H 0.264 0.736 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -2.995 -17.305 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.112 4.112 4 C 0.078 3.922 5 C -0.335 4.335 6 C 0.330 3.670 7 O -0.423 6.423 8 N -0.259 5.259 9 H 0.260 0.740 10 C -0.016 4.016 11 S 0.324 5.676 12 C -0.296 4.296 13 C 0.306 3.694 14 O -0.395 6.395 15 N -0.316 5.316 16 C 0.126 3.874 17 C -0.571 4.571 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.013 4.013 26 C -0.091 4.091 27 C -0.103 4.103 28 N -0.118 5.118 29 N -0.274 5.274 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.171 0.829 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.117 0.883 44 H 0.097 0.903 45 H 0.124 0.876 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.867 -3.066 -17.056 18.640 hybrid contribution -0.056 1.024 -0.396 1.099 sum -6.924 -2.042 -17.452 18.886 Atomic orbital electron populations 1.21764 0.95025 1.02050 1.02069 1.21444 0.96221 0.94939 1.02725 1.20697 0.87433 0.98820 1.04272 1.21152 0.96997 0.86387 0.87673 1.22508 0.92618 1.17553 1.00772 1.17120 0.89664 0.78122 0.82127 1.90996 1.68481 1.52479 1.30359 1.44713 1.12685 1.61690 1.06827 0.74002 1.26080 0.91594 0.90204 0.93745 1.86857 1.06283 1.86811 0.87671 1.24048 1.00246 1.09526 0.95766 1.19380 0.86811 0.78352 0.84823 1.90763 1.15471 1.49588 1.83712 1.48128 1.04071 1.70362 1.09023 1.19462 0.96670 0.97884 0.73339 1.21415 1.45887 0.92405 0.97397 0.92176 1.24907 0.94918 0.97085 0.96952 1.69919 1.45118 1.28443 1.09541 0.86453 0.77944 0.84070 0.79039 1.19737 1.20933 1.20831 1.21413 0.82978 0.93440 1.03491 1.19863 0.82440 1.01507 1.05314 1.29100 0.94987 0.93267 0.92959 1.81300 1.12619 1.08440 1.09439 1.68801 1.02875 1.26704 1.29034 0.92335 0.92615 0.92457 0.91788 0.91286 0.89247 0.89619 0.82939 0.85562 0.85311 0.94274 0.93279 0.92591 0.88284 0.90275 0.87599 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 3 C -0.07 -0.53 5.54 -27.88 -0.15 -0.69 16 4 C 0.20 1.92 6.02 -82.69 -0.50 1.42 16 5 C -0.31 -3.23 9.65 -39.32 -0.38 -3.61 16 6 C 0.53 6.60 7.74 -15.27 -0.12 6.48 16 7 O -0.54 -8.57 17.97 4.91 0.09 -8.48 16 8 N -0.62 -6.24 5.32 -14.79 -0.08 -6.32 16 9 H 0.42 3.46 8.82 -40.82 -0.36 3.10 16 10 C 0.36 3.55 7.96 -88.12 -0.70 2.85 16 11 S 0.09 0.94 21.33 -107.50 -2.29 -1.35 16 12 C -0.14 -1.53 3.85 36.01 0.14 -1.39 16 13 C 0.52 8.14 7.69 -10.98 -0.08 8.06 16 14 O -0.52 -10.44 15.44 5.56 0.09 -10.35 16 15 N -0.58 -9.23 2.46 -175.06 -0.43 -9.66 16 16 C 0.24 5.26 5.16 -5.19 -0.03 5.23 16 17 C -0.53 -13.22 9.39 -34.44 -0.32 -13.54 16 18 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -24.21 13.29 55.43 0.74 -23.47 16 21 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.11 1.26 5.17 -4.05 -0.02 1.24 16 26 C -0.05 -0.43 6.03 -29.51 -0.18 -0.61 16 27 C 0.22 2.26 15.44 -20.69 -0.32 1.94 16 28 N -0.44 -5.84 18.55 42.23 0.78 -5.05 16 29 N -0.54 -5.43 9.06 -9.32 -0.08 -5.51 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.50 8.04 -51.93 -0.42 0.09 16 37 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 38 H 0.13 1.03 7.16 -51.92 -0.37 0.66 16 39 H 0.13 1.22 7.38 -51.92 -0.38 0.84 16 40 H 0.04 0.83 8.07 -51.93 -0.42 0.42 16 41 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 42 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 44 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 45 H 0.11 0.69 7.22 -51.93 -0.38 0.32 16 46 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 414.99 15.07 6.25 6.25 Total: -1.00 -33.32 414.99 -8.90 -42.22 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.39 Total: -0.89 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -2.55 Total: 7.37 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.93 Total: -50.01 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.29 Total: -1.35 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.32 -8.90 -42.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011443344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.295 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds