Wall clock time and date at job start Tue Mar 31 2020 07:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47271 * 2 1 4 4 N 1.46501 * 109.46963 * 240.00278 * 2 1 3 5 5 S 1.65609 * 120.00135 * 97.42712 * 4 2 1 6 6 O 1.42103 * 106.39941 * 311.46104 * 5 4 2 7 7 O 1.42098 * 106.40299 * 178.53780 * 5 4 2 8 8 N 1.65598 * 107.21553 * 64.99889 * 5 4 2 9 9 C 1.46504 * 120.00042 * 90.00310 * 8 5 4 10 10 C 1.46501 * 120.00200 * 270.00282 * 8 5 4 11 11 C 1.50702 * 109.47375 * 94.99914 * 10 8 5 12 12 H 1.07994 * 119.99795 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99933 * 180.02562 * 11 10 8 14 14 N 1.31510 * 119.99825 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99891 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46898 * 90.00918 * 15 13 11 17 17 H 1.48500 * 109.47091 * 210.00170 * 15 13 11 18 18 H 1.48494 * 109.47543 * 330.00661 * 15 13 11 19 19 C 1.50695 * 109.47323 * 120.00443 * 2 1 3 20 20 C 1.38246 * 119.99664 * 101.97490 * 19 2 1 21 21 C 1.38193 * 120.02679 * 179.97438 * 20 19 2 22 22 C 1.38374 * 120.01688 * 359.97438 * 21 20 19 23 23 Cl 1.73608 * 120.00978 * 179.97438 * 22 21 20 24 24 C 1.38311 * 119.98516 * 0.02562 * 22 21 20 25 25 C 1.38339 * 119.99182 * 281.70073 * 19 2 1 26 26 Cl 1.73598 * 120.00510 * 0.02562 * 25 19 2 27 27 H 1.08999 * 109.46866 * 299.99760 * 1 2 3 28 28 H 1.09004 * 109.47009 * 59.99673 * 1 2 3 29 29 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 30 30 H 0.97004 * 120.00290 * 277.42894 * 4 2 1 31 31 H 1.08989 * 109.47155 * 89.99837 * 9 8 5 32 32 H 1.09005 * 109.46730 * 209.99735 * 9 8 5 33 33 H 1.08998 * 109.46713 * 329.99873 * 9 8 5 34 34 H 1.08996 * 109.47359 * 215.00265 * 10 8 5 35 35 H 1.09010 * 109.46741 * 334.99908 * 10 8 5 36 36 H 0.97004 * 120.00118 * 179.97438 * 14 13 11 37 37 H 1.08005 * 119.98310 * 359.95005 * 20 19 2 38 38 H 1.08005 * 119.99003 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.01420 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4691 0.1817 -2.5299 6 8 1.4177 1.1043 -2.7801 7 8 2.9211 -0.7612 -3.4920 8 7 3.7905 1.0834 -2.1021 9 6 5.1382 0.5353 -2.2743 10 6 3.6120 2.4291 -1.5514 11 6 3.6202 2.3612 -0.0460 12 1 3.7463 1.4107 0.4509 13 6 3.4667 3.5125 0.6969 14 7 3.4744 3.4532 2.0107 15 14 3.2494 5.1567 -0.1627 16 1 1.8038 5.4083 -0.3915 17 1 3.8114 6.2374 0.6867 18 1 3.9599 5.1315 -1.4663 19 6 2.0324 -0.7105 1.2304 20 6 2.4970 -2.0092 1.1372 21 6 2.9583 -2.6611 2.2650 22 6 2.9560 -2.0141 3.4882 23 17 3.5349 -2.8336 4.9050 24 6 2.4913 -0.7148 3.5820 25 6 2.0338 -0.0610 2.4518 26 17 1.4564 1.5721 2.5674 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 2.0776 -1.6587 -1.2072 31 1 5.5112 0.7926 -3.2656 32 1 5.8005 0.9546 -1.5168 33 1 5.1057 -0.5491 -2.1685 34 1 4.4248 3.0713 -1.8906 35 1 2.6602 2.8375 -1.8916 36 1 3.3668 4.2633 2.5334 37 1 2.4990 -2.5146 0.1827 38 1 3.3215 -3.6756 2.1915 39 1 2.4896 -0.2093 4.5364 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012946012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:53 Heat of formation + Delta-G solvation = -70.971111 kcal Electronic energy + Delta-G solvation = -28076.300286 eV Core-core repulsion = 24004.193537 eV Total energy + Delta-G solvation = -4072.106748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 366.036 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.71772 -38.36796 -37.84682 -37.25507 -37.02877 -36.88590 -36.60374 -34.29425 -32.01972 -31.68133 -30.12914 -29.82978 -26.69059 -24.81150 -23.95700 -23.58182 -22.00338 -20.41632 -19.26419 -18.80766 -18.35609 -18.05618 -17.36966 -16.83345 -16.46889 -16.08026 -15.76783 -15.33456 -15.12341 -14.96991 -14.67034 -14.48640 -14.35882 -14.24412 -14.02417 -13.62700 -13.41971 -13.26210 -13.17101 -13.06898 -13.00531 -12.88218 -12.73475 -12.50311 -12.33406 -12.23409 -12.00092 -11.95674 -11.86661 -11.75466 -11.38063 -11.26984 -10.63061 -10.49962 -9.80830 -9.69835 -9.37110 -8.01583 -6.04591 -0.29887 0.07212 0.20293 1.01240 1.41155 1.48489 1.51481 1.62194 1.95792 2.46887 2.53679 2.60949 3.25850 3.41848 3.64058 3.79068 4.02743 4.07057 4.23549 4.29449 4.44545 4.48419 4.60454 4.71751 4.73292 4.81559 4.87990 5.03603 5.06758 5.09046 5.11156 5.17633 5.31742 5.41840 5.53588 5.62481 5.66063 5.79383 6.20674 6.48920 6.94852 7.54414 9.03635 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.005260 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.559769 B = 5322.187641 C = 6878.637360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.166 3.834 3 H 0.126 0.874 4 N -1.108 6.108 5 S 2.800 3.200 6 O -1.008 7.008 7 O -1.004 7.004 8 N -0.997 5.997 9 C 0.098 3.902 10 C 0.214 3.786 11 C -0.538 4.538 12 H 0.075 0.925 13 C 0.057 3.943 14 N -0.880 5.880 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.256 1.256 19 C -0.076 4.076 20 C -0.092 4.092 21 C -0.105 4.105 22 C -0.032 4.032 23 Cl -0.060 7.060 24 C -0.114 4.114 25 C -0.022 4.022 26 Cl -0.027 7.027 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.420 0.580 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.258 0.742 37 H 0.161 0.839 38 H 0.165 0.835 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -12.266 1.270 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.059 3.941 3 H 0.143 0.857 4 N -0.871 5.871 5 S 2.808 3.192 6 O -0.991 6.991 7 O -0.988 6.988 8 N -0.838 5.838 9 C -0.047 4.047 10 C 0.089 3.911 11 C -0.577 4.577 12 H 0.093 0.907 13 C -0.147 4.147 14 N -0.516 5.516 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.180 1.180 19 C -0.078 4.078 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.059 4.059 23 Cl -0.031 7.031 24 C -0.133 4.133 25 C -0.050 4.050 26 Cl 0.002 6.998 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.257 0.743 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.778 -11.878 0.694 12.031 hybrid contribution 0.154 1.090 0.563 1.237 sum -1.624 -10.788 1.257 10.982 Atomic orbital electron populations 1.22236 0.93628 1.03317 1.02843 1.20172 0.94864 0.98194 0.80824 0.85664 1.55826 1.81449 1.19221 1.30589 1.01199 0.72859 0.72230 0.72928 1.93538 1.56030 1.64734 1.84815 1.93544 1.82483 1.63493 1.59256 1.57348 1.20108 1.26985 1.79402 1.21466 0.82698 0.98585 1.01950 1.19470 0.97457 0.79980 0.94212 1.21427 1.51031 0.95655 0.89613 0.90714 1.25121 0.94703 0.99818 0.95026 1.70039 1.48639 1.28231 1.04737 0.86643 0.78677 0.82990 0.80161 1.20702 1.21533 1.18006 1.19943 0.99509 0.95173 0.93205 1.21060 0.97667 0.92738 0.99630 1.21303 0.99676 1.01634 0.89743 1.20808 1.02572 0.93139 0.89412 1.98360 1.87220 1.78212 1.39357 1.20924 1.00012 0.93759 0.98620 1.20880 1.01377 0.88326 0.94377 1.98479 1.86501 1.16635 1.98167 0.91480 0.91986 0.90325 0.74263 0.92079 0.90746 0.90642 0.94328 0.95231 0.93210 0.82177 0.81709 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.42 71.98 0.68 -4.22 16 2 C 0.17 5.55 2.14 44.24 0.09 5.65 16 3 H 0.13 5.12 3.68 -2.39 -0.01 5.11 16 4 N -1.11 -32.89 5.29 -172.53 -0.91 -33.81 16 5 S 2.80 100.28 6.00 -56.49 -0.34 99.94 16 6 O -1.01 -42.53 16.21 -128.00 -2.08 -44.61 16 7 O -1.00 -36.57 17.21 -128.00 -2.20 -38.77 16 8 N -1.00 -36.82 3.23 -543.21 -1.75 -38.57 16 9 C 0.10 2.97 10.31 127.77 1.32 4.28 16 10 C 0.21 9.18 4.34 85.63 0.37 9.55 16 11 C -0.54 -25.31 7.48 25.60 0.19 -25.12 16 12 H 0.07 3.71 7.02 -2.91 -0.02 3.69 16 13 C 0.06 2.81 5.35 84.66 0.45 3.26 16 14 N -0.88 -44.63 11.46 21.45 0.25 -44.38 16 15 Si 0.89 39.81 27.47 68.60 1.88 41.69 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 18 H -0.26 -10.97 6.54 99.48 0.65 -10.32 16 19 C -0.08 -2.35 4.89 -19.84 -0.10 -2.45 16 20 C -0.09 -2.22 9.30 22.26 0.21 -2.01 16 21 C -0.10 -2.33 9.83 22.29 0.22 -2.11 16 22 C -0.03 -0.83 6.32 22.32 0.14 -0.69 16 23 Cl -0.06 -1.36 28.96 -2.72 -0.08 -1.44 16 24 C -0.11 -3.46 9.62 22.31 0.21 -3.24 16 25 C -0.02 -0.74 6.29 22.32 0.14 -0.60 16 26 Cl -0.03 -1.08 23.90 -2.72 -0.06 -1.14 16 27 H 0.07 2.05 7.06 -2.39 -0.02 2.04 16 28 H 0.06 2.01 7.90 -2.38 -0.02 1.99 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.42 9.39 6.56 -96.74 -0.63 8.75 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 2.27 8.07 -2.38 -0.02 2.25 16 33 H 0.07 1.95 7.79 -2.39 -0.02 1.94 16 34 H 0.04 1.63 7.17 -2.39 -0.02 1.62 16 35 H 0.03 1.35 6.34 -2.38 -0.02 1.34 16 36 H 0.26 12.91 8.31 -92.71 -0.77 12.14 16 37 H 0.16 2.85 5.93 -2.91 -0.02 2.83 16 38 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -58.77 353.99 -0.94 -59.72 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.42 Total: 19.07 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 3.93 Total: -17.71 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -2.42 Total: -116.76 kcal Atomic # 8 Polarization: -79.10 SS G_CDS: -4.28 Total: -83.38 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 1.88 Total: 41.69 kcal Atomic # 16 Polarization: 100.28 SS G_CDS: -0.34 Total: 99.94 kcal Atomic # 17 Polarization: -2.44 SS G_CDS: -0.14 Total: -2.58 kcal Total: -58.77 -0.94 -59.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012946012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.255 kcal (2) G-P(sol) polarization free energy of solvation -58.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds