Wall clock time and date at job start Tue Mar 31 2020 05:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34488 * 125.56499 * 2 1 4 4 C 1.46697 * 106.33206 * 180.02562 * 3 2 1 5 5 C 1.47218 * 126.94451 * 180.02562 * 4 3 2 6 6 O 1.21632 * 120.00483 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00207 * 0.02562 * 5 4 3 8 8 C 1.39140 * 120.00380 * 184.28952 * 7 5 4 9 9 C 1.39509 * 119.83601 * 144.69105 * 8 7 5 10 10 C 1.36362 * 120.16720 * 180.27464 * 9 8 7 11 11 C 1.40882 * 119.82517 * 359.49816 * 10 9 8 12 12 C 1.41140 * 120.15961 * 180.22505 * 11 10 9 13 13 H 1.08000 * 119.99847 * 35.05530 * 12 11 10 14 14 C 1.39899 * 120.00366 * 215.05999 * 12 11 10 15 15 N 1.30878 * 120.00028 * 355.56349 * 14 12 11 16 16 Si 1.86800 * 120.00549 * 175.56083 * 14 12 11 17 17 H 1.48506 * 109.46947 * 59.99862 * 16 14 12 18 18 H 1.48493 * 109.47509 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47118 * 300.00114 * 16 14 12 20 20 C 1.40876 * 119.68018 * 0.50020 * 11 10 9 21 21 C 1.36364 * 119.82975 * 359.75216 * 20 11 10 22 22 C 1.36802 * 106.11161 * 0.26166 * 4 3 2 23 23 C 1.50704 * 125.80477 * 179.74310 * 22 4 3 24 24 N 1.34665 * 108.39371 * 359.57779 * 22 4 3 25 25 C 1.46491 * 124.85389 * 180.19460 * 24 22 4 26 26 C 1.50699 * 109.47281 * 270.30672 * 25 24 22 27 27 C 1.34524 * 125.78753 * 89.99451 * 26 25 24 28 28 C 1.41377 * 106.83872 * 180.02562 * 27 26 25 29 29 C 1.34519 * 106.84560 * 0.02562 * 28 27 26 30 30 O 1.34298 * 125.79297 * 269.70027 * 26 25 24 31 31 H 1.09000 * 109.47781 * 89.97410 * 1 2 3 32 32 H 1.09005 * 109.46961 * 209.97234 * 1 2 3 33 33 H 1.09001 * 109.46994 * 329.96510 * 1 2 3 34 34 H 1.07992 * 126.83626 * 0.02562 * 3 2 1 35 35 H 0.97006 * 119.99393 * 4.28925 * 7 5 4 36 36 H 1.08000 * 119.91460 * 0.02562 * 9 8 7 37 37 H 1.07990 * 120.08499 * 179.74738 * 10 9 8 38 38 H 0.97001 * 120.00573 * 180.02562 * 15 14 12 39 39 H 1.08003 * 120.08553 * 179.72676 * 20 11 10 40 40 H 1.07998 * 119.91744 * 179.97438 * 21 20 11 41 41 H 1.08997 * 109.47163 * 90.02697 * 23 22 4 42 42 H 1.09000 * 109.47070 * 210.02212 * 23 22 4 43 43 H 1.08995 * 109.47404 * 330.02581 * 23 22 4 44 44 H 1.09004 * 109.47506 * 30.31047 * 25 24 22 45 45 H 1.09003 * 109.47197 * 150.31092 * 25 24 22 46 46 H 1.08001 * 126.57592 * 0.04552 * 27 26 25 47 47 H 1.08000 * 126.57819 * 179.97438 * 28 27 26 48 48 H 1.07997 * 125.78709 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0940 0.0000 4 6 3.6743 0.6108 -0.0006 5 6 4.8973 1.4302 -0.0003 6 8 5.9889 0.8937 -0.0014 7 7 4.8075 2.7750 0.0011 8 6 5.9600 3.5494 -0.0887 9 6 5.9340 4.7534 -0.7930 10 6 7.0611 5.5149 -0.8900 11 6 8.2508 5.0881 -0.2679 12 6 9.4202 5.8731 -0.3599 13 1 9.3480 6.9506 -0.3673 14 6 10.6728 5.2554 -0.4415 15 7 10.7680 3.9537 -0.3454 16 14 12.2095 6.2885 -0.6879 17 1 12.3521 7.2409 0.4426 18 1 13.3992 5.4015 -0.7403 19 1 12.0987 7.0447 -1.9612 20 6 8.2693 3.8711 0.4415 21 6 7.1358 3.1177 0.5256 22 6 3.5998 -0.7552 -0.0070 23 6 4.7722 -1.7021 -0.0154 24 7 2.3007 -1.1100 -0.0006 25 6 1.8098 -2.4902 -0.0004 26 6 1.6410 -2.9636 -1.4211 27 6 2.5811 -3.5764 -2.1630 28 6 1.9990 -3.8421 -3.4237 29 6 0.7382 -3.3754 -3.3771 30 8 0.5249 -2.8504 -2.1594 31 1 -0.3635 0.0005 -1.0276 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3633 0.8897 0.5144 34 1 1.9627 2.1234 0.0004 35 1 3.9393 3.2030 0.0648 36 1 5.0201 5.0812 -1.2658 37 1 7.0405 6.4447 -1.4389 38 1 11.6365 3.5254 -0.4016 39 1 9.1790 3.5355 0.9172 40 1 7.1485 2.1843 1.0687 41 1 5.0580 -1.9357 1.0101 42 1 4.4941 -2.6201 -0.5331 43 1 5.6125 -1.2354 -0.5294 44 1 2.5266 -3.1308 0.5134 45 1 0.8496 -2.5342 0.5137 46 1 3.5873 -3.8190 -1.8545 47 1 2.4755 -4.3262 -4.2634 48 1 0.0180 -3.4208 -4.1805 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012803841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:57 Heat of formation + Delta-G solvation = 32.105628 kcal Electronic energy + Delta-G solvation = -31271.338836 eV Core-core repulsion = 27064.792326 eV Total energy + Delta-G solvation = -4206.546510 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -43.63252 -42.42715 -40.79919 -38.88214 -36.12158 -35.02274 -34.54384 -33.86625 -33.53927 -31.46816 -31.10157 -30.43220 -29.96049 -27.57118 -26.43215 -25.63452 -23.58984 -23.07664 -22.83535 -22.13360 -21.75568 -20.71556 -19.94828 -19.19959 -18.52528 -18.06027 -17.87803 -17.12323 -16.99421 -16.52164 -16.37413 -15.88924 -15.69555 -15.50446 -15.09765 -14.82430 -14.67426 -14.38980 -14.25838 -14.13464 -13.95112 -13.91326 -13.78488 -13.63248 -13.56120 -13.48346 -13.27824 -13.00862 -12.88351 -12.81715 -12.68585 -12.64409 -12.35593 -12.27896 -11.72378 -11.68522 -11.16142 -10.94565 -10.70873 -10.40157 -9.75848 -9.53912 -9.42551 -8.99615 -8.65985 -8.46677 -6.29822 0.48007 0.63613 1.00820 1.15564 1.37542 1.39375 1.51478 1.52897 1.55954 1.92999 2.05631 2.25158 2.56900 2.60684 2.88438 3.53578 3.71094 3.73891 3.75881 3.85074 3.99967 4.09415 4.19842 4.23298 4.27176 4.45449 4.50965 4.53803 4.64277 4.68715 4.80297 4.81431 4.86884 4.91028 5.01684 5.04195 5.10287 5.13249 5.16138 5.18947 5.32762 5.37771 5.48092 5.48758 5.73818 5.79527 5.90681 6.03334 6.12104 6.13803 6.18212 6.28260 6.38661 6.73410 6.84521 6.98453 7.05073 7.52463 8.46177 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.017615 B = 0.001911 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.147473 B =14645.142522 C =15329.921467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.180 4.180 4 C -0.257 4.257 5 C 0.571 3.429 6 O -0.580 6.580 7 N -0.643 5.643 8 C 0.026 3.974 9 C -0.112 4.112 10 C -0.208 4.208 11 C 0.064 3.936 12 C -0.497 4.497 13 H 0.080 0.920 14 C 0.021 3.979 15 N -0.848 5.848 16 Si 0.992 3.008 17 H -0.257 1.257 18 H -0.273 1.273 19 H -0.260 1.260 20 C -0.166 4.166 21 C -0.108 4.108 22 C 0.105 3.895 23 C -0.092 4.092 24 N -0.432 5.432 25 C 0.179 3.821 26 C -0.057 4.057 27 C -0.197 4.197 28 C -0.236 4.236 29 C -0.026 4.026 30 O -0.180 6.180 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.413 0.587 36 H 0.133 0.867 37 H 0.113 0.887 38 H 0.282 0.718 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.163 0.837 48 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.676 -16.502 -1.785 29.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.203 4.203 4 C -0.267 4.267 5 C 0.363 3.637 6 O -0.462 6.462 7 N -0.287 5.287 8 C -0.068 4.068 9 C -0.132 4.132 10 C -0.228 4.228 11 C 0.061 3.939 12 C -0.528 4.528 13 H 0.098 0.902 14 C -0.190 4.190 15 N -0.476 5.476 16 Si 0.813 3.187 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.184 1.184 20 C -0.187 4.187 21 C -0.129 4.129 22 C -0.012 4.012 23 C -0.149 4.149 24 N -0.109 5.109 25 C 0.059 3.941 26 C -0.107 4.107 27 C -0.217 4.217 28 C -0.255 4.255 29 C -0.094 4.094 30 O -0.076 6.076 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.114 0.886 34 H 0.178 0.822 35 H 0.250 0.750 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.153 0.847 46 H 0.173 0.827 47 H 0.181 0.819 48 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -24.211 -17.257 -1.665 29.778 hybrid contribution 1.108 0.425 -0.397 1.251 sum -23.103 -16.832 -2.062 28.659 Atomic orbital electron populations 1.20424 0.85044 1.04708 1.03370 1.20730 0.95034 0.84753 1.08044 1.22013 0.89619 0.99117 1.09573 1.20067 0.92752 0.92971 1.20878 1.17962 0.88418 0.81896 0.75386 1.90713 1.30281 1.72861 1.52336 1.42658 1.08333 1.05266 1.72397 1.17386 0.87685 0.95033 1.06652 1.20434 0.98680 0.94738 0.99330 1.20947 0.93939 1.02251 1.05640 1.18062 0.93272 0.92877 0.89666 1.19715 0.91326 0.94756 1.46956 0.90212 1.26873 1.03828 0.96283 0.92062 1.69916 1.27275 1.11455 1.38968 0.85107 0.75415 0.78244 0.79967 1.18126 1.19782 1.18388 1.21182 0.96931 0.97893 1.02651 1.20673 0.93383 0.98741 1.00059 1.20359 0.85746 0.93696 1.01394 1.20561 0.93552 0.97044 1.03762 1.43732 1.04165 1.06616 1.56401 1.20450 1.04852 0.79992 0.88845 1.22579 0.86070 1.06042 0.96040 1.22026 1.01004 1.03683 0.95006 1.22203 0.96073 1.07637 0.99612 1.24834 0.99331 0.98839 0.86379 1.84002 1.36467 1.63793 1.23370 0.90707 0.90087 0.88579 0.82195 0.74967 0.84969 0.86882 0.90788 0.87604 0.88483 0.89664 0.89348 0.91190 0.84098 0.84724 0.82709 0.81926 0.74557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.06 71.23 0.72 -0.17 16 2 C 0.02 0.42 6.85 40.98 0.28 0.70 16 3 C -0.18 -4.37 10.45 23.62 0.25 -4.13 16 4 C -0.26 -8.20 6.29 -19.04 -0.12 -8.32 16 5 C 0.57 23.31 7.64 86.60 0.66 23.97 16 6 O -0.58 -28.35 12.23 -4.13 -0.05 -28.40 16 7 N -0.64 -25.04 5.29 -306.22 -1.62 -26.66 16 8 C 0.03 1.24 6.30 38.59 0.24 1.48 16 9 C -0.11 -5.03 9.90 22.14 0.22 -4.81 16 10 C -0.21 -10.46 9.74 22.48 0.22 -10.25 16 11 C 0.06 3.65 5.55 -21.27 -0.12 3.53 16 12 C -0.50 -28.13 9.02 23.39 0.21 -27.91 16 13 H 0.08 4.25 7.85 -2.91 -0.02 4.22 16 14 C 0.02 1.11 5.42 85.24 0.46 1.58 16 15 N -0.85 -48.68 10.59 21.82 0.23 -48.45 16 16 Si 0.99 40.92 29.56 68.60 2.03 42.95 16 17 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 20 C -0.17 -9.79 8.61 22.48 0.19 -9.60 16 21 C -0.11 -5.92 8.61 22.14 0.19 -5.73 16 22 C 0.10 2.82 6.89 41.79 0.29 3.11 16 23 C -0.09 -2.29 9.26 71.24 0.66 -1.63 16 24 N -0.43 -8.51 2.67 -499.48 -1.33 -9.85 16 25 C 0.18 2.19 5.89 85.63 0.50 2.69 16 26 C -0.06 -0.89 6.90 24.83 0.17 -0.72 16 27 C -0.20 -3.25 10.43 22.19 0.23 -3.02 16 28 C -0.24 -3.46 10.91 22.19 0.24 -3.22 16 29 C -0.03 -0.32 12.09 66.97 0.81 0.49 16 30 O -0.18 -2.83 10.65 -2.49 -0.03 -2.85 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.62 6.94 -2.38 -0.02 0.61 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.16 3.16 7.70 -2.91 -0.02 3.14 16 35 H 0.41 12.63 7.95 -92.70 -0.74 11.89 16 36 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.11 5.18 8.06 -2.92 -0.02 5.16 16 38 H 0.28 14.84 8.30 -92.71 -0.77 14.08 16 39 H 0.11 6.62 6.13 -2.91 -0.02 6.60 16 40 H 0.10 5.43 6.22 -2.91 -0.02 5.41 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.09 1.58 5.83 -2.39 -0.01 1.57 16 43 H 0.07 2.30 6.47 -2.39 -0.02 2.28 16 44 H 0.14 1.16 7.51 -2.38 -0.02 1.15 16 45 H 0.13 0.94 6.90 -2.39 -0.02 0.92 16 46 H 0.16 2.26 6.74 -2.91 -0.02 2.24 16 47 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 48 H 0.24 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -79.82 400.34 5.82 -74.00 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: 0.28 Total: 41.19 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 6.31 Total: -41.93 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.72 Total: -84.95 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.08 Total: -31.25 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -79.82 5.82 -74.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012803841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.102 kcal (2) G-P(sol) polarization free energy of solvation -79.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds