Wall clock time and date at job start Tue Mar 31 2020 07:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47084 * 2 1 4 4 N 1.46499 * 109.46703 * 120.00011 * 2 1 3 5 5 S 1.65596 * 119.99927 * 263.11918 * 4 2 1 6 6 O 1.42097 * 106.40340 * 49.90969 * 5 4 2 7 7 O 1.42102 * 106.40654 * 182.83247 * 5 4 2 8 8 N 1.65604 * 107.21695 * 296.37055 * 5 4 2 9 9 C 1.46500 * 120.00290 * 95.72733 * 8 5 4 10 10 C 1.46503 * 119.99922 * 275.72337 * 8 5 4 11 11 C 1.50704 * 109.46865 * 95.38684 * 10 8 5 12 12 H 1.08003 * 119.99680 * 5.01054 * 11 10 8 13 13 C 1.37874 * 120.00124 * 185.00852 * 11 10 8 14 14 N 1.31510 * 120.00409 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 119.99872 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47075 * 89.99867 * 15 13 11 17 17 H 1.48503 * 109.47219 * 209.99892 * 15 13 11 18 18 H 1.48502 * 109.47093 * 329.99686 * 15 13 11 19 19 C 1.50697 * 109.47009 * 239.99738 * 2 1 3 20 20 C 1.38247 * 119.99237 * 264.72813 * 19 2 1 21 21 C 1.38201 * 120.02458 * 179.72748 * 20 19 2 22 22 C 1.38387 * 120.00942 * 0.54559 * 21 20 19 23 23 Cl 1.73604 * 120.00544 * 179.74804 * 22 21 20 24 24 C 1.38304 * 119.99153 * 359.72879 * 22 21 20 25 25 C 1.38335 * 119.99383 * 85.00046 * 19 2 1 26 26 Cl 1.73600 * 120.00466 * 359.97438 * 25 19 2 27 27 H 1.08994 * 109.47496 * 184.98028 * 1 2 3 28 28 H 1.08999 * 109.47011 * 304.98349 * 1 2 3 29 29 H 1.09003 * 109.46761 * 64.97968 * 1 2 3 30 30 H 0.96997 * 119.99871 * 82.84729 * 4 2 1 31 31 H 1.09005 * 109.47162 * 89.99811 * 9 8 5 32 32 H 1.08999 * 109.47077 * 209.99990 * 9 8 5 33 33 H 1.09004 * 109.46875 * 329.99956 * 9 8 5 34 34 H 1.09001 * 109.47304 * 215.38592 * 10 8 5 35 35 H 1.09000 * 109.47456 * 335.38734 * 10 8 5 36 36 H 0.96996 * 120.00224 * 180.02562 * 14 13 11 37 37 H 1.07999 * 119.98658 * 359.97438 * 20 19 2 38 38 H 1.07989 * 119.99698 * 180.25394 * 21 20 19 39 39 H 1.08000 * 120.01632 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4562 0.1807 2.5345 6 8 1.3824 1.0721 2.8021 7 8 2.9415 -0.7587 3.4840 8 7 3.7493 1.1220 2.1051 9 6 3.5384 2.5104 1.6881 10 6 5.1043 0.5662 2.1423 11 6 5.4808 0.0682 0.7707 12 1 4.8146 0.2294 -0.0640 13 6 6.6757 -0.5930 0.5812 14 7 7.0041 -1.0280 -0.6156 15 14 7.8277 -0.8723 2.0250 16 1 7.5005 -2.1662 2.6763 17 1 9.2309 -0.9032 1.5399 18 1 7.6675 0.2304 3.0066 19 6 2.0324 -0.7105 -1.2304 20 6 2.3664 -2.0504 -1.1667 21 6 2.8218 -2.7040 -2.2961 22 6 2.9543 -2.0146 -3.4886 23 17 3.5326 -2.8342 -4.9056 24 6 2.6257 -0.6727 -3.5516 25 6 2.1644 -0.0203 -2.4220 26 17 1.7509 1.6639 -2.5001 27 1 -0.3634 -1.0237 0.0892 28 1 -0.3633 0.5892 0.8420 29 1 -0.3633 0.4347 -0.9313 30 1 2.0813 -1.6585 1.2056 31 1 3.5857 3.1629 2.5600 32 1 4.3127 2.7978 0.9768 33 1 2.5597 2.6036 1.2172 34 1 5.8061 1.3401 2.4532 35 1 5.1384 -0.2612 2.8512 36 1 7.8446 -1.4935 -0.7488 37 1 2.2677 -2.5877 -0.2350 38 1 3.0787 -3.7518 -2.2468 39 1 2.7285 -0.1343 -4.4822 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012946007.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:47 Heat of formation + Delta-G solvation = -79.479769 kcal Electronic energy + Delta-G solvation = -27713.873339 eV Core-core repulsion = 23641.397628 eV Total energy + Delta-G solvation = -4072.475712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 366.036 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82771 -38.38956 -37.91976 -37.51867 -37.28023 -36.92350 -36.72278 -34.42389 -32.12588 -31.79501 -30.23192 -29.89395 -26.76634 -24.93047 -24.05859 -23.73784 -22.12110 -20.46531 -19.27272 -18.89284 -18.44492 -18.22836 -17.53609 -16.87818 -16.69064 -16.18220 -15.77945 -15.38919 -15.31037 -15.15390 -14.68661 -14.60264 -14.51887 -14.32702 -14.05153 -13.68399 -13.49106 -13.38267 -13.19587 -13.13652 -13.08703 -12.98381 -12.91064 -12.60567 -12.46382 -12.30093 -12.20210 -12.03033 -12.00100 -11.94535 -11.67167 -11.58416 -10.73319 -10.65341 -9.93762 -9.77317 -9.56475 -8.20337 -6.23135 -0.32912 -0.02800 0.11533 0.81956 1.27011 1.37624 1.42494 1.48187 1.88843 2.38295 2.44361 2.56786 3.13654 3.37466 3.44925 3.66787 3.88261 3.95800 4.06270 4.17940 4.24026 4.41427 4.44875 4.65360 4.67519 4.75294 4.80036 4.92729 4.95200 4.99744 5.04352 5.11805 5.29481 5.30841 5.40038 5.51695 5.55044 5.72818 6.07964 6.38097 6.82768 7.40081 8.92929 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.008308 B = 0.005352 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.507055 B = 5229.983952 C = 7126.197642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.195 3.805 3 H 0.090 0.910 4 N -1.111 6.111 5 S 2.801 3.199 6 O -0.995 6.995 7 O -1.012 7.012 8 N -0.997 5.997 9 C 0.093 3.907 10 C 0.221 3.779 11 C -0.527 4.527 12 H 0.060 0.940 13 C 0.031 3.969 14 N -0.924 5.924 15 Si 0.911 3.089 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.248 1.248 19 C -0.073 4.073 20 C -0.084 4.084 21 C -0.101 4.101 22 C -0.031 4.031 23 Cl -0.059 7.059 24 C -0.104 4.104 25 C -0.025 4.025 26 Cl -0.052 7.052 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.420 0.580 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 0.704 -4.713 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.088 3.912 3 H 0.108 0.892 4 N -0.873 5.873 5 S 2.808 3.192 6 O -0.978 6.978 7 O -0.996 6.996 8 N -0.838 5.838 9 C -0.052 4.052 10 C 0.096 3.904 11 C -0.566 4.566 12 H 0.078 0.922 13 C -0.169 4.169 14 N -0.564 5.564 15 Si 0.736 3.264 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.172 1.172 19 C -0.076 4.076 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.058 4.058 23 Cl -0.030 7.030 24 C -0.124 4.124 25 C -0.053 4.053 26 Cl -0.022 7.022 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.257 0.743 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.486 0.899 -4.060 13.161 hybrid contribution 1.436 -0.660 -0.262 1.602 sum -11.050 0.239 -4.322 11.867 Atomic orbital electron populations 1.22277 0.91717 1.04174 1.03742 1.19666 0.95718 0.94926 0.80912 0.89191 1.55891 1.81565 1.19666 1.30186 1.01196 0.72449 0.72426 0.73091 1.93552 1.53911 1.65889 1.84464 1.93539 1.81528 1.63999 1.60530 1.57356 1.20562 1.22497 1.83419 1.21559 1.02288 0.80564 1.00830 1.19356 0.79966 0.94668 0.96389 1.21544 1.04587 1.35952 0.94564 0.92172 1.25459 0.99066 0.95094 0.97245 1.70005 1.23976 1.39467 1.22952 0.86268 0.78936 0.79944 0.81251 1.19909 1.21096 1.17206 1.19900 0.99345 0.94627 0.93684 1.20969 0.97289 0.93263 0.98768 1.21309 0.98217 1.01744 0.90724 1.20804 1.02411 0.93005 0.89547 1.98363 1.87306 1.78520 1.38833 1.20948 0.99493 0.92967 0.98958 1.20530 1.03785 0.86309 0.94637 1.98358 1.91762 1.13746 1.98379 0.90345 0.90900 0.90083 0.74295 0.91482 0.90773 0.90809 0.93899 0.94863 0.92789 0.83082 0.82984 0.82844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.50 71.98 0.68 -2.88 16 2 C 0.20 5.42 2.55 44.25 0.11 5.53 16 3 H 0.09 2.64 5.68 -2.39 -0.01 2.62 16 4 N -1.11 -33.69 5.36 -172.52 -0.92 -34.61 16 5 S 2.80 100.76 5.99 -56.49 -0.34 100.42 16 6 O -0.99 -35.90 16.60 -128.00 -2.12 -38.02 16 7 O -1.01 -42.49 16.82 -128.00 -2.15 -44.64 16 8 N -1.00 -37.42 3.23 -543.20 -1.75 -39.17 16 9 C 0.09 2.87 10.13 127.77 1.29 4.16 16 10 C 0.22 9.71 4.49 85.63 0.38 10.09 16 11 C -0.53 -26.58 9.93 25.60 0.25 -26.33 16 12 H 0.06 3.27 8.06 -2.91 -0.02 3.24 16 13 C 0.03 1.66 5.47 84.65 0.46 2.13 16 14 N -0.92 -52.43 13.96 21.45 0.30 -52.13 16 15 Si 0.91 41.30 27.37 68.60 1.88 43.18 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.25 -10.52 6.69 99.48 0.67 -9.86 16 19 C -0.07 -2.11 5.06 -19.84 -0.10 -2.21 16 20 C -0.08 -2.35 9.30 22.26 0.21 -2.14 16 21 C -0.10 -2.79 9.83 22.30 0.22 -2.58 16 22 C -0.03 -0.86 6.32 22.32 0.14 -0.72 16 23 Cl -0.06 -1.52 28.96 -2.72 -0.08 -1.60 16 24 C -0.10 -2.90 9.62 22.31 0.21 -2.68 16 25 C -0.03 -0.71 6.31 22.32 0.14 -0.57 16 26 Cl -0.05 -1.31 27.20 -2.72 -0.07 -1.39 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.68 7.93 -2.39 -0.02 1.66 16 29 H 0.08 1.59 7.94 -2.39 -0.02 1.57 16 30 H 0.42 11.34 6.62 -96.75 -0.64 10.70 16 31 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 33 H 0.07 2.02 6.58 -2.38 -0.02 2.00 16 34 H 0.04 1.83 7.52 -2.39 -0.02 1.81 16 35 H 0.03 1.53 6.14 -2.39 -0.01 1.51 16 36 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 37 H 0.15 3.63 6.08 -2.91 -0.02 3.62 16 38 H 0.15 3.60 8.06 -2.92 -0.02 3.58 16 39 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -63.90 366.21 -0.83 -64.73 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.42 Total: 21.42 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.02 Total: -18.19 kcal Atomic # 7 Polarization: -123.53 SS G_CDS: -2.38 Total: -125.91 kcal Atomic # 8 Polarization: -78.39 SS G_CDS: -4.28 Total: -82.67 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.88 Total: 43.18 kcal Atomic # 16 Polarization: 100.76 SS G_CDS: -0.34 Total: 100.42 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.15 Total: -2.98 kcal Total: -63.90 -0.83 -64.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012946007.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.752 kcal (2) G-P(sol) polarization free energy of solvation -63.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds