Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47331 * 269.99727 * 3 2 1 5 5 H 1.48502 * 109.46870 * 30.00053 * 3 2 1 6 6 H 1.48500 * 109.47069 * 149.99650 * 3 2 1 7 7 C 1.37879 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99488 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00301 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00275 * 275.00193 * 10 9 7 12 12 C 1.50699 * 109.46913 * 274.99930 * 11 10 9 13 13 C 1.34516 * 125.78934 * 89.72067 * 12 11 10 14 14 C 1.41385 * 106.84244 * 179.88608 * 13 12 11 15 15 C 1.34518 * 106.83611 * 0.37082 * 14 13 12 16 16 O 1.34299 * 108.42412 * 359.77072 * 15 14 13 17 17 S 1.65603 * 119.99820 * 95.00362 * 10 9 7 18 18 O 1.42101 * 106.40230 * 336.45682 * 17 10 9 19 19 O 1.42097 * 106.40312 * 203.54084 * 17 10 9 20 20 C 1.76195 * 107.22020 * 89.99970 * 17 10 9 21 21 C 1.38395 * 119.92607 * 270.29446 * 20 17 10 22 22 C 1.38342 * 120.30516 * 180.25563 * 21 20 17 23 23 C 1.37974 * 120.14875 * 359.44610 * 22 21 20 24 24 C 1.39608 * 119.84372 * 0.27850 * 23 22 21 25 25 C 1.47731 * 120.14574 * 179.97438 * 24 23 22 26 26 O 1.21470 * 119.99879 * 179.97438 * 25 24 23 27 27 O 1.34713 * 119.99818 * 359.97438 * 25 24 23 28 28 C 1.37925 * 119.92609 * 89.99971 * 20 17 10 29 29 H 0.97004 * 119.99860 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47067 * 60.00195 * 9 7 2 31 31 H 1.08994 * 109.47254 * 300.00126 * 9 7 2 32 32 H 1.08996 * 109.46923 * 34.99783 * 11 10 9 33 33 H 1.09000 * 109.47387 * 155.00185 * 11 10 9 34 34 H 1.08001 * 126.57990 * 0.02562 * 13 12 11 35 35 H 1.07991 * 126.57992 * 180.15938 * 14 13 12 36 36 H 1.08002 * 125.78560 * 179.75519 * 15 14 13 37 37 H 1.08000 * 119.84625 * 359.97438 * 21 20 17 38 38 H 1.08002 * 119.92904 * 179.72812 * 22 21 20 39 39 H 1.07999 * 120.07593 * 180.25535 * 23 22 21 40 40 H 0.96703 * 116.99394 * 179.97438 * 27 25 24 41 41 H 1.07997 * 120.07375 * 0.04568 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7631 -4.0976 -1.2633 12 6 1.8178 -5.0951 -1.8817 13 6 0.8173 -4.8073 -2.7336 14 6 0.1935 -6.0329 -3.0618 15 6 0.8449 -6.9954 -2.3844 16 8 1.8277 -6.4216 -1.6714 17 16 2.6459 -4.3233 1.4293 18 8 2.4208 -3.3558 2.4454 19 8 3.9102 -4.9303 1.2005 20 6 1.5111 -5.6366 1.7325 21 6 0.3487 -5.3943 2.4435 22 6 -0.5452 -6.4208 2.6906 23 6 -0.2884 -7.6918 2.2192 24 6 0.8795 -7.9420 1.4964 25 6 1.1613 -9.3005 0.9891 26 8 2.1781 -9.5151 0.3601 27 8 0.2907 -10.3013 1.2241 28 6 1.7803 -6.9024 1.2555 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.9024 -3.2583 -1.9447 33 1 3.7241 -4.5762 -1.0750 34 1 0.5445 -3.8282 -3.0988 35 1 -0.6470 -6.1697 -3.7260 36 1 0.6161 -8.0506 -2.4095 37 1 0.1408 -4.4002 2.8109 38 1 -1.4483 -6.2258 3.2499 39 1 -0.9891 -8.4914 2.4093 40 1 0.5182 -11.1727 0.8718 41 1 2.6857 -7.0893 0.6974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012880322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = -109.799686 kcal Electronic energy + Delta-G solvation = -31778.891654 eV Core-core repulsion = 27332.250768 eV Total energy + Delta-G solvation = -4446.640886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.086 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.26243 -40.58118 -38.76991 -36.79570 -36.30636 -36.04325 -35.32378 -32.79643 -32.55721 -31.73559 -31.33891 -30.10296 -27.26482 -25.05988 -24.97310 -23.34509 -22.48177 -21.53121 -21.41690 -20.30291 -19.12923 -18.10211 -17.88964 -17.32157 -16.86974 -16.36911 -16.19265 -16.01021 -15.83251 -15.74999 -15.54657 -14.97496 -14.42805 -14.37793 -14.13413 -13.64193 -13.55652 -13.13734 -12.93450 -12.59395 -12.54713 -12.35627 -12.31117 -11.98193 -11.85545 -11.80844 -11.69937 -11.51060 -11.28411 -11.14404 -10.89668 -10.74957 -10.67804 -10.54174 -10.10011 -9.92358 -9.65095 -9.56425 -9.25524 -8.50852 -8.37406 -8.22084 -6.12635 -4.17145 0.38750 0.75655 0.97134 1.96095 2.27477 2.73380 2.86500 3.22508 3.29003 3.35801 3.36153 3.41705 3.67801 4.20211 4.40218 4.52386 4.66072 4.76423 4.84271 4.95650 5.08480 5.19305 5.24173 5.29678 5.34364 5.46581 5.50312 5.64420 5.90821 5.95173 5.98770 6.04233 6.05096 6.12094 6.20285 6.27328 6.38105 6.55563 6.76645 7.09861 7.23028 7.41974 7.43397 7.64178 7.84252 8.10530 8.85275 9.48712 10.95917 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003925 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.390639 B = 7131.908615 C = 7954.559345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.532 4.532 8 H 0.064 0.936 9 C 0.254 3.746 10 N -0.973 5.973 11 C 0.199 3.801 12 C -0.033 4.033 13 C -0.187 4.187 14 C -0.214 4.214 15 C -0.047 4.047 16 O -0.173 6.173 17 S 2.683 3.317 18 O -0.933 6.933 19 O -0.967 6.967 20 C -0.687 4.687 21 C 0.023 3.977 22 C -0.156 4.156 23 C -0.016 4.016 24 C -0.157 4.157 25 C 0.528 3.472 26 O -0.505 6.505 27 O -0.514 6.514 28 C 0.056 3.944 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.191 0.809 37 H 0.151 0.849 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.414 0.586 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 -17.469 -0.302 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.133 3.867 10 N -0.811 5.811 11 C 0.072 3.928 12 C -0.085 4.085 13 C -0.207 4.207 14 C -0.233 4.233 15 C -0.115 4.115 16 O -0.069 6.069 17 S 2.770 3.230 18 O -0.923 6.923 19 O -0.958 6.958 20 C -0.770 4.770 21 C 0.004 3.996 22 C -0.174 4.174 23 C -0.034 4.034 24 C -0.158 4.158 25 C 0.372 3.628 26 O -0.394 6.394 27 O -0.327 6.327 28 C 0.037 3.963 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.208 0.792 37 H 0.169 0.831 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.272 0.728 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.435 -16.922 0.433 17.102 hybrid contribution -0.592 -0.190 -0.626 0.882 sum -3.027 -17.112 -0.193 17.379 Atomic orbital electron populations 1.69916 1.06002 1.27213 1.50122 1.24905 0.94870 0.99238 0.94745 0.86515 0.80071 0.82910 0.78100 1.20594 1.21092 1.19585 1.21457 0.93748 0.90341 1.51545 0.91819 1.19197 0.86978 0.81635 0.98900 1.57627 1.60165 1.44638 1.18660 1.19723 0.92667 0.93564 0.86819 1.23403 1.01931 0.81547 1.01626 1.21696 0.97479 0.99563 1.02006 1.21804 1.03655 0.92783 1.05102 1.23836 0.91424 0.98800 0.97454 1.84054 1.46226 1.20401 1.56216 1.02449 0.73726 0.72976 0.73813 1.93623 1.85545 1.57368 1.55814 1.93527 1.38058 1.78508 1.85670 1.31578 1.16707 1.15750 1.13014 1.21368 0.89500 1.00436 0.88321 1.21311 1.00847 0.92642 1.02613 1.21697 0.94033 0.97399 0.90286 1.19045 0.98982 0.90697 1.07122 1.20804 0.80311 0.85190 0.76464 1.90925 1.26779 1.83775 1.37892 1.84546 1.51173 1.22180 1.74761 1.20991 0.96681 0.89456 0.89181 0.92619 0.94045 0.94180 0.85823 0.88237 0.83107 0.83913 0.79206 0.83140 0.84113 0.84002 0.72760 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -13.91 9.38 -34.44 -0.32 -14.23 16 8 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 9 C 0.25 5.90 5.10 -5.20 -0.03 5.87 16 10 N -0.97 -19.14 2.75 -116.96 -0.32 -19.46 16 11 C 0.20 3.37 6.21 -5.20 -0.03 3.34 16 12 C -0.03 -0.54 6.90 -35.62 -0.25 -0.78 16 13 C -0.19 -2.92 10.81 -39.70 -0.43 -3.35 16 14 C -0.21 -2.92 10.91 -39.70 -0.43 -3.36 16 15 C -0.05 -0.63 12.09 29.42 0.36 -0.27 16 16 O -0.17 -2.73 9.16 5.71 0.05 -2.68 16 17 S 2.68 52.22 5.64 -107.50 -0.61 51.62 16 18 O -0.93 -20.91 16.25 -57.17 -0.93 -21.84 16 19 O -0.97 -19.57 15.83 -57.17 -0.90 -20.47 16 20 C -0.69 -11.28 5.97 -39.64 -0.24 -11.52 16 21 C 0.02 0.33 9.52 -39.49 -0.38 -0.04 16 22 C -0.16 -1.78 10.03 -39.64 -0.40 -2.18 16 23 C -0.02 -0.17 9.62 -39.17 -0.38 -0.55 16 24 C -0.16 -2.07 5.87 -104.98 -0.62 -2.69 16 25 C 0.53 6.41 8.27 34.61 0.29 6.70 16 26 O -0.51 -7.50 17.13 -19.24 -0.33 -7.83 16 27 O -0.51 -4.18 12.68 -40.53 -0.51 -4.70 16 28 C 0.06 0.87 7.89 -39.17 -0.31 0.57 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 31 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 32 H 0.12 1.98 8.11 -51.93 -0.42 1.56 16 33 H 0.10 1.58 6.91 -51.93 -0.36 1.22 16 34 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.15 2.16 7.61 -52.49 -0.40 1.76 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.14 1.15 7.61 -52.49 -0.40 0.75 16 40 H 0.41 1.46 9.11 45.56 0.42 1.88 16 41 H 0.15 2.49 6.93 -52.49 -0.36 2.13 16 LS Contribution 377.97 15.07 5.70 5.70 Total: -1.00 -34.14 377.97 -8.98 -43.12 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.58 Total: 5.58 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.26 Total: -20.85 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.41 Total: -43.49 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -2.63 Total: -57.52 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.61 Total: 51.62 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.14 -8.98 -43.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012880322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.681 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds