Wall clock time and date at job start Tue Mar 31 2020 07:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47271 * 2 1 4 4 N 1.46501 * 109.46963 * 240.00278 * 2 1 3 5 5 S 1.65609 * 120.00135 * 97.42712 * 4 2 1 6 6 O 1.42103 * 106.39941 * 311.46104 * 5 4 2 7 7 O 1.42098 * 106.40299 * 178.53780 * 5 4 2 8 8 N 1.65598 * 107.21553 * 64.99889 * 5 4 2 9 9 C 1.46504 * 120.00042 * 90.00310 * 8 5 4 10 10 C 1.46501 * 120.00200 * 270.00282 * 8 5 4 11 11 C 1.50702 * 109.47375 * 94.99914 * 10 8 5 12 12 H 1.07994 * 119.99795 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99933 * 180.02562 * 11 10 8 14 14 N 1.31510 * 119.99825 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99891 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46898 * 90.00918 * 15 13 11 17 17 H 1.48500 * 109.47091 * 210.00170 * 15 13 11 18 18 H 1.48494 * 109.47543 * 330.00661 * 15 13 11 19 19 C 1.50695 * 109.47323 * 120.00443 * 2 1 3 20 20 C 1.38246 * 119.99664 * 101.97490 * 19 2 1 21 21 C 1.38193 * 120.02679 * 179.97438 * 20 19 2 22 22 C 1.38374 * 120.01688 * 359.97438 * 21 20 19 23 23 Cl 1.73608 * 120.00978 * 179.97438 * 22 21 20 24 24 C 1.38311 * 119.98516 * 0.02562 * 22 21 20 25 25 C 1.38339 * 119.99182 * 281.70073 * 19 2 1 26 26 Cl 1.73598 * 120.00510 * 0.02562 * 25 19 2 27 27 H 1.08999 * 109.46866 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.47009 * 59.99673 * 1 2 3 29 29 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00290 * 277.42894 * 4 2 1 31 31 H 1.08989 * 109.47155 * 89.99837 * 9 8 5 32 32 H 1.09005 * 109.46730 * 209.99735 * 9 8 5 33 33 H 1.08998 * 109.46713 * 329.99873 * 9 8 5 34 34 H 1.08996 * 109.47359 * 215.00265 * 10 8 5 35 35 H 1.09010 * 109.46741 * 334.99908 * 10 8 5 36 36 H 0.97004 * 120.00118 * 179.97438 * 14 13 11 37 37 H 1.08005 * 119.98310 * 359.95005 * 20 19 2 38 38 H 1.08005 * 119.99003 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.01420 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4691 0.1817 -2.5299 6 8 1.4177 1.1043 -2.7801 7 8 2.9211 -0.7612 -3.4920 8 7 3.7905 1.0834 -2.1021 9 6 5.1382 0.5353 -2.2743 10 6 3.6120 2.4291 -1.5514 11 6 3.6202 2.3612 -0.0460 12 1 3.7463 1.4107 0.4509 13 6 3.4667 3.5125 0.6969 14 7 3.4744 3.4532 2.0107 15 14 3.2494 5.1567 -0.1627 16 1 1.8038 5.4083 -0.3915 17 1 3.8114 6.2374 0.6867 18 1 3.9599 5.1315 -1.4663 19 6 2.0324 -0.7105 1.2304 20 6 2.4970 -2.0092 1.1372 21 6 2.9583 -2.6611 2.2650 22 6 2.9560 -2.0141 3.4882 23 17 3.5349 -2.8336 4.9050 24 6 2.4913 -0.7148 3.5820 25 6 2.0338 -0.0610 2.4518 26 17 1.4564 1.5721 2.5674 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.0776 -1.6587 -1.2072 31 1 5.5112 0.7926 -3.2656 32 1 5.8005 0.9546 -1.5168 33 1 5.1057 -0.5491 -2.1685 34 1 4.4248 3.0713 -1.8906 35 1 2.6602 2.8375 -1.8916 36 1 3.3668 4.2633 2.5334 37 1 2.4990 -2.5146 0.1827 38 1 3.3215 -3.6756 2.1915 39 1 2.4896 -0.2093 4.5364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012946012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:56 Heat of formation + Delta-G solvation = -53.850061 kcal Electronic energy + Delta-G solvation = -28075.557861 eV Core-core repulsion = 24004.193537 eV Total energy + Delta-G solvation = -4071.364324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 366.036 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.54375 -36.91275 -36.64433 -35.77999 -35.65681 -35.36664 -35.32278 -32.48783 -30.82173 -30.49331 -28.64875 -28.42975 -25.20640 -23.59521 -22.74724 -21.92910 -20.76683 -18.98204 -17.78613 -17.32336 -16.80995 -16.60023 -16.05267 -15.48685 -15.16099 -14.56948 -14.32565 -13.97180 -13.76171 -13.69008 -13.44475 -13.19334 -12.99265 -12.60917 -12.49737 -12.31673 -12.06478 -11.85536 -11.71285 -11.60989 -11.54133 -11.43661 -11.28617 -11.19419 -10.84636 -10.77178 -10.68101 -10.52329 -10.49726 -10.25113 -9.93232 -9.58713 -9.28762 -8.73061 -8.59446 -8.15771 -8.11337 -6.15067 -4.18107 1.15473 1.24697 1.34464 2.10753 2.88226 3.23133 3.29887 3.35395 3.40112 3.69188 4.05056 4.32201 4.80090 4.84770 4.98325 5.07869 5.14439 5.36238 5.46112 5.52832 5.69995 5.70575 5.77284 5.89182 5.98408 6.09443 6.18748 6.20069 6.29567 6.31117 6.41583 6.54874 6.75582 6.78746 6.84266 7.06016 7.19974 7.41711 7.51629 8.35288 8.82484 9.41484 10.90431 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.005260 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.559769 B = 5322.187641 C = 6878.637360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.157 0.843 4 N -1.123 6.123 5 S 2.787 3.213 6 O -0.978 6.978 7 O -0.999 6.999 8 N -0.992 5.992 9 C 0.107 3.893 10 C 0.208 3.792 11 C -0.553 4.553 12 H 0.089 0.911 13 C 0.090 3.910 14 N -0.863 5.863 15 Si 0.857 3.143 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.265 1.265 19 C -0.063 4.063 20 C -0.097 4.097 21 C -0.117 4.117 22 C -0.030 4.030 23 Cl -0.076 7.076 24 C -0.103 4.103 25 C -0.002 4.002 26 Cl 0.003 6.997 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.404 0.596 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -9.933 1.786 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.174 0.826 4 N -0.882 5.882 5 S 2.795 3.205 6 O -0.962 6.962 7 O -0.983 6.983 8 N -0.833 5.833 9 C -0.039 4.039 10 C 0.085 3.915 11 C -0.591 4.591 12 H 0.107 0.893 13 C -0.116 4.116 14 N -0.499 5.499 15 Si 0.684 3.316 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.066 4.066 20 C -0.115 4.115 21 C -0.135 4.135 22 C -0.057 4.057 23 Cl -0.047 7.047 24 C -0.123 4.123 25 C -0.030 4.030 26 Cl 0.032 6.968 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.238 0.762 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.508 -9.520 1.228 9.921 hybrid contribution 0.349 0.513 0.354 0.714 sum -2.160 -9.007 1.582 9.397 Atomic orbital electron populations 1.22257 0.94508 1.01874 1.03553 1.20379 0.94097 0.99474 0.80116 0.82585 1.56188 1.81850 1.18428 1.31692 1.01720 0.73395 0.72611 0.72789 1.93573 1.54853 1.63616 1.84113 1.93555 1.82442 1.63613 1.58695 1.57386 1.18659 1.27746 1.79525 1.21235 0.84204 0.97461 1.01048 1.19690 0.98059 0.78461 0.95310 1.21418 1.52362 0.96502 0.88849 0.89337 1.24727 0.94140 0.98114 0.94642 1.69952 1.47401 1.28294 1.04211 0.87153 0.79279 0.84828 0.80382 1.19862 1.21195 1.18985 1.19944 0.98449 0.94049 0.94165 1.20749 0.98900 0.93838 0.98061 1.20927 1.01361 1.00484 0.90773 1.20679 1.03147 0.93621 0.88239 1.98351 1.87517 1.78774 1.40064 1.20867 0.99564 0.92848 0.99002 1.20771 0.99764 0.89298 0.93211 1.98497 1.85970 1.14232 1.98060 0.91220 0.90798 0.92881 0.76228 0.93688 0.90510 0.92614 0.94568 0.93964 0.92723 0.84977 0.85001 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.42 37.16 0.35 -2.18 16 2 C 0.17 2.84 2.14 -69.08 -0.15 2.69 16 3 H 0.16 3.18 3.68 -51.93 -0.19 2.99 16 4 N -1.12 -17.74 5.29 -5.89 -0.03 -17.77 16 5 S 2.79 51.85 6.00 -107.50 -0.64 51.21 16 6 O -0.98 -20.81 16.21 -57.17 -0.93 -21.73 16 7 O -1.00 -19.34 17.21 -57.17 -0.98 -20.32 16 8 N -0.99 -18.93 3.23 -123.05 -0.40 -19.33 16 9 C 0.11 1.73 10.31 59.85 0.62 2.34 16 10 C 0.21 4.53 4.34 -5.19 -0.02 4.50 16 11 C -0.55 -12.98 7.48 -34.44 -0.26 -13.23 16 12 H 0.09 2.19 7.02 -52.49 -0.37 1.82 16 13 C 0.09 2.19 5.35 -17.82 -0.10 2.09 16 14 N -0.86 -21.51 11.46 55.43 0.64 -20.88 16 15 Si 0.86 19.33 27.47 -169.99 -4.67 14.66 16 16 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 19 C -0.06 -1.03 4.89 -104.58 -0.51 -1.54 16 20 C -0.10 -1.32 9.30 -39.59 -0.37 -1.68 16 21 C -0.12 -1.50 9.83 -39.55 -0.39 -1.89 16 22 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 16 23 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 24 C -0.10 -1.61 9.62 -39.51 -0.38 -1.99 16 25 C 0.00 -0.04 6.29 -39.50 -0.25 -0.29 16 26 Cl 0.00 0.05 23.90 -51.86 -1.24 -1.19 16 27 H 0.07 1.06 7.06 -51.93 -0.37 0.69 16 28 H 0.07 1.20 7.90 -51.93 -0.41 0.79 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.40 5.14 6.56 -34.48 -0.23 4.92 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 34 H 0.04 0.78 7.17 -51.93 -0.37 0.41 16 35 H 0.04 0.96 6.34 -51.92 -0.33 0.63 16 36 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 37 H 0.13 1.47 5.93 -52.48 -0.31 1.16 16 38 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 39 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -27.59 353.99 -10.38 -37.97 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -4.26 Total: 6.32 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.70 Total: -11.84 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.21 Total: -57.98 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.91 Total: -42.05 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.67 Total: 14.66 kcal Atomic # 16 Polarization: 51.85 SS G_CDS: -0.64 Total: 51.21 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.74 Total: -3.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.59 -10.38 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012946012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.878 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds