Wall clock time and date at job start Tue Mar 31 2020 05:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46985 * 2 1 4 4 C 1.52999 * 109.46679 * 240.00182 * 2 1 3 5 5 C 1.50701 * 109.47053 * 120.00084 * 2 1 3 6 6 C 1.38425 * 119.81734 * 59.99884 * 5 2 1 7 7 C 1.37858 * 120.18207 * 180.02562 * 6 5 2 8 8 C 1.39951 * 119.81136 * 359.97438 * 7 6 5 9 9 C 1.46978 * 120.17902 * 180.02562 * 8 7 6 10 10 C 1.35637 * 120.00083 * 353.99575 * 9 8 7 11 11 O 1.35366 * 126.21939 * 4.80659 * 10 9 8 12 12 C 1.35098 * 111.83000 * 179.87898 * 11 10 9 13 13 C 1.38892 * 131.36072 * 180.10904 * 12 11 10 14 14 C 1.38699 * 119.99207 * 180.31591 * 13 12 11 15 15 O 1.35579 * 119.72311 * 179.97438 * 14 13 12 16 16 C 1.34770 * 116.99785 * 5.69643 * 15 14 13 17 17 H 1.08004 * 120.00576 * 354.92494 * 16 15 14 18 18 C 1.38749 * 120.00070 * 174.93248 * 16 15 14 19 19 N 1.31494 * 119.99855 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00379 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46736 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.46921 * 119.99497 * 20 18 16 23 23 H 1.48489 * 109.47055 * 239.99569 * 20 18 16 24 24 C 1.39381 * 120.55188 * 0.02562 * 14 13 12 25 25 C 1.36557 * 120.13566 * 359.94676 * 24 14 13 26 26 C 1.39600 * 119.90724 * 0.05659 * 25 24 14 27 27 C 1.47176 * 126.22584 * 185.13113 * 10 9 8 28 28 O 1.21867 * 127.74267 * 359.97438 * 27 10 9 29 29 C 1.39956 * 119.64273 * 0.26944 * 8 7 6 30 30 C 1.37860 * 119.81104 * 359.47480 * 29 8 7 31 31 H 1.09005 * 109.47093 * 300.00224 * 1 2 3 32 32 H 1.09000 * 109.47227 * 59.99534 * 1 2 3 33 33 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46534 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46990 * 299.99734 * 3 2 1 36 36 H 1.08997 * 109.47532 * 60.00243 * 3 2 1 37 37 H 1.09004 * 109.47234 * 299.99664 * 4 2 1 38 38 H 1.09000 * 109.47319 * 59.99697 * 4 2 1 39 39 H 1.08994 * 109.46951 * 180.02562 * 4 2 1 40 40 H 1.08002 * 119.90856 * 0.02562 * 6 5 2 41 41 H 1.07998 * 120.09260 * 179.97438 * 7 6 5 42 42 H 1.07998 * 120.00411 * 173.99052 * 9 8 7 43 43 H 1.08000 * 120.00216 * 0.33449 * 13 12 11 44 44 H 0.96996 * 119.99929 * 180.02562 * 19 18 16 45 45 H 1.07995 * 119.93182 * 179.97438 * 24 14 13 46 46 H 1.07996 * 120.04175 * 180.02562 * 25 24 14 47 47 H 1.08002 * 120.09242 * 179.70390 * 29 8 7 48 48 H 1.07992 * 119.90430 * 180.25563 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2305 6 6 1.6956 -2.0357 1.4457 7 6 2.1505 -2.6928 2.5691 8 6 2.9554 -2.0162 3.4927 9 6 3.4453 -2.7090 4.6928 10 6 3.0204 -3.9667 4.9708 11 8 2.2239 -4.7330 4.1892 12 6 1.9839 -5.9398 4.7469 13 6 1.2358 -7.0231 4.3041 14 6 1.1423 -8.1663 5.0839 15 8 0.4102 -9.2203 4.6466 16 6 -0.0993 -9.1368 3.4017 17 1 0.0131 -8.2262 2.8320 18 6 -0.7685 -10.2208 2.8519 19 7 -0.9051 -11.3297 3.5452 20 14 -1.4754 -10.1050 1.1266 21 1 -1.1894 -8.7608 0.5638 22 1 -0.8549 -11.1445 0.2666 23 1 -2.9441 -10.3172 1.1783 24 6 1.7938 -8.2402 6.3138 25 6 2.5335 -7.1835 6.7624 26 6 2.6360 -6.0268 5.9877 27 6 3.3360 -4.7441 6.1800 28 8 4.0219 -4.4033 7.1279 29 6 3.2870 -0.6748 3.2701 30 6 2.8281 -0.0340 2.1390 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6766 -1.7489 -1.2493 38 1 1.6765 -0.2074 -2.1392 39 1 3.1299 -0.7216 -1.2491 40 1 1.0748 -2.5564 0.7317 41 1 1.8866 -3.7266 2.7358 42 1 4.1438 -2.2167 5.3533 43 1 0.7272 -6.9753 3.3525 44 1 -1.3726 -12.0876 3.1607 45 1 1.7139 -9.1351 6.9131 46 1 3.0380 -7.2426 7.7155 47 1 3.9036 -0.1443 3.9805 48 1 3.0865 0.9997 1.9636 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011869118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:57 Heat of formation + Delta-G solvation = -20.304003 kcal Electronic energy + Delta-G solvation = -31108.896249 eV Core-core repulsion = 26867.784336 eV Total energy + Delta-G solvation = -4241.111913 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.151 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.80421 -39.95037 -38.99005 -37.84162 -36.87525 -35.97790 -32.89231 -32.62522 -31.26635 -30.22034 -29.77356 -28.67096 -27.62926 -27.50231 -26.12856 -24.77435 -23.02185 -22.51914 -22.06999 -20.69343 -20.15017 -19.40973 -18.32018 -17.80423 -17.04232 -16.33808 -15.99591 -15.95760 -15.51967 -15.25766 -14.65584 -14.54114 -14.45443 -14.31554 -13.98659 -13.96368 -13.84910 -13.63678 -13.43758 -13.43152 -13.17439 -13.03189 -12.93018 -12.40425 -12.25513 -12.16901 -12.02282 -11.96185 -11.95750 -11.49133 -11.47101 -11.27076 -11.01726 -11.00080 -10.81569 -10.63811 -10.63420 -9.92385 -9.87765 -9.36622 -9.16880 -8.99512 -8.48165 -7.70607 -7.62799 -6.84003 -4.38090 0.17110 1.34902 1.38823 1.93077 2.22346 2.92562 2.93913 2.97351 3.02942 3.20515 3.69088 3.79902 3.95900 4.25488 4.33855 4.48670 4.71885 4.74095 4.83891 4.86135 4.91597 4.96531 5.01997 5.10229 5.24714 5.30722 5.35513 5.37179 5.43713 5.48079 5.52639 5.60731 5.61337 5.68065 5.76584 5.78211 5.83740 5.92483 5.96429 6.03185 6.03550 6.07898 6.09339 6.31822 6.44776 6.52712 6.57440 6.68479 6.79932 6.89530 6.95268 7.04757 7.12950 7.53930 7.61544 7.73090 8.59684 9.21705 10.31197 Molecular weight = 364.15amu Principal moments of inertia in cm(-1) A = 0.007813 B = 0.002735 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3583.126400 B =10236.759533 C =13615.174206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.031 4.031 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.066 4.066 6 C -0.117 4.117 7 C -0.098 4.098 8 C -0.069 4.069 9 C -0.064 4.064 10 C -0.011 4.011 11 O -0.217 6.217 12 C 0.175 3.825 13 C -0.254 4.254 14 C 0.201 3.799 15 O -0.142 6.142 16 C -0.393 4.393 17 H 0.103 0.897 18 C 0.045 3.955 19 N -0.840 5.840 20 Si 0.947 3.053 21 H -0.262 1.262 22 H -0.271 1.271 23 H -0.272 1.272 24 C -0.213 4.213 25 C 0.027 3.973 26 C -0.362 4.362 27 C 0.415 3.585 28 O -0.455 6.455 29 C -0.099 4.099 30 C -0.128 4.128 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.157 0.843 43 H 0.142 0.858 44 H 0.278 0.722 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 19.845 -6.680 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.066 4.066 6 C -0.135 4.135 7 C -0.115 4.115 8 C -0.069 4.069 9 C -0.083 4.083 10 C -0.055 4.055 11 O -0.126 6.126 12 C 0.131 3.869 13 C -0.274 4.274 14 C 0.142 3.858 15 O -0.041 6.041 16 C -0.468 4.468 17 H 0.121 0.879 18 C -0.163 4.163 19 N -0.471 5.471 20 Si 0.771 3.229 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.232 4.232 25 C 0.008 3.992 26 C -0.365 4.365 27 C 0.299 3.701 28 O -0.336 6.336 29 C -0.118 4.118 30 C -0.146 4.146 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.140 0.860 41 H 0.165 0.835 42 H 0.175 0.825 43 H 0.159 0.841 44 H 0.088 0.912 45 H 0.149 0.851 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.446 19.564 -6.363 21.048 hybrid contribution -0.389 -0.026 -0.819 0.908 sum 4.056 19.538 -7.183 21.208 Atomic orbital electron populations 1.21901 0.93595 1.02345 1.01827 1.19526 0.95796 0.94977 0.92811 1.21962 1.01164 0.95026 1.01899 1.21899 1.01259 1.00433 0.96061 1.19952 0.97043 0.94004 0.95600 1.20950 1.00622 0.94145 0.97809 1.22070 0.95329 1.01043 0.93066 1.18901 0.99349 0.93954 0.94694 1.21699 0.99259 0.90260 0.97092 1.22056 0.96542 0.93477 0.93459 1.84342 1.61351 1.23722 1.43230 1.19325 0.93054 0.84095 0.90438 1.19908 1.10248 0.92037 1.05195 1.19075 0.88075 0.86608 0.92061 1.83943 1.53738 1.34590 1.31845 1.21674 1.34752 1.01802 0.88578 0.87942 1.25487 0.96292 0.94021 1.00536 1.70009 1.36739 1.03007 1.37362 0.85537 0.78843 0.79359 0.79201 1.18587 1.19651 1.19673 1.19930 1.05174 1.00904 0.97213 1.19839 0.93096 0.89356 0.96864 1.20265 1.15751 0.99496 1.01006 1.20489 0.78579 0.86191 0.84807 1.90642 1.33793 1.75927 1.33204 1.21289 0.99520 0.93513 0.97429 1.21032 0.99009 1.00162 0.94409 0.92465 0.92366 0.92207 0.92258 0.92427 0.92251 0.92220 0.92370 0.92472 0.85955 0.83486 0.82536 0.84052 0.91212 0.85073 0.85667 0.85734 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.29 37.16 0.31 -0.79 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -0.97 7.13 37.16 0.26 -0.70 16 4 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 5 C -0.07 -0.68 4.77 -104.48 -0.50 -1.18 16 6 C -0.12 -1.38 8.68 -39.65 -0.34 -1.73 16 7 C -0.10 -1.33 9.31 -39.08 -0.36 -1.70 16 8 C -0.07 -0.89 5.86 -105.07 -0.62 -1.51 16 9 C -0.06 -0.87 9.90 -36.97 -0.37 -1.23 16 10 C -0.01 -0.17 6.86 -36.88 -0.25 -0.43 16 11 O -0.22 -3.84 7.03 0.44 0.00 -3.83 16 12 C 0.18 3.41 7.27 -38.51 -0.28 3.13 16 13 C -0.25 -5.27 9.18 -39.17 -0.36 -5.63 16 14 C 0.20 4.46 6.65 -38.99 -0.26 4.20 16 15 O -0.14 -3.66 9.74 0.75 0.01 -3.65 16 16 C -0.39 -9.91 9.48 30.92 0.29 -9.61 16 17 H 0.10 2.38 5.17 -52.48 -0.27 2.11 16 18 C 0.04 1.11 5.50 -17.51 -0.10 1.02 16 19 N -0.84 -22.34 13.67 55.48 0.76 -21.58 16 20 Si 0.95 18.56 29.55 -169.99 -5.02 13.54 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.21 -4.17 9.93 -39.76 -0.39 -4.56 16 25 C 0.03 0.50 10.04 -39.68 -0.40 0.10 16 26 C -0.36 -6.97 6.34 -104.84 -0.66 -7.63 16 27 C 0.41 7.62 7.80 -32.23 -0.25 7.37 16 28 O -0.45 -8.85 18.06 5.04 0.09 -8.76 16 29 C -0.10 -1.06 9.80 -39.08 -0.38 -1.44 16 30 C -0.13 -1.27 8.95 -39.65 -0.35 -1.62 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.50 7.37 -51.93 -0.38 0.11 16 34 H 0.06 0.39 7.50 -51.93 -0.39 0.00 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.39 7.50 -51.93 -0.39 0.00 16 37 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.12 1.30 7.07 -52.49 -0.37 0.93 16 41 H 0.15 2.22 4.76 -52.53 -0.25 1.97 16 42 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 43 H 0.14 2.87 5.59 -52.49 -0.29 2.58 16 44 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 45 H 0.13 2.37 8.06 -52.49 -0.42 1.94 16 46 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 47 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 48 H 0.13 0.97 5.86 -52.49 -0.31 0.67 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -28.40 399.70 -8.96 -37.36 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.98 Total: 6.02 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -4.84 Total: -25.12 kcal Atomic # 7 Polarization: -22.34 SS G_CDS: 0.76 Total: -21.58 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.10 Total: -16.25 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.40 -8.96 -37.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011869118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.060 kcal (2) G-P(sol) polarization free energy of solvation -28.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds