Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47331 * 269.99727 * 3 2 1 5 5 H 1.48502 * 109.46870 * 30.00053 * 3 2 1 6 6 H 1.48500 * 109.47069 * 149.99650 * 3 2 1 7 7 C 1.37879 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99488 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00301 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47190 * 179.97438 * 9 7 2 11 11 C 1.46498 * 120.00275 * 275.00193 * 10 9 7 12 12 C 1.50699 * 109.46913 * 274.99930 * 11 10 9 13 13 C 1.34516 * 125.78934 * 89.72067 * 12 11 10 14 14 C 1.41385 * 106.84244 * 179.88608 * 13 12 11 15 15 C 1.34518 * 106.83611 * 0.37082 * 14 13 12 16 16 O 1.34299 * 108.42412 * 359.77072 * 15 14 13 17 17 S 1.65603 * 119.99820 * 95.00362 * 10 9 7 18 18 O 1.42101 * 106.40230 * 336.45682 * 17 10 9 19 19 O 1.42097 * 106.40312 * 203.54084 * 17 10 9 20 20 C 1.76195 * 107.22020 * 89.99970 * 17 10 9 21 21 C 1.38395 * 119.92607 * 270.29446 * 20 17 10 22 22 C 1.38342 * 120.30516 * 180.25563 * 21 20 17 23 23 C 1.37974 * 120.14875 * 359.44610 * 22 21 20 24 24 C 1.39608 * 119.84372 * 0.27850 * 23 22 21 25 25 C 1.47731 * 120.14574 * 179.97438 * 24 23 22 26 26 O 1.21470 * 119.99879 * 179.97438 * 25 24 23 27 27 O 1.34713 * 119.99818 * 359.97438 * 25 24 23 28 28 C 1.37925 * 119.92609 * 89.99971 * 20 17 10 29 29 H 0.97004 * 119.99860 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47067 * 60.00195 * 9 7 2 31 31 H 1.08994 * 109.47254 * 300.00126 * 9 7 2 32 32 H 1.08996 * 109.46923 * 34.99783 * 11 10 9 33 33 H 1.09000 * 109.47387 * 155.00185 * 11 10 9 34 34 H 1.08001 * 126.57990 * 0.02562 * 13 12 11 35 35 H 1.07991 * 126.57992 * 180.15938 * 14 13 12 36 36 H 1.08002 * 125.78560 * 179.75519 * 15 14 13 37 37 H 1.08000 * 119.84625 * 359.97438 * 21 20 17 38 38 H 1.08002 * 119.92904 * 179.72812 * 22 21 20 39 39 H 1.07999 * 120.07593 * 180.25535 * 23 22 21 40 40 H 0.96703 * 116.99394 * 179.97438 * 27 25 24 41 41 H 1.07997 * 120.07375 * 0.04568 * 28 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.7631 -4.0976 -1.2633 12 6 1.8178 -5.0951 -1.8817 13 6 0.8173 -4.8073 -2.7336 14 6 0.1935 -6.0329 -3.0618 15 6 0.8449 -6.9954 -2.3844 16 8 1.8277 -6.4216 -1.6714 17 16 2.6459 -4.3233 1.4293 18 8 2.4208 -3.3558 2.4454 19 8 3.9102 -4.9303 1.2005 20 6 1.5111 -5.6366 1.7325 21 6 0.3487 -5.3943 2.4435 22 6 -0.5452 -6.4208 2.6906 23 6 -0.2884 -7.6918 2.2192 24 6 0.8795 -7.9420 1.4964 25 6 1.1613 -9.3005 0.9891 26 8 2.1781 -9.5151 0.3601 27 8 0.2907 -10.3013 1.2241 28 6 1.7803 -6.9024 1.2555 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.9024 -3.2583 -1.9447 33 1 3.7241 -4.5762 -1.0750 34 1 0.5445 -3.8282 -3.0988 35 1 -0.6470 -6.1697 -3.7260 36 1 0.6161 -8.0506 -2.4095 37 1 0.1408 -4.4002 2.8109 38 1 -1.4483 -6.2258 3.2499 39 1 -0.9891 -8.4914 2.4093 40 1 0.5182 -11.1727 0.8718 41 1 2.6857 -7.0893 0.6974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012880322.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -133.390950 kcal Electronic energy + Delta-G solvation = -31779.914648 eV Core-core repulsion = 27332.250768 eV Total energy + Delta-G solvation = -4447.663880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.086 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.42604 -41.50843 -39.77002 -38.40901 -37.64018 -37.12940 -36.96101 -34.66557 -33.81840 -32.79984 -32.38869 -31.51188 -28.98406 -26.56028 -25.97328 -24.52102 -24.21684 -22.59500 -22.48527 -21.50165 -20.32839 -19.45248 -18.88981 -18.73700 -18.44938 -17.97240 -17.45089 -17.20510 -17.03969 -16.80605 -16.71206 -16.46719 -15.98096 -15.61277 -15.23635 -15.11491 -14.55148 -14.47129 -14.33483 -14.04698 -13.70577 -13.64534 -13.55412 -13.45046 -13.28698 -13.20642 -13.09431 -12.92587 -12.83012 -12.62864 -12.43054 -12.40019 -12.10000 -11.90223 -11.81966 -11.69538 -10.79852 -10.67097 -10.55149 -10.29914 -10.03138 -9.42173 -8.17428 -6.28096 -0.75408 -0.56262 -0.19612 0.78439 1.31614 1.43134 1.45515 1.55564 1.69863 1.90278 2.02528 2.15444 2.43978 2.45249 2.73851 3.14659 3.23809 3.64911 3.75487 3.76860 3.85544 3.92363 4.02647 4.18906 4.20718 4.29431 4.50282 4.55803 4.66205 4.72232 4.87898 4.93716 4.96434 5.07182 5.08618 5.20225 5.23230 5.39497 5.49909 5.56287 5.63255 5.65455 5.83125 6.11146 6.26361 6.79400 6.91236 7.40616 8.90490 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.003925 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.390639 B = 7131.908615 C = 7954.559345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.272 3.728 10 N -0.977 5.977 11 C 0.195 3.805 12 C -0.050 4.050 13 C -0.195 4.195 14 C -0.218 4.218 15 C -0.040 4.040 16 O -0.185 6.185 17 S 2.686 3.314 18 O -0.974 6.974 19 O -0.985 6.985 20 C -0.693 4.693 21 C 0.003 3.997 22 C -0.142 4.142 23 C 0.005 3.995 24 C -0.162 4.162 25 C 0.539 3.461 26 O -0.538 6.538 27 O -0.496 6.496 28 C 0.042 3.958 29 H 0.267 0.733 30 H 0.035 0.965 31 H 0.022 0.978 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.225 0.775 37 H 0.143 0.857 38 H 0.181 0.819 39 H 0.185 0.815 40 H 0.437 0.563 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -19.893 -0.339 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.181 4.181 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.150 3.850 10 N -0.815 5.815 11 C 0.069 3.931 12 C -0.102 4.102 13 C -0.216 4.216 14 C -0.237 4.237 15 C -0.108 4.108 16 O -0.081 6.081 17 S 2.779 3.221 18 O -0.965 6.965 19 O -0.975 6.975 20 C -0.782 4.782 21 C -0.017 4.017 22 C -0.160 4.160 23 C -0.013 4.013 24 C -0.164 4.164 25 C 0.383 3.617 26 O -0.430 6.430 27 O -0.310 6.310 28 C 0.022 3.978 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.164 0.836 35 H 0.187 0.813 36 H 0.241 0.759 37 H 0.161 0.839 38 H 0.198 0.802 39 H 0.202 0.798 40 H 0.299 0.701 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.368 -19.336 0.370 19.827 hybrid contribution -0.076 0.343 -0.592 0.689 sum -4.444 -18.993 -0.223 19.507 Atomic orbital electron populations 1.70000 1.07089 1.28033 1.50938 1.25635 0.95683 1.02262 0.94523 0.85642 0.78671 0.79325 0.78610 1.19271 1.20630 1.19866 1.21798 0.93738 0.91928 1.51239 0.92456 1.18737 0.86936 0.81830 0.97542 1.57441 1.59717 1.44513 1.19779 1.19789 0.93211 0.94157 0.85907 1.23103 1.02538 0.81909 1.02624 1.21856 0.97489 1.00378 1.01830 1.22083 1.04351 0.91653 1.05570 1.24544 0.90036 1.00193 0.96006 1.84054 1.47191 1.20041 1.56831 1.01840 0.73949 0.73190 0.73092 1.93562 1.86270 1.59530 1.57089 1.93490 1.39679 1.78628 1.85744 1.30835 1.17112 1.14674 1.15589 1.21513 0.89801 1.01452 0.88891 1.21733 1.00970 0.91757 1.01552 1.22164 0.93241 0.98128 0.87724 1.19222 0.99144 0.90865 1.07173 1.20534 0.80061 0.85416 0.75651 1.90927 1.28311 1.84301 1.39450 1.84477 1.49525 1.22841 1.74157 1.20867 0.97100 0.89908 0.89876 0.92413 0.94716 0.95972 0.85595 0.87730 0.83587 0.81304 0.75891 0.83907 0.80215 0.79824 0.70051 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.98 13.29 21.45 0.28 -51.69 16 2 C 0.02 1.03 5.46 84.66 0.46 1.50 16 3 Si 0.95 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -29.69 9.38 25.60 0.24 -29.45 16 8 H 0.06 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 13.25 5.10 85.63 0.44 13.69 16 10 N -0.98 -40.53 2.75 -523.95 -1.44 -41.97 16 11 C 0.19 6.96 6.21 85.63 0.53 7.49 16 12 C -0.05 -1.66 6.90 24.83 0.17 -1.49 16 13 C -0.20 -6.10 10.81 22.19 0.24 -5.86 16 14 C -0.22 -5.55 10.91 22.19 0.24 -5.30 16 15 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 16 O -0.18 -5.78 9.16 -2.47 -0.02 -5.80 16 17 S 2.69 110.52 5.64 -56.49 -0.32 110.20 16 18 O -0.97 -46.36 16.25 -128.00 -2.08 -48.44 16 19 O -0.98 -42.15 15.83 -128.00 -2.03 -44.17 16 20 C -0.69 -23.22 5.97 22.23 0.13 -23.09 16 21 C 0.00 0.08 9.52 22.33 0.21 0.29 16 22 C -0.14 -2.78 10.03 22.23 0.22 -2.56 16 23 C 0.01 0.09 9.62 22.54 0.22 0.31 16 24 C -0.16 -3.88 5.87 -20.10 -0.12 -4.00 16 25 C 0.54 11.47 8.27 70.33 0.58 12.05 16 26 O -0.54 -15.11 17.13 19.93 0.34 -14.77 16 27 O -0.50 -5.77 12.68 -56.23 -0.71 -6.49 16 28 C 0.04 1.30 7.89 22.54 0.18 1.48 16 29 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.03 1.72 8.11 -2.39 -0.02 1.70 16 31 H 0.02 1.15 7.61 -2.39 -0.02 1.14 16 32 H 0.13 4.29 8.11 -2.39 -0.02 4.27 16 33 H 0.10 3.54 6.91 -2.39 -0.02 3.52 16 34 H 0.15 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.17 3.31 8.06 -2.92 -0.02 3.29 16 36 H 0.22 3.80 8.06 -2.91 -0.02 3.78 16 37 H 0.14 4.24 7.61 -2.91 -0.02 4.22 16 38 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.18 1.78 7.61 -2.91 -0.02 1.75 16 40 H 0.44 1.10 9.11 -74.05 -0.67 0.43 16 41 H 0.14 4.60 6.93 -2.91 -0.02 4.58 16 Total: -1.00 -76.45 377.97 1.03 -75.42 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.42 Total: 17.47 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.56 Total: -35.12 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -1.16 Total: -93.66 kcal Atomic # 8 Polarization: -115.17 SS G_CDS: -4.50 Total: -119.67 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 110.52 SS G_CDS: -0.32 Total: 110.20 kcal Total: -76.45 1.03 -75.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012880322.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.974 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds