Wall clock time and date at job start Tue Mar 31 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46989 * 2 1 4 4 C 1.53004 * 109.46938 * 239.99642 * 2 1 3 5 5 C 1.50692 * 109.47061 * 119.99906 * 2 1 3 6 6 C 1.38408 * 119.83014 * 59.99624 * 5 2 1 7 7 C 1.37889 * 120.17569 * 179.97438 * 6 5 2 8 8 C 1.39844 * 119.82395 * 0.02562 * 7 6 5 9 9 C 1.47190 * 120.17118 * 179.97438 * 8 7 6 10 10 C 1.34836 * 120.00138 * 180.02562 * 9 8 7 11 11 C 1.46390 * 119.99854 * 180.02562 * 10 9 8 12 12 O 1.21715 * 120.00296 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99590 * 179.97438 * 11 10 9 14 14 C 1.39880 * 119.99530 * 185.21851 * 13 11 10 15 15 C 1.38946 * 120.00395 * 33.69840 * 14 13 11 16 16 C 1.37998 * 119.99171 * 180.30038 * 15 14 13 17 17 C 1.38918 * 120.00567 * 359.46645 * 16 15 14 18 18 O 1.35770 * 120.00080 * 180.23262 * 17 16 15 19 19 C 1.34807 * 117.00534 * 186.18044 * 18 17 16 20 20 H 1.08003 * 119.99510 * 5.41382 * 19 18 17 21 21 C 1.38624 * 120.00429 * 185.40527 * 19 18 17 22 22 N 1.31579 * 119.99866 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00236 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47052 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.46920 * 210.00128 * 23 21 19 26 26 H 1.48497 * 109.46862 * 330.00195 * 23 21 19 27 27 C 1.38915 * 120.00424 * 0.51020 * 17 16 15 28 28 C 1.37994 * 120.00858 * 359.77016 * 27 17 16 29 29 C 1.39848 * 119.65751 * 0.25514 * 8 7 6 30 30 C 1.37886 * 119.82411 * 359.46676 * 29 8 7 31 31 H 1.09001 * 109.47056 * 300.00131 * 1 2 3 32 32 H 1.08997 * 109.47123 * 59.99834 * 1 2 3 33 33 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46860 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46621 * 299.99496 * 3 2 1 36 36 H 1.08988 * 109.47488 * 59.99715 * 3 2 1 37 37 H 1.09003 * 109.46945 * 300.00275 * 4 2 1 38 38 H 1.09005 * 109.46862 * 60.00008 * 4 2 1 39 39 H 1.08991 * 109.46918 * 180.02562 * 4 2 1 40 40 H 1.08003 * 119.91074 * 359.97438 * 6 5 2 41 41 H 1.07992 * 120.09018 * 180.02562 * 7 6 5 42 42 H 1.08002 * 120.00289 * 0.02562 * 9 8 7 43 43 H 1.07993 * 120.00120 * 359.97438 * 10 9 8 44 44 H 0.96995 * 119.99857 * 5.21333 * 13 11 10 45 45 H 1.07995 * 120.00885 * 0.02562 * 15 14 13 46 46 H 1.07999 * 120.00122 * 179.69657 * 16 15 14 47 47 H 0.97003 * 119.99671 * 179.97438 * 22 21 19 48 48 H 1.08002 * 119.99809 * 179.74684 * 27 17 16 49 49 H 1.08003 * 120.00394 * 179.97438 * 28 27 17 50 50 H 1.08004 * 120.08040 * 179.74516 * 29 8 7 51 51 H 1.08001 * 119.90963 * 180.27446 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0324 -0.7104 1.2304 6 6 1.6958 -2.0355 1.4460 7 6 2.1519 -2.6925 2.5692 8 6 2.9561 -2.0163 3.4920 9 6 3.4468 -2.7101 4.6938 10 6 4.2216 -2.0547 5.5816 11 6 4.7100 -2.7450 6.7766 12 8 4.4163 -3.9104 6.9690 13 7 5.4849 -2.0899 7.6637 14 6 6.0413 -2.7771 8.7476 15 6 6.4225 -4.1058 8.6062 16 6 6.9656 -4.7853 9.6775 17 6 7.1415 -4.1379 10.8939 18 8 7.6802 -4.8052 11.9465 19 6 7.7059 -4.1618 13.1308 20 1 7.2311 -3.1970 13.2316 21 6 8.3416 -4.7386 14.2194 22 7 8.9203 -5.9139 14.0965 23 14 8.3765 -3.8473 15.8607 24 1 7.1891 -4.2388 16.6619 25 1 9.6131 -4.2140 16.5967 26 1 8.3552 -2.3809 15.6281 27 6 6.7609 -2.8094 11.0352 28 6 6.2124 -2.1312 9.9659 29 6 3.2870 -0.6758 3.2700 30 6 2.8278 -0.0343 2.1391 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6767 1.9564 0.8898 37 1 1.6766 -1.7490 -1.2492 38 1 1.6766 -0.2075 -2.1393 39 1 3.1299 -0.7218 -1.2490 40 1 1.0742 -2.5562 0.7326 41 1 1.8888 -3.7266 2.7358 42 1 3.1862 -3.7442 4.8646 43 1 4.4826 -1.0208 5.4107 44 1 5.6568 -1.1421 7.5504 45 1 6.2896 -4.6080 7.6594 46 1 7.2574 -5.8195 9.5692 47 1 9.3654 -6.3173 14.8581 48 1 6.8939 -2.3074 11.9822 49 1 5.9161 -1.0984 10.0760 50 1 3.9043 -0.1458 3.9803 51 1 3.0861 0.9996 1.9641 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012850695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:23 Heat of formation + Delta-G solvation = -5.379072 kcal Electronic energy + Delta-G solvation = -29844.779212 eV Core-core repulsion = 25674.721676 eV Total energy + Delta-G solvation = -4170.057536 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.178 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.39186 -40.01155 -38.65911 -37.21721 -36.45837 -33.93195 -33.62788 -32.17259 -31.58533 -30.20854 -29.60702 -27.87974 -27.81194 -27.73949 -25.44903 -24.53238 -22.82674 -22.42368 -22.02537 -20.71777 -19.86152 -19.34490 -18.07509 -17.53103 -17.34087 -16.82561 -16.19655 -15.54690 -15.31652 -14.90573 -14.77201 -14.70851 -14.54747 -14.31952 -14.18790 -14.05708 -13.71388 -13.56730 -13.43090 -13.30418 -12.81649 -12.75474 -12.67665 -12.50344 -12.48088 -12.18529 -12.15679 -11.84195 -11.64992 -11.54963 -11.53376 -11.49250 -11.10959 -11.00296 -10.90607 -10.75149 -10.45538 -10.41302 -9.82808 -9.53595 -9.32215 -9.29923 -8.69664 -8.45186 -8.19647 -6.89999 -6.43670 -4.01483 0.25703 1.05206 1.69913 2.19528 2.30195 3.13009 3.14189 3.19098 3.29383 3.36000 3.59318 3.97823 4.07433 4.20945 4.45297 4.49113 4.53052 4.58462 4.60089 4.76442 4.91378 4.97189 5.01776 5.08858 5.12439 5.12625 5.20100 5.26061 5.32475 5.38151 5.38253 5.44338 5.54621 5.56693 5.61371 5.66200 5.71410 5.78538 5.79919 5.84392 5.94979 6.13360 6.16221 6.22758 6.23955 6.32377 6.35907 6.58514 6.81155 6.86826 7.01031 7.16827 7.23088 7.42009 7.73810 7.79764 8.00819 8.39551 9.01708 9.72410 10.74333 Molecular weight = 365.18amu Principal moments of inertia in cm(-1) A = 0.035531 B = 0.001233 C = 0.001211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.847902 B =22694.733308 C =23117.877968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.119 4.119 7 C -0.093 4.093 8 C -0.076 4.076 9 C -0.026 4.026 10 C -0.203 4.203 11 C 0.536 3.464 12 O -0.531 6.531 13 N -0.655 5.655 14 C 0.036 3.964 15 C -0.067 4.067 16 C -0.177 4.177 17 C 0.146 3.854 18 O -0.177 6.177 19 C -0.391 4.391 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.219 4.219 28 C -0.090 4.090 29 C -0.100 4.100 30 C -0.124 4.124 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.128 0.872 44 H 0.402 0.598 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.270 0.730 48 H 0.131 0.869 49 H 0.111 0.889 50 H 0.127 0.873 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 15.276 -28.975 35.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.136 4.136 7 C -0.111 4.111 8 C -0.076 4.076 9 C -0.046 4.046 10 C -0.224 4.224 11 C 0.326 3.674 12 O -0.410 6.410 13 N -0.298 5.298 14 C -0.056 4.056 15 C -0.087 4.087 16 C -0.197 4.197 17 C 0.092 3.908 18 O -0.080 6.080 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.239 4.239 28 C -0.110 4.110 29 C -0.117 4.117 30 C -0.141 4.141 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.237 0.763 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.080 0.920 48 H 0.149 0.851 49 H 0.129 0.871 50 H 0.145 0.855 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.376 14.062 -28.678 35.026 hybrid contribution 0.125 1.060 0.866 1.374 sum -14.251 15.122 -27.811 34.717 Atomic orbital electron populations 1.21901 0.93526 1.02191 1.02025 1.19545 0.95821 0.95131 0.92698 1.21979 1.01294 0.94894 1.02097 1.21901 1.01361 1.00254 0.96130 1.19972 0.96707 0.93965 0.95572 1.20912 1.00706 0.94311 0.97714 1.21372 0.96290 0.99897 0.93538 1.19045 0.99394 0.93976 0.95148 1.22365 0.92036 0.99689 0.90525 1.22916 1.02841 1.00890 0.95771 1.18344 0.78509 0.86976 0.83569 1.90834 1.57177 1.16745 1.76216 1.43112 1.48859 1.12569 1.25278 1.17238 1.07067 0.93837 0.87488 1.20605 0.96549 0.93017 0.98481 1.20124 1.07701 1.00434 0.91463 1.19426 0.92122 0.90480 0.88726 1.83998 1.68375 1.40248 1.15369 1.21307 1.36609 1.04520 0.84300 0.89115 1.25285 0.95728 0.96245 0.99265 1.70052 1.33052 1.14945 1.31613 0.85716 0.78191 0.79173 0.80364 1.19884 1.20265 1.19223 1.20977 1.08027 0.95157 0.99697 1.20483 1.00532 0.99006 0.91028 1.21438 0.99091 0.93837 0.97379 1.21123 0.98446 1.00387 0.94191 0.92398 0.92242 0.92340 0.92149 0.92274 0.92155 0.92342 0.92243 0.92385 0.85879 0.85421 0.84557 0.85417 0.76343 0.85789 0.86098 0.92020 0.85094 0.87140 0.85486 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.29 37.16 0.31 -0.34 16 2 C -0.03 -0.16 0.85 -155.66 -0.13 -0.30 16 3 C -0.15 -0.64 7.13 37.16 0.26 -0.37 16 4 C -0.14 -0.65 8.29 37.16 0.31 -0.34 16 5 C -0.06 -0.42 4.77 -104.50 -0.50 -0.92 16 6 C -0.12 -0.83 8.68 -39.65 -0.34 -1.17 16 7 C -0.09 -0.74 9.80 -39.11 -0.38 -1.12 16 8 C -0.08 -0.67 5.87 -105.06 -0.62 -1.28 16 9 C -0.03 -0.27 9.46 -37.15 -0.35 -0.62 16 10 C -0.20 -2.13 9.41 -37.51 -0.35 -2.48 16 11 C 0.54 7.86 7.47 -12.98 -0.10 7.76 16 12 O -0.53 -9.94 13.93 5.18 0.07 -9.86 16 13 N -0.65 -9.23 5.33 -11.09 -0.06 -9.29 16 14 C 0.04 0.66 6.27 -83.66 -0.52 0.13 16 15 C -0.07 -1.34 8.64 -39.41 -0.34 -1.69 16 16 C -0.18 -3.98 9.98 -39.42 -0.39 -4.37 16 17 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 18 O -0.18 -5.10 9.75 0.05 0.00 -5.10 16 19 C -0.39 -10.97 9.44 30.88 0.29 -10.68 16 20 H 0.09 2.34 5.29 -52.48 -0.28 2.06 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 23 Si 0.94 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 C -0.22 -4.76 9.12 -39.42 -0.36 -5.12 16 28 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 29 C -0.10 -0.77 9.41 -39.11 -0.37 -1.14 16 30 C -0.12 -0.86 8.95 -39.65 -0.36 -1.21 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.27 7.37 -51.93 -0.38 -0.12 16 34 H 0.06 0.26 7.51 -51.93 -0.39 -0.13 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.06 0.26 7.50 -51.94 -0.39 -0.13 16 37 H 0.06 0.27 7.37 -51.93 -0.38 -0.12 16 38 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.12 0.66 7.07 -52.48 -0.37 0.29 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.49 7.52 -52.49 -0.39 1.10 16 43 H 0.13 0.94 6.07 -52.49 -0.32 0.62 16 44 H 0.40 4.08 8.80 -40.82 -0.36 3.72 16 45 H 0.12 2.44 6.43 -52.49 -0.34 2.10 16 46 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 47 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 49 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 50 H 0.13 0.78 6.17 -52.48 -0.32 0.46 16 51 H 0.13 0.68 5.87 -52.49 -0.31 0.37 16 LS Contribution 419.39 15.07 6.32 6.32 Total: -1.00 -33.82 419.39 -9.68 -43.50 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.05 Total: 6.54 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -4.70 Total: -22.96 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.70 Total: -33.94 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.07 Total: -14.96 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.82 -9.68 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012850695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.124 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds