Wall clock time and date at job start Tue Mar 31 2020 06:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48501 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 299.99920 * 3 2 1 6 6 H 1.48504 * 109.47198 * 60.00105 * 3 2 1 7 7 C 1.37878 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99594 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46682 * 175.05979 * 9 7 2 11 11 C 1.46899 * 111.00074 * 75.15028 * 10 9 7 12 12 C 1.53001 * 109.47148 * 199.76590 * 11 10 9 13 13 C 1.50695 * 109.47355 * 174.92768 * 12 11 10 14 14 C 1.38237 * 119.61646 * 125.02212 * 13 12 11 15 15 C 1.38630 * 119.15872 * 179.74978 * 14 13 12 16 16 C 1.38672 * 118.41972 * 0.46974 * 15 14 13 17 17 C 1.38180 * 119.16389 * 359.51077 * 16 15 14 18 18 N 1.31847 * 119.62083 * 305.00303 * 13 12 11 19 19 C 1.46903 * 110.99962 * 199.10268 * 10 9 7 20 20 N 1.46497 * 109.47160 * 81.04281 * 19 10 9 21 21 C 1.34524 * 124.46306 * 269.70098 * 20 19 10 22 22 O 1.21445 * 125.70795 * 0.03399 * 21 20 19 23 23 C 1.47814 * 108.58061 * 179.90430 * 21 20 19 24 24 C 1.38567 * 134.29873 * 180.12699 * 23 21 20 25 25 C 1.38612 * 119.72030 * 180.29079 * 24 23 21 26 26 C 1.38228 * 120.46063 * 359.95113 * 25 24 23 27 27 C 1.38617 * 120.45651 * 0.03038 * 26 25 24 28 28 C 1.38564 * 119.72071 * 359.97438 * 27 26 25 29 29 C 1.34530 * 124.45834 * 89.99926 * 20 19 10 30 30 O 1.21446 * 125.70964 * 359.94574 * 29 20 19 31 31 H 0.96998 * 120.00533 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47381 * 55.06055 * 9 7 2 33 33 H 1.09001 * 109.47368 * 295.05478 * 9 7 2 34 34 H 1.08991 * 109.47466 * 79.76417 * 11 10 9 35 35 H 1.08995 * 109.47054 * 319.76124 * 11 10 9 36 36 H 1.09000 * 109.47274 * 54.92315 * 12 11 10 37 37 H 1.09004 * 109.46787 * 294.93263 * 12 11 10 38 38 H 1.07997 * 120.41570 * 359.95339 * 14 13 12 39 39 H 1.07996 * 120.78860 * 180.22927 * 15 14 13 40 40 H 1.07997 * 120.41838 * 179.77734 * 16 15 14 41 41 H 1.08000 * 119.61709 * 180.25354 * 17 16 15 42 42 H 1.08993 * 109.47167 * 201.04299 * 19 10 9 43 43 H 1.08998 * 109.46778 * 321.04720 * 19 10 9 44 44 H 1.08003 * 120.14193 * 0.23871 * 24 23 21 45 45 H 1.07994 * 119.77272 * 179.97438 * 25 24 23 46 46 H 1.07991 * 119.77276 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.13848 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6131 -0.1181 11 6 2.9070 -3.8405 1.1500 12 6 4.1909 -4.6293 0.8850 13 6 4.9765 -4.7551 2.1648 14 6 5.3472 -6.0071 2.6186 15 6 6.0743 -6.1115 3.7943 16 6 6.3943 -4.9481 4.4778 17 6 5.9896 -3.7315 3.9627 18 7 5.3027 -3.6697 2.8385 19 6 1.5250 -4.8361 -0.5708 20 7 1.3564 -4.7910 -2.0254 21 6 0.2827 -4.2767 -2.6517 22 8 -0.6854 -3.7832 -2.1092 23 6 0.4797 -4.4099 -4.1105 24 6 -0.2698 -4.0651 -5.2238 25 6 0.2154 -4.3434 -6.4920 26 6 1.4414 -4.9611 -6.6533 27 6 2.2023 -5.3114 -5.5489 28 6 1.7300 -5.0395 -4.2749 29 6 2.2525 -5.2636 -2.9105 30 8 3.3134 -5.7864 -2.6347 31 1 -0.4851 0.8400 -0.0004 32 1 0.5600 -2.5197 -0.8421 33 1 0.6921 -2.5960 0.9313 34 1 2.2661 -4.4061 1.8262 35 1 3.1570 -2.8815 1.6037 36 1 4.7911 -4.1069 0.1400 37 1 3.9371 -5.6228 0.5152 38 1 5.0767 -6.8925 2.0625 39 1 6.3808 -7.0761 4.1710 40 1 6.9565 -4.9921 5.3989 41 1 6.2384 -2.8206 4.4869 42 1 2.1260 -5.7045 -0.3015 43 1 0.5476 -4.9084 -0.0939 44 1 -1.2285 -3.5823 -5.1038 45 1 -0.3683 -4.0754 -7.3602 46 1 1.8089 -5.1724 -7.6465 47 1 3.1594 -5.7943 -5.6808 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013281648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:52 Heat of formation + Delta-G solvation = 35.547509 kcal Electronic energy + Delta-G solvation = -32293.583910 eV Core-core repulsion = 28021.760740 eV Total energy + Delta-G solvation = -4271.823170 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 7.84 seconds Orbital eigenvalues (eV) -41.99567 -40.08327 -38.50124 -38.24608 -36.82295 -35.26336 -33.23832 -32.47720 -32.19349 -31.25728 -31.16562 -28.78160 -27.39947 -25.37329 -24.87376 -23.65120 -23.20903 -22.76859 -21.98133 -21.27780 -20.33226 -19.51003 -17.60739 -17.07211 -16.78091 -16.53963 -16.37645 -16.04937 -15.94513 -15.40613 -15.06957 -14.78702 -14.55492 -14.49660 -14.29482 -14.01931 -13.79877 -13.68357 -13.53468 -13.35762 -12.90680 -12.72604 -12.62215 -12.39805 -12.35513 -11.92409 -11.71044 -11.67245 -11.42164 -11.07667 -10.68683 -10.62688 -10.39280 -10.19087 -9.97803 -9.85053 -9.78074 -9.57048 -9.26597 -9.22779 -9.17405 -9.10957 -8.84048 -8.33444 -7.46447 -5.92555 -3.93963 0.18857 0.93952 1.19186 1.35795 2.18136 2.63971 3.32503 3.37075 3.44032 3.51106 3.60317 3.79151 3.89986 4.40928 4.48539 4.51467 4.59913 4.68941 4.77750 4.86312 4.98675 5.04752 5.10516 5.17911 5.19705 5.25084 5.40748 5.42788 5.57707 5.59479 5.67231 5.69198 5.75802 5.82462 5.90977 5.93615 6.03667 6.08228 6.10277 6.18002 6.23270 6.52426 6.54408 6.75204 6.81798 7.00351 7.24422 7.34489 7.55635 7.83029 7.93343 8.16449 8.17878 8.18812 8.52765 9.13414 9.69104 11.17432 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003538 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.865317 B = 7911.859613 C =10759.594370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.185 3.815 10 N -0.548 5.548 11 C 0.080 3.920 12 C -0.069 4.069 13 C 0.145 3.855 14 C -0.175 4.175 15 C -0.077 4.077 16 C -0.189 4.189 17 C 0.103 3.897 18 N -0.472 5.472 19 C 0.275 3.725 20 N -0.559 5.559 21 C 0.569 3.431 22 O -0.441 6.441 23 C -0.128 4.128 24 C -0.049 4.049 25 C -0.100 4.100 26 C -0.104 4.104 27 C -0.050 4.050 28 C -0.137 4.137 29 C 0.582 3.418 30 O -0.469 6.469 31 H 0.259 0.741 32 H 0.049 0.951 33 H -0.008 1.008 34 H 0.023 0.977 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.153 0.847 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 -15.486 -5.889 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.061 3.939 10 N -0.274 5.274 11 C -0.049 4.049 12 C -0.107 4.107 13 C 0.007 3.993 14 C -0.195 4.195 15 C -0.103 4.103 16 C -0.209 4.209 17 C -0.054 4.054 18 N -0.181 5.181 19 C 0.065 3.935 20 N -0.302 5.302 21 C 0.356 3.644 22 O -0.310 6.310 23 C -0.132 4.132 24 C -0.068 4.068 25 C -0.118 4.118 26 C -0.122 4.122 27 C -0.069 4.069 28 C -0.140 4.140 29 C 0.370 3.630 30 O -0.341 6.341 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.010 0.990 34 H 0.041 0.959 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.697 -14.424 -5.986 16.624 hybrid contribution 0.173 0.064 1.043 1.059 sum 5.871 -14.361 -4.943 16.283 Atomic orbital electron populations 1.69996 1.05932 1.26455 1.50978 1.24966 0.94805 0.99148 0.95598 0.86498 0.80282 0.83655 0.77373 1.19577 1.21177 1.21136 1.21155 0.93556 0.89682 1.49804 0.91755 1.20012 0.90010 0.86967 0.96919 1.61821 1.31265 1.04440 1.29843 1.21841 0.92062 1.01394 0.89580 1.20654 0.96427 1.01287 0.92326 1.21442 0.93906 0.88273 0.95697 1.22016 1.00918 0.98793 0.97785 1.21525 0.95669 0.98753 0.94334 1.22083 1.03191 0.93895 1.01723 1.22814 0.93117 0.97517 0.91953 1.67593 1.11039 1.32505 1.07001 1.22045 0.99444 0.95614 0.76425 1.46615 1.19319 1.54975 1.09271 1.18324 0.82387 0.76773 0.86921 1.90868 1.29948 1.37273 1.72913 1.20726 0.96460 1.01666 0.94328 1.20818 0.99605 0.96141 0.90231 1.21402 0.96067 0.97398 0.96945 1.21382 0.94393 0.97635 0.98795 1.20747 0.99694 0.96851 0.89588 1.20714 0.96411 1.02418 0.94493 1.18225 0.82887 0.76623 0.85227 1.90742 1.20046 1.39548 1.83757 0.93110 0.93314 0.99016 0.95902 0.87922 0.88852 0.90971 0.84984 0.85237 0.85223 0.82926 0.88799 0.91419 0.84121 0.84410 0.84467 0.84328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 22.60 29.54 -169.99 -5.02 17.58 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.50 -14.66 8.51 -34.44 -0.29 -14.95 16 8 H 0.06 1.89 7.73 -52.49 -0.41 1.49 16 9 C 0.19 4.97 4.58 -4.97 -0.02 4.94 16 10 N -0.55 -12.00 4.46 -239.99 -1.07 -13.07 16 11 C 0.08 1.57 4.67 -3.82 -0.02 1.55 16 12 C -0.07 -1.14 5.66 -27.89 -0.16 -1.30 16 13 C 0.14 2.25 6.18 -82.59 -0.51 1.74 16 14 C -0.18 -2.19 9.71 -39.44 -0.38 -2.57 16 15 C -0.08 -0.82 10.18 -39.28 -0.40 -1.22 16 16 C -0.19 -2.05 10.11 -39.44 -0.40 -2.45 16 17 C 0.10 1.37 11.18 -17.55 -0.20 1.18 16 18 N -0.47 -7.89 9.78 -9.47 -0.09 -7.98 16 19 C 0.28 5.12 5.35 -63.31 -0.34 4.78 16 20 N -0.56 -10.34 2.84 -120.91 -0.34 -10.68 16 21 C 0.57 10.82 7.36 -12.46 -0.09 10.73 16 22 O -0.44 -9.83 15.89 5.41 0.09 -9.75 16 23 C -0.13 -1.96 6.40 -104.83 -0.67 -2.63 16 24 C -0.05 -0.59 10.09 -39.32 -0.40 -0.98 16 25 C -0.10 -0.87 10.04 -39.45 -0.40 -1.27 16 26 C -0.10 -0.87 10.04 -39.44 -0.40 -1.26 16 27 C -0.05 -0.54 10.09 -39.32 -0.40 -0.93 16 28 C -0.14 -1.97 6.40 -104.84 -0.67 -2.64 16 29 C 0.58 9.97 8.02 -12.45 -0.10 9.87 16 30 O -0.47 -8.55 17.68 5.41 0.10 -8.46 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.05 1.41 5.20 -51.93 -0.27 1.14 16 33 H -0.01 -0.23 8.01 -51.93 -0.42 -0.64 16 34 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 35 H 0.10 2.33 6.87 -51.93 -0.36 1.97 16 36 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 37 H 0.07 1.06 6.64 -51.93 -0.34 0.72 16 38 H 0.13 1.37 7.95 -52.49 -0.42 0.95 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.09 1.50 6.34 -51.93 -0.33 1.17 16 43 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 44 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 46 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 402.15 15.07 6.06 6.06 Total: -1.00 -36.36 402.15 -11.36 -47.72 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.87 Total: 1.26 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -5.94 Total: 4.14 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.77 Total: -58.55 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.36 -11.36 -47.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013281648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.268 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.85 seconds