Wall clock time and date at job start Tue Mar 31 2020 05:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34488 * 125.56499 * 2 1 4 4 C 1.46697 * 106.33206 * 180.02562 * 3 2 1 5 5 C 1.47218 * 126.94451 * 180.02562 * 4 3 2 6 6 O 1.21632 * 120.00483 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00207 * 0.02562 * 5 4 3 8 8 C 1.39140 * 120.00380 * 184.28952 * 7 5 4 9 9 C 1.39509 * 119.83601 * 144.69105 * 8 7 5 10 10 C 1.36362 * 120.16720 * 180.27464 * 9 8 7 11 11 C 1.40882 * 119.82517 * 359.49816 * 10 9 8 12 12 C 1.41140 * 120.15961 * 180.22505 * 11 10 9 13 13 H 1.08000 * 119.99847 * 35.05530 * 12 11 10 14 14 C 1.39899 * 120.00366 * 215.05999 * 12 11 10 15 15 N 1.30878 * 120.00028 * 355.56349 * 14 12 11 16 16 Si 1.86800 * 120.00549 * 175.56083 * 14 12 11 17 17 H 1.48506 * 109.46947 * 59.99862 * 16 14 12 18 18 H 1.48493 * 109.47509 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47118 * 300.00114 * 16 14 12 20 20 C 1.40876 * 119.68018 * 0.50020 * 11 10 9 21 21 C 1.36364 * 119.82975 * 359.75216 * 20 11 10 22 22 C 1.36802 * 106.11161 * 0.26166 * 4 3 2 23 23 C 1.50704 * 125.80477 * 179.74310 * 22 4 3 24 24 N 1.34665 * 108.39371 * 359.57779 * 22 4 3 25 25 C 1.46491 * 124.85389 * 180.19460 * 24 22 4 26 26 C 1.50699 * 109.47281 * 270.30672 * 25 24 22 27 27 C 1.34524 * 125.78753 * 89.99451 * 26 25 24 28 28 C 1.41377 * 106.83872 * 180.02562 * 27 26 25 29 29 C 1.34519 * 106.84560 * 0.02562 * 28 27 26 30 30 O 1.34298 * 125.79297 * 269.70027 * 26 25 24 31 31 H 1.09000 * 109.47781 * 89.97410 * 1 2 3 32 32 H 1.09005 * 109.46961 * 209.97234 * 1 2 3 33 33 H 1.09001 * 109.46994 * 329.96510 * 1 2 3 34 34 H 1.07992 * 126.83626 * 0.02562 * 3 2 1 35 35 H 0.97006 * 119.99393 * 4.28925 * 7 5 4 36 36 H 1.08000 * 119.91460 * 0.02562 * 9 8 7 37 37 H 1.07990 * 120.08499 * 179.74738 * 10 9 8 38 38 H 0.97001 * 120.00573 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.08553 * 179.72676 * 20 11 10 40 40 H 1.07998 * 119.91744 * 179.97438 * 21 20 11 41 41 H 1.08997 * 109.47163 * 90.02697 * 23 22 4 42 42 H 1.09000 * 109.47070 * 210.02212 * 23 22 4 43 43 H 1.08995 * 109.47404 * 330.02581 * 23 22 4 44 44 H 1.09004 * 109.47506 * 30.31047 * 25 24 22 45 45 H 1.09003 * 109.47197 * 150.31092 * 25 24 22 46 46 H 1.08001 * 126.57592 * 0.04552 * 27 26 25 47 47 H 1.08000 * 126.57819 * 179.97438 * 28 27 26 48 48 H 1.07997 * 125.78709 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0940 0.0000 4 6 3.6743 0.6108 -0.0006 5 6 4.8973 1.4302 -0.0003 6 8 5.9889 0.8937 -0.0014 7 7 4.8075 2.7750 0.0011 8 6 5.9600 3.5494 -0.0887 9 6 5.9340 4.7534 -0.7930 10 6 7.0611 5.5149 -0.8900 11 6 8.2508 5.0881 -0.2679 12 6 9.4202 5.8731 -0.3599 13 1 9.3480 6.9506 -0.3673 14 6 10.6728 5.2554 -0.4415 15 7 10.7680 3.9537 -0.3454 16 14 12.2095 6.2885 -0.6879 17 1 12.3521 7.2409 0.4426 18 1 13.3992 5.4015 -0.7403 19 1 12.0987 7.0447 -1.9612 20 6 8.2693 3.8711 0.4415 21 6 7.1358 3.1177 0.5256 22 6 3.5998 -0.7552 -0.0070 23 6 4.7722 -1.7021 -0.0154 24 7 2.3007 -1.1100 -0.0006 25 6 1.8098 -2.4902 -0.0004 26 6 1.6410 -2.9636 -1.4211 27 6 2.5811 -3.5764 -2.1630 28 6 1.9990 -3.8421 -3.4237 29 6 0.7382 -3.3754 -3.3771 30 8 0.5249 -2.8504 -2.1594 31 1 -0.3635 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5144 34 1 1.9627 2.1234 0.0004 35 1 3.9393 3.2030 0.0648 36 1 5.0201 5.0812 -1.2658 37 1 7.0405 6.4447 -1.4389 38 1 11.6365 3.5254 -0.4016 39 1 9.1790 3.5355 0.9172 40 1 7.1485 2.1843 1.0687 41 1 5.0580 -1.9357 1.0101 42 1 4.4941 -2.6201 -0.5331 43 1 5.6125 -1.2354 -0.5294 44 1 2.5266 -3.1308 0.5134 45 1 0.8496 -2.5342 0.5137 46 1 3.5873 -3.8190 -1.8545 47 1 2.4755 -4.3262 -4.2634 48 1 0.0180 -3.4208 -4.1805 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012803841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:00 Heat of formation + Delta-G solvation = 50.759502 kcal Electronic energy + Delta-G solvation = -31270.529943 eV Core-core repulsion = 27064.792326 eV Total energy + Delta-G solvation = -4205.737617 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 4.27 seconds Orbital eigenvalues (eV) -43.01690 -41.46446 -39.13707 -37.02125 -34.32013 -34.17223 -33.19812 -32.77998 -32.60619 -30.05015 -29.38673 -29.27776 -28.70178 -26.44841 -25.12673 -24.37903 -22.25398 -22.12337 -21.19538 -21.07118 -20.58557 -19.42434 -18.74485 -17.86248 -17.18849 -16.92478 -16.56819 -16.02856 -15.75059 -15.36388 -15.07821 -14.61372 -14.44593 -14.05757 -13.83669 -13.58223 -13.47742 -13.37288 -13.19452 -13.16663 -12.94664 -12.77069 -12.62251 -12.45526 -12.32563 -12.26696 -11.95326 -11.88509 -11.63211 -11.41924 -11.33040 -11.06748 -10.86721 -10.39747 -10.31929 -9.80513 -9.77108 -9.31642 -9.02262 -8.89219 -8.64689 -8.57141 -7.98606 -7.40475 -6.73843 -6.49794 -4.23048 1.15964 1.82614 2.15663 2.30109 2.58736 2.79816 2.88133 3.14761 3.17249 3.17780 3.27034 4.00237 4.04611 4.11370 4.13901 4.30482 4.54962 4.60191 4.72315 4.73951 4.77053 4.83056 5.02850 5.19032 5.34723 5.39380 5.40544 5.49571 5.58821 5.63918 5.65646 5.67351 5.77703 5.86449 6.04469 6.07153 6.25817 6.30456 6.50895 6.67337 6.81226 6.96917 7.01532 7.15044 7.16103 7.17033 7.33188 7.42581 7.75386 7.83835 8.12356 8.19373 8.37065 8.49439 8.77877 8.99428 9.03233 9.16493 10.41136 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.001911 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.147473 B =14645.142522 C =15329.921467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.011 3.989 3 C -0.164 4.164 4 C -0.218 4.218 5 C 0.576 3.424 6 O -0.537 6.537 7 N -0.649 5.649 8 C 0.014 3.986 9 C -0.117 4.117 10 C -0.203 4.203 11 C 0.097 3.903 12 C -0.464 4.464 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.810 5.810 16 Si 0.914 3.086 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.267 1.267 20 C -0.143 4.143 21 C -0.095 4.095 22 C 0.105 3.895 23 C -0.096 4.096 24 N -0.440 5.440 25 C 0.185 3.815 26 C -0.045 4.045 27 C -0.180 4.180 28 C -0.215 4.215 29 C -0.030 4.030 30 O -0.171 6.171 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.394 0.606 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.277 0.723 39 H 0.130 0.870 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.551 -16.139 -1.004 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.228 4.228 5 C 0.365 3.635 6 O -0.416 6.416 7 N -0.291 5.291 8 C -0.078 4.078 9 C -0.137 4.137 10 C -0.223 4.223 11 C 0.095 3.905 12 C -0.495 4.495 13 H 0.092 0.908 14 C -0.146 4.146 15 N -0.437 5.437 16 Si 0.740 3.260 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.163 4.163 21 C -0.114 4.114 22 C -0.010 4.010 23 C -0.153 4.153 24 N -0.119 5.119 25 C 0.063 3.937 26 C -0.096 4.096 27 C -0.200 4.200 28 C -0.234 4.234 29 C -0.098 4.098 30 O -0.066 6.066 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.227 0.773 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.148 0.852 40 H 0.127 0.873 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.126 0.874 46 H 0.169 0.831 47 H 0.169 0.831 48 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -21.008 -16.887 -0.891 26.969 hybrid contribution 0.345 0.499 -0.607 0.858 sum -20.663 -16.388 -1.498 26.416 Atomic orbital electron populations 1.20299 0.87998 1.02923 1.02599 1.20148 0.93381 0.85409 1.10595 1.21797 0.91036 0.97501 1.08495 1.20251 0.93052 0.92163 1.17297 1.17315 0.87533 0.81832 0.76811 1.90734 1.28204 1.72170 1.50481 1.42754 1.08683 1.05311 1.72370 1.17298 0.87260 0.94755 1.08486 1.20086 0.97671 0.95683 1.00289 1.20678 0.94175 1.01401 1.06041 1.17712 0.91711 0.92485 0.88593 1.19413 0.90393 0.94384 1.45354 0.90807 1.25873 1.00570 0.95131 0.93035 1.69788 1.26275 1.09584 1.38047 0.86278 0.80007 0.80064 0.79700 1.19143 1.20502 1.19213 1.21310 0.97085 0.96715 1.01233 1.20673 0.92437 0.99150 0.99189 1.20254 0.84195 0.94160 1.02367 1.20628 0.94961 0.96340 1.03339 1.43520 1.05273 1.05028 1.58093 1.20057 1.02958 0.81765 0.88916 1.22444 0.86018 1.05571 0.95540 1.21752 1.00566 1.03411 0.94316 1.21895 0.95365 1.06798 0.99306 1.24128 0.98891 1.00385 0.86411 1.84006 1.36325 1.63539 1.22754 0.91140 0.92053 0.90093 0.83791 0.77282 0.89233 0.88651 0.91149 0.85218 0.87346 0.90473 0.92331 0.87615 0.86032 0.87438 0.83095 0.83119 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.06 36.00 0.36 -0.25 16 2 C 0.01 0.12 6.85 -81.86 -0.56 -0.44 16 3 C -0.16 -2.14 10.45 -37.49 -0.39 -2.53 16 4 C -0.22 -3.50 6.29 -103.36 -0.65 -4.15 16 5 C 0.58 11.44 7.64 -12.61 -0.10 11.34 16 6 O -0.54 -12.42 12.23 5.25 0.06 -12.35 16 7 N -0.65 -12.64 5.29 -10.77 -0.06 -12.70 16 8 C 0.01 0.34 6.30 -83.60 -0.53 -0.19 16 9 C -0.12 -2.69 9.90 -39.78 -0.39 -3.08 16 10 C -0.20 -5.09 9.74 -39.26 -0.38 -5.47 16 11 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 12 C -0.46 -12.74 9.02 -37.86 -0.34 -13.08 16 13 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 14 C 0.07 1.81 5.42 -17.34 -0.09 1.72 16 15 N -0.81 -22.17 10.59 55.55 0.59 -21.58 16 16 Si 0.91 19.63 29.56 -169.99 -5.03 14.61 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 C -0.14 -3.97 8.61 -39.26 -0.34 -4.31 16 21 C -0.09 -2.45 8.61 -39.78 -0.34 -2.79 16 22 C 0.10 1.44 6.89 -81.87 -0.56 0.88 16 23 C -0.10 -1.18 9.26 36.01 0.33 -0.85 16 24 N -0.44 -4.85 2.67 -109.22 -0.29 -5.14 16 25 C 0.18 1.41 5.89 -5.20 -0.03 1.38 16 26 C -0.05 -0.41 6.90 -35.62 -0.25 -0.65 16 27 C -0.18 -1.63 10.43 -39.70 -0.41 -2.04 16 28 C -0.21 -1.76 10.91 -39.70 -0.43 -2.19 16 29 C -0.03 -0.22 12.09 29.42 0.36 0.13 16 30 O -0.17 -1.57 10.65 5.71 0.06 -1.51 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.38 6.94 -51.93 -0.36 0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.14 1.58 7.70 -52.49 -0.40 1.18 16 35 H 0.39 6.25 7.95 -40.82 -0.32 5.93 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 39 H 0.13 3.74 6.13 -52.48 -0.32 3.42 16 40 H 0.11 2.82 6.22 -52.49 -0.33 2.49 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.55 5.83 -51.93 -0.30 0.25 16 43 H 0.11 1.63 6.47 -51.93 -0.34 1.30 16 44 H 0.12 0.69 7.51 -51.93 -0.39 0.30 16 45 H 0.11 0.60 6.90 -51.93 -0.36 0.24 16 46 H 0.15 1.19 6.74 -52.49 -0.35 0.84 16 47 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 48 H 0.20 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -34.32 400.34 -9.96 -44.28 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -5.98 Total: 12.84 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -5.35 Total: -24.47 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.24 Total: -39.42 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.13 Total: -13.86 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.32 -9.96 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012803841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.036 kcal (2) G-P(sol) polarization free energy of solvation -34.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.27 seconds