Wall clock time and date at job start Tue Mar 31 2020 07:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47084 * 2 1 4 4 N 1.46499 * 109.46703 * 120.00011 * 2 1 3 5 5 S 1.65596 * 119.99927 * 263.11918 * 4 2 1 6 6 O 1.42097 * 106.40340 * 49.90969 * 5 4 2 7 7 O 1.42102 * 106.40654 * 182.83247 * 5 4 2 8 8 N 1.65604 * 107.21695 * 296.37055 * 5 4 2 9 9 C 1.46500 * 120.00290 * 95.72733 * 8 5 4 10 10 C 1.46503 * 119.99922 * 275.72337 * 8 5 4 11 11 C 1.50704 * 109.46865 * 95.38684 * 10 8 5 12 12 H 1.08003 * 119.99680 * 5.01054 * 11 10 8 13 13 C 1.37874 * 120.00124 * 185.00852 * 11 10 8 14 14 N 1.31510 * 120.00409 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99872 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47075 * 89.99867 * 15 13 11 17 17 H 1.48503 * 109.47219 * 209.99892 * 15 13 11 18 18 H 1.48502 * 109.47093 * 329.99686 * 15 13 11 19 19 C 1.50697 * 109.47009 * 239.99738 * 2 1 3 20 20 C 1.38247 * 119.99237 * 264.72813 * 19 2 1 21 21 C 1.38201 * 120.02458 * 179.72748 * 20 19 2 22 22 C 1.38387 * 120.00942 * 0.54559 * 21 20 19 23 23 Cl 1.73604 * 120.00544 * 179.74804 * 22 21 20 24 24 C 1.38304 * 119.99153 * 359.72879 * 22 21 20 25 25 C 1.38335 * 119.99383 * 85.00046 * 19 2 1 26 26 Cl 1.73600 * 120.00466 * 359.97438 * 25 19 2 27 27 H 1.08994 * 109.47496 * 184.98028 * 1 2 3 28 28 H 1.08999 * 109.47011 * 304.98349 * 1 2 3 29 29 H 1.09003 * 109.46761 * 64.97968 * 1 2 3 30 30 H 0.96997 * 119.99871 * 82.84729 * 4 2 1 31 31 H 1.09005 * 109.47162 * 89.99811 * 9 8 5 32 32 H 1.08999 * 109.47077 * 209.99990 * 9 8 5 33 33 H 1.09004 * 109.46875 * 329.99956 * 9 8 5 34 34 H 1.09001 * 109.47304 * 215.38592 * 10 8 5 35 35 H 1.09000 * 109.47456 * 335.38734 * 10 8 5 36 36 H 0.96996 * 120.00224 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.98658 * 359.97438 * 20 19 2 38 38 H 1.07989 * 119.99698 * 180.25394 * 21 20 19 39 39 H 1.08000 * 120.01632 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4562 0.1807 2.5345 6 8 1.3824 1.0721 2.8021 7 8 2.9415 -0.7587 3.4840 8 7 3.7493 1.1220 2.1051 9 6 3.5384 2.5104 1.6881 10 6 5.1043 0.5662 2.1423 11 6 5.4808 0.0682 0.7707 12 1 4.8146 0.2294 -0.0640 13 6 6.6757 -0.5930 0.5812 14 7 7.0041 -1.0280 -0.6156 15 14 7.8277 -0.8723 2.0250 16 1 7.5005 -2.1662 2.6763 17 1 9.2309 -0.9032 1.5399 18 1 7.6675 0.2304 3.0066 19 6 2.0324 -0.7105 -1.2304 20 6 2.3664 -2.0504 -1.1667 21 6 2.8218 -2.7040 -2.2961 22 6 2.9543 -2.0146 -3.4886 23 17 3.5326 -2.8342 -4.9056 24 6 2.6257 -0.6727 -3.5516 25 6 2.1644 -0.0203 -2.4220 26 17 1.7509 1.6639 -2.5001 27 1 -0.3634 -1.0237 0.0892 28 1 -0.3633 0.5892 0.8420 29 1 -0.3633 0.4347 -0.9313 30 1 2.0813 -1.6585 1.2056 31 1 3.5857 3.1629 2.5600 32 1 4.3127 2.7978 0.9768 33 1 2.5597 2.6036 1.2172 34 1 5.8061 1.3401 2.4532 35 1 5.1384 -0.2612 2.8512 36 1 7.8446 -1.4935 -0.7488 37 1 2.2677 -2.5877 -0.2350 38 1 3.0787 -3.7518 -2.2468 39 1 2.7285 -0.1343 -4.4822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012946007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:47 Heat of formation + Delta-G solvation = -59.729860 kcal Electronic energy + Delta-G solvation = -27713.016919 eV Core-core repulsion = 23641.397628 eV Total energy + Delta-G solvation = -4071.619291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 366.036 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -39.72435 -36.97029 -36.71378 -36.39964 -35.73667 -35.52875 -35.36818 -32.45531 -30.99248 -30.64364 -28.86625 -28.42053 -25.21256 -23.84035 -22.92464 -21.94805 -20.97814 -19.05842 -17.86118 -17.31869 -16.81885 -16.73936 -16.27964 -15.61447 -15.29872 -14.75698 -14.26267 -14.18414 -14.06069 -13.81334 -13.54042 -13.30617 -13.12114 -12.72921 -12.53920 -12.38905 -12.29213 -11.92620 -11.89971 -11.85098 -11.63070 -11.44906 -11.36298 -11.29445 -11.20580 -10.92162 -10.88016 -10.81540 -10.56806 -10.49468 -10.27257 -9.60182 -9.42626 -8.83598 -8.65414 -8.47759 -8.15049 -6.15786 -4.16435 1.05032 1.18058 1.22192 1.91107 2.36752 3.23592 3.29095 3.33948 3.35967 3.56664 4.01136 4.33915 4.55717 4.69018 4.89327 4.99897 5.12259 5.16071 5.24473 5.30307 5.43594 5.50227 5.58620 5.72903 5.81492 5.95655 5.98719 6.01771 6.15697 6.19652 6.26868 6.40604 6.47895 6.63473 6.79386 7.01506 7.18195 7.38983 7.52697 8.39991 8.88659 9.44531 10.95594 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.008308 B = 0.005352 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.507055 B = 5229.983952 C = 7126.197642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.198 3.802 3 H 0.098 0.902 4 N -1.116 6.116 5 S 2.789 3.211 6 O -0.993 6.993 7 O -0.982 6.982 8 N -0.991 5.991 9 C 0.102 3.898 10 C 0.215 3.785 11 C -0.540 4.540 12 H 0.083 0.917 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.864 3.136 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.265 1.265 19 C -0.063 4.063 20 C -0.073 4.073 21 C -0.093 4.093 22 C -0.020 4.020 23 Cl -0.067 7.067 24 C -0.098 4.098 25 C -0.014 4.014 26 Cl -0.060 7.060 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.412 0.588 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.264 0.736 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.641 0.326 -5.216 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.091 3.909 3 H 0.116 0.884 4 N -0.876 5.876 5 S 2.796 3.204 6 O -0.976 6.976 7 O -0.967 6.967 8 N -0.832 5.832 9 C -0.045 4.045 10 C 0.092 3.908 11 C -0.579 4.579 12 H 0.101 0.899 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.691 3.309 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.066 4.066 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.047 4.047 23 Cl -0.038 7.038 24 C -0.117 4.117 25 C -0.042 4.042 26 Cl -0.031 7.031 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.897 0.498 -4.574 12.756 hybrid contribution 1.330 -0.575 -0.023 1.449 sum -10.567 -0.078 -4.597 11.524 Atomic orbital electron populations 1.22306 0.93757 1.03109 1.03244 1.19517 0.94168 0.95595 0.81667 0.88415 1.56111 1.81834 1.19270 1.30347 1.01683 0.72767 0.72848 0.73116 1.93558 1.54189 1.65725 1.84166 1.93581 1.81030 1.63165 1.58881 1.57382 1.21673 1.21090 1.83079 1.21330 1.01468 0.81847 0.99829 1.19590 0.78151 0.94615 0.98440 1.21411 1.05456 1.37106 0.93898 0.89939 1.24820 0.97460 0.94823 0.95367 1.69891 1.23401 1.37936 1.21174 0.87037 0.80711 0.79679 0.83479 1.19834 1.21100 1.18918 1.19792 0.98964 0.94303 0.93518 1.20718 0.97262 0.93116 0.98043 1.21053 0.98457 1.00883 0.90787 1.20634 1.02287 0.92696 0.89061 1.98365 1.87406 1.78694 1.39321 1.20736 0.99740 0.92798 0.98430 1.20393 1.03562 0.85732 0.94478 1.98362 1.91854 1.14520 1.98391 0.91787 0.90546 0.91343 0.75232 0.93482 0.90425 0.92438 0.94664 0.94169 0.92614 0.84415 0.84432 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.50 37.16 0.35 -1.63 16 2 C 0.20 2.88 2.55 -69.08 -0.18 2.71 16 3 H 0.10 1.49 5.68 -51.93 -0.29 1.19 16 4 N -1.12 -17.56 5.36 -5.88 -0.03 -17.59 16 5 S 2.79 51.96 5.99 -107.50 -0.64 51.31 16 6 O -0.99 -18.80 16.60 -57.17 -0.95 -19.75 16 7 O -0.98 -21.10 16.82 -57.17 -0.96 -22.07 16 8 N -0.99 -19.27 3.23 -123.04 -0.40 -19.67 16 9 C 0.10 1.66 10.13 59.85 0.61 2.27 16 10 C 0.22 4.88 4.49 -5.19 -0.02 4.85 16 11 C -0.54 -13.74 9.93 -34.44 -0.34 -14.08 16 12 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 13 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 14 N -0.89 -25.03 13.96 55.43 0.77 -24.25 16 15 Si 0.86 20.45 27.37 -169.99 -4.65 15.79 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.26 -6.02 6.69 56.52 0.38 -5.65 16 19 C -0.06 -0.94 5.06 -104.58 -0.53 -1.47 16 20 C -0.07 -1.04 9.30 -39.59 -0.37 -1.41 16 21 C -0.09 -1.31 9.83 -39.54 -0.39 -1.70 16 22 C -0.02 -0.28 6.32 -39.50 -0.25 -0.53 16 23 Cl -0.07 -0.88 28.96 -51.86 -1.50 -2.38 16 24 C -0.10 -1.38 9.62 -39.51 -0.38 -1.76 16 25 C -0.01 -0.21 6.31 -39.50 -0.25 -0.46 16 26 Cl -0.06 -0.80 27.20 -51.86 -1.41 -2.21 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.96 7.93 -51.93 -0.41 0.55 16 29 H 0.07 0.74 7.94 -51.93 -0.41 0.33 16 30 H 0.41 5.77 6.62 -34.47 -0.23 5.54 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.06 0.84 6.58 -51.93 -0.34 0.50 16 34 H 0.04 0.79 7.52 -51.93 -0.39 0.40 16 35 H 0.04 0.95 6.14 -51.93 -0.32 0.63 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.14 1.72 6.08 -52.49 -0.32 1.40 16 38 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -30.95 366.21 -10.51 -41.46 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.41 Total: 5.04 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -1.85 Total: -11.20 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.35 Total: -61.52 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.91 Total: -41.81 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.65 Total: 15.79 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.64 Total: 51.31 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -2.91 Total: -4.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.95 -10.51 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012946007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.270 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds