Wall clock time and date at job start Tue Mar 31 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48501 * 109.47386 * 270.00048 * 3 2 1 5 5 H 1.48503 * 109.47250 * 30.00496 * 3 2 1 6 6 H 1.48500 * 109.46830 * 150.00502 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 S 1.71203 * 119.99567 * 179.97438 * 18 10 9 20 20 N 1.34776 * 120.00258 * 359.97438 * 18 10 9 21 21 C 1.46503 * 119.99811 * 179.97438 * 20 18 10 22 22 C 1.52999 * 109.46648 * 180.02562 * 21 20 18 23 23 N 1.46903 * 109.46812 * 180.02562 * 22 21 20 24 24 C 1.47011 * 111.00124 * 293.63362 * 23 22 21 25 25 C 1.53099 * 109.25818 * 177.60506 * 24 23 22 26 26 O 1.43021 * 109.25646 * 56.85185 * 25 24 23 27 27 C 1.43019 * 113.73418 * 301.32830 * 26 25 24 28 28 C 1.47012 * 110.99792 * 169.99591 * 23 22 21 29 29 H 0.97003 * 120.00022 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 31 31 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 32 32 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 33 33 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 34 34 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 35 35 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 36 36 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 37 37 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 38 38 H 0.96999 * 119.99958 * 0.02562 * 20 18 10 39 39 H 1.08999 * 109.47202 * 299.99963 * 21 20 18 40 40 H 1.08999 * 109.46647 * 60.00491 * 21 20 18 41 41 H 1.08999 * 109.47000 * 299.99733 * 22 21 20 42 42 H 1.08999 * 109.47473 * 60.00093 * 22 21 20 43 43 H 1.08993 * 109.50388 * 297.54580 * 24 23 22 44 44 H 1.08999 * 109.50571 * 57.67377 * 24 23 22 45 45 H 1.08991 * 109.50798 * 296.91646 * 25 24 23 46 46 H 1.08999 * 109.53977 * 176.80382 * 25 24 23 47 47 H 1.09001 * 109.50494 * 298.73180 * 27 26 25 48 48 H 1.09004 * 109.53851 * 178.62895 * 27 26 25 49 49 H 1.08999 * 109.51080 * 302.32928 * 28 23 22 50 50 H 1.08999 * 109.50612 * 62.41899 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 16 3.7540 -5.4247 -1.1716 20 7 2.2025 -3.6109 -2.3371 21 6 2.6789 -4.1663 -3.6064 22 6 2.0326 -3.4096 -4.7685 23 7 2.5098 -3.9669 -6.0413 24 6 3.9463 -3.7120 -6.2224 25 6 4.4132 -4.3594 -7.5288 26 8 3.6320 -3.8502 -8.6132 27 6 2.2280 -4.0816 -8.4697 28 6 1.7389 -3.4314 -7.1728 29 1 -0.4850 0.8401 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.6869 -3.3895 2.0258 33 1 3.6886 -4.5604 1.1348 34 1 0.4412 -4.0092 2.8172 35 1 -1.0179 -5.9028 3.4992 36 1 -0.4700 -8.1797 2.7366 37 1 2.8620 -6.8029 0.6805 38 1 1.5722 -2.8737 -2.3364 39 1 3.7625 -4.0634 -3.6641 40 1 2.4104 -5.2210 -3.6649 41 1 0.9490 -3.5122 -4.7110 42 1 2.3014 -2.3549 -4.7097 43 1 4.1226 -2.6373 -6.2654 44 1 4.5000 -4.1391 -5.3863 45 1 4.2865 -5.4401 -7.4650 46 1 5.4645 -4.1254 -7.6963 47 1 2.0378 -5.1543 -8.4333 48 1 1.6983 -3.6466 -9.3172 49 1 0.6814 -3.6537 -7.0304 50 1 1.8794 -2.3520 -7.2306 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012564634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:36 Heat of formation + Delta-G solvation = 16.677081 kcal Electronic energy + Delta-G solvation = -30581.517086 eV Core-core repulsion = 26542.038247 eV Total energy + Delta-G solvation = -4039.478839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.02683 -39.79226 -38.68952 -36.63793 -35.04084 -33.31300 -32.31700 -31.47709 -31.32745 -29.84479 -28.29058 -26.85885 -25.42885 -24.30135 -24.09307 -23.15979 -22.36235 -21.90799 -20.76442 -20.38709 -17.54325 -17.26354 -17.05192 -16.61960 -16.44236 -16.33487 -15.86700 -15.65589 -15.26224 -15.12102 -15.07856 -14.94751 -14.40046 -14.32119 -13.93483 -13.68379 -13.46269 -13.26792 -12.80682 -12.75562 -12.62398 -12.29476 -12.22767 -11.97192 -11.69386 -11.65605 -11.58919 -11.30111 -11.26462 -11.02867 -10.88692 -10.72664 -10.65088 -10.28486 -9.95652 -9.88809 -9.56172 -9.18989 -8.90701 -8.79590 -8.63825 -8.25969 -7.23549 -6.90660 -6.50201 -4.62431 1.31474 1.55534 2.10991 2.53911 3.02932 3.05613 3.12027 3.15660 3.57391 3.68741 4.00092 4.08821 4.23775 4.60009 4.72706 4.73719 4.76650 4.82525 4.93392 4.98449 5.03632 5.11566 5.14722 5.18122 5.24737 5.32778 5.34400 5.39278 5.46984 5.57018 5.58355 5.65315 5.75345 5.84262 5.92645 6.01071 6.10411 6.13422 6.22851 6.34638 6.53936 6.61765 6.69113 6.70203 6.77973 6.92209 7.02748 7.07987 7.40635 7.52685 7.60631 7.86446 8.27833 8.46367 9.08194 10.54932 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.006864 B = 0.003261 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4078.048376 B = 8583.024179 C =11514.691375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.066 0.934 9 C 0.227 3.773 10 N -0.541 5.541 11 C 0.158 3.842 12 C -0.154 4.154 13 C -0.060 4.060 14 C -0.186 4.186 15 C 0.092 3.908 16 N -0.493 5.493 17 C 0.126 3.874 18 C 0.581 3.419 19 S -0.708 6.708 20 N -0.683 5.683 21 C 0.134 3.866 22 C 0.042 3.958 23 N -0.529 5.529 24 C 0.010 3.990 25 C 0.064 3.936 26 O -0.388 6.388 27 C 0.065 3.935 28 C 0.018 3.982 29 H 0.269 0.731 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.182 0.818 38 H 0.408 0.592 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -5.931 -6.967 9.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.085 0.915 9 C 0.105 3.895 10 N -0.245 5.245 11 C 0.034 3.966 12 C -0.157 4.157 13 C -0.086 4.086 14 C -0.206 4.206 15 C -0.065 4.065 16 N -0.202 5.202 17 C -0.032 4.032 18 C 0.217 3.783 19 S -0.581 6.581 20 N -0.316 5.316 21 C 0.009 3.991 22 C -0.087 4.087 23 N -0.255 5.255 24 C -0.118 4.118 25 C -0.012 4.012 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.079 0.921 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.198 0.802 38 H 0.248 0.752 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.589 -7.832 -7.412 10.800 hybrid contribution -1.023 3.835 0.659 4.023 sum -0.434 -3.997 -6.753 7.860 Atomic orbital electron populations 1.69911 1.06078 1.27942 1.48355 1.24944 0.94902 0.99552 0.94042 0.86415 0.79928 0.82279 0.78506 1.20369 1.20796 1.19483 1.21378 0.93812 0.89703 1.53902 0.91531 1.19721 0.87690 0.82806 0.99234 1.47449 1.42109 1.31897 1.03048 1.20575 0.98364 0.93705 0.83981 1.21230 0.97978 0.96846 0.99661 1.21630 0.92736 0.99655 0.94608 1.22054 1.01364 0.94130 1.03029 1.22767 0.94106 0.95943 0.93690 1.67845 1.04660 1.36294 1.11366 1.23673 0.97867 0.87636 0.93990 1.21821 0.86203 0.88302 0.81987 1.92932 1.41842 1.28302 1.94996 1.44834 1.46151 1.36569 1.04018 1.21438 0.99760 0.98733 0.79173 1.22279 1.00601 0.97037 0.88760 1.62052 1.03337 1.58622 1.01462 1.22932 0.89186 0.99890 0.99757 1.22681 0.95333 0.98199 0.85037 1.87977 1.17768 1.80658 1.44261 1.22651 0.81843 1.00278 0.96455 1.22799 0.98942 0.98002 0.91322 0.92082 0.94878 0.93212 0.88654 0.86727 0.84838 0.85261 0.83423 0.80153 0.75168 0.90037 0.89209 0.89918 0.93627 0.93713 0.88590 0.91985 0.88353 0.92120 0.88505 0.89441 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.17 13.29 55.43 0.74 -21.43 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 19.07 29.54 -169.99 -5.02 14.05 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.55 -12.79 9.39 -34.44 -0.32 -13.11 16 8 H 0.07 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.23 4.76 4.93 -5.19 -0.03 4.73 16 10 N -0.54 -10.16 2.44 -178.46 -0.44 -10.60 16 11 C 0.16 2.68 5.37 -5.19 -0.03 2.65 16 12 C -0.15 -2.51 5.48 -104.48 -0.57 -3.08 16 13 C -0.06 -0.89 9.86 -39.28 -0.39 -1.27 16 14 C -0.19 -2.46 10.11 -39.44 -0.40 -2.86 16 15 C 0.09 1.29 11.18 -17.54 -0.20 1.09 16 16 N -0.49 -8.29 10.36 -13.25 -0.14 -8.43 16 17 C 0.13 2.17 10.46 -17.55 -0.18 1.99 16 18 C 0.58 10.93 7.70 -86.92 -0.67 10.26 16 19 S -0.71 -14.17 24.67 -107.50 -2.65 -16.82 16 20 N -0.68 -11.42 5.42 -62.03 -0.34 -11.76 16 21 C 0.13 1.90 5.07 -4.04 -0.02 1.88 16 22 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 23 N -0.53 -5.92 4.73 -234.32 -1.11 -7.03 16 24 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 25 C 0.06 0.63 7.01 37.21 0.26 0.89 16 26 O -0.39 -4.32 10.83 -35.23 -0.38 -4.70 16 27 C 0.06 0.59 7.01 37.21 0.26 0.85 16 28 C 0.02 0.17 5.64 -3.71 -0.02 0.15 16 29 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 30 H 0.03 0.72 6.36 -51.93 -0.33 0.39 16 31 H 0.05 1.10 8.07 -51.93 -0.42 0.68 16 32 H 0.10 1.55 8.03 -51.93 -0.42 1.13 16 33 H 0.11 2.00 6.53 -51.93 -0.34 1.66 16 34 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.18 3.34 5.84 -52.49 -0.31 3.03 16 38 H 0.41 6.97 6.20 -40.82 -0.25 6.72 16 39 H 0.08 1.22 6.37 -51.93 -0.33 0.89 16 40 H 0.09 1.38 7.99 -51.93 -0.41 0.97 16 41 H 0.08 0.95 8.04 -51.93 -0.42 0.54 16 42 H 0.05 0.58 8.12 -51.93 -0.42 0.15 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 1.04 6.38 -51.93 -0.33 0.71 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 50 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 412.93 15.07 6.22 6.22 Total: -1.00 -28.14 412.93 -13.30 -41.44 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.75 Total: 12.71 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.44 Total: 6.33 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -1.28 Total: -59.24 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.38 Total: -4.70 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: -14.17 SS G_CDS: -2.65 Total: -16.82 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -28.14 -13.30 -41.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012564634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.121 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds