Wall clock time and date at job start Tue Mar 31 2020 06:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48501 * 109.46937 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 299.99920 * 3 2 1 6 6 H 1.48504 * 109.47198 * 60.00105 * 3 2 1 7 7 C 1.37878 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99594 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.46682 * 175.05979 * 9 7 2 11 11 C 1.46899 * 111.00074 * 75.15028 * 10 9 7 12 12 C 1.53001 * 109.47148 * 199.76590 * 11 10 9 13 13 C 1.50695 * 109.47355 * 174.92768 * 12 11 10 14 14 C 1.38237 * 119.61646 * 125.02212 * 13 12 11 15 15 C 1.38630 * 119.15872 * 179.74978 * 14 13 12 16 16 C 1.38672 * 118.41972 * 0.46974 * 15 14 13 17 17 C 1.38180 * 119.16389 * 359.51077 * 16 15 14 18 18 N 1.31847 * 119.62083 * 305.00303 * 13 12 11 19 19 C 1.46903 * 110.99962 * 199.10268 * 10 9 7 20 20 N 1.46497 * 109.47160 * 81.04281 * 19 10 9 21 21 C 1.34524 * 124.46306 * 269.70098 * 20 19 10 22 22 O 1.21445 * 125.70795 * 0.03399 * 21 20 19 23 23 C 1.47814 * 108.58061 * 179.90430 * 21 20 19 24 24 C 1.38567 * 134.29873 * 180.12699 * 23 21 20 25 25 C 1.38612 * 119.72030 * 180.29079 * 24 23 21 26 26 C 1.38228 * 120.46063 * 359.95113 * 25 24 23 27 27 C 1.38617 * 120.45651 * 0.03038 * 26 25 24 28 28 C 1.38564 * 119.72071 * 359.97438 * 27 26 25 29 29 C 1.34530 * 124.45834 * 89.99926 * 20 19 10 30 30 O 1.21446 * 125.70964 * 359.94574 * 29 20 19 31 31 H 0.96998 * 120.00533 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47381 * 55.06055 * 9 7 2 33 33 H 1.09001 * 109.47368 * 295.05478 * 9 7 2 34 34 H 1.08991 * 109.47466 * 79.76417 * 11 10 9 35 35 H 1.08995 * 109.47054 * 319.76124 * 11 10 9 36 36 H 1.09000 * 109.47274 * 54.92315 * 12 11 10 37 37 H 1.09004 * 109.46787 * 294.93263 * 12 11 10 38 38 H 1.07997 * 120.41570 * 359.95339 * 14 13 12 39 39 H 1.07996 * 120.78860 * 180.22927 * 15 14 13 40 40 H 1.07997 * 120.41838 * 179.77734 * 16 15 14 41 41 H 1.08000 * 119.61709 * 180.25354 * 17 16 15 42 42 H 1.08993 * 109.47167 * 201.04299 * 19 10 9 43 43 H 1.08998 * 109.46778 * 321.04720 * 19 10 9 44 44 H 1.08003 * 120.14193 * 0.23871 * 24 23 21 45 45 H 1.07994 * 119.77272 * 179.97438 * 25 24 23 46 46 H 1.07991 * 119.77276 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.13848 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2014 -3.6131 -0.1181 11 6 2.9070 -3.8405 1.1500 12 6 4.1909 -4.6293 0.8850 13 6 4.9765 -4.7551 2.1648 14 6 5.3472 -6.0071 2.6186 15 6 6.0743 -6.1115 3.7943 16 6 6.3943 -4.9481 4.4778 17 6 5.9896 -3.7315 3.9627 18 7 5.3027 -3.6697 2.8385 19 6 1.5250 -4.8361 -0.5708 20 7 1.3564 -4.7910 -2.0254 21 6 0.2827 -4.2767 -2.6517 22 8 -0.6854 -3.7832 -2.1092 23 6 0.4797 -4.4099 -4.1105 24 6 -0.2698 -4.0651 -5.2238 25 6 0.2154 -4.3434 -6.4920 26 6 1.4414 -4.9611 -6.6533 27 6 2.2023 -5.3114 -5.5489 28 6 1.7300 -5.0395 -4.2749 29 6 2.2525 -5.2636 -2.9105 30 8 3.3134 -5.7864 -2.6347 31 1 -0.4851 0.8400 -0.0004 32 1 0.5600 -2.5197 -0.8421 33 1 0.6921 -2.5960 0.9313 34 1 2.2661 -4.4061 1.8262 35 1 3.1570 -2.8815 1.6037 36 1 4.7911 -4.1069 0.1400 37 1 3.9371 -5.6228 0.5152 38 1 5.0767 -6.8925 2.0625 39 1 6.3808 -7.0761 4.1710 40 1 6.9565 -4.9921 5.3989 41 1 6.2384 -2.8206 4.4869 42 1 2.1260 -5.7045 -0.3015 43 1 0.5476 -4.9084 -0.0939 44 1 -1.2285 -3.5823 -5.1038 45 1 -0.3683 -4.0754 -7.3602 46 1 1.8089 -5.1724 -7.6465 47 1 3.1594 -5.7943 -5.6808 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013281648.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:45 Heat of formation + Delta-G solvation = 11.089282 kcal Electronic energy + Delta-G solvation = -32294.644498 eV Core-core repulsion = 28021.760740 eV Total energy + Delta-G solvation = -4272.883758 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.29492 -41.11666 -39.72275 -39.56417 -38.44532 -36.69673 -34.99363 -34.10103 -33.21968 -32.47320 -32.06227 -30.26876 -29.11963 -26.93130 -26.11694 -25.08813 -24.40287 -24.02305 -23.11338 -22.68126 -21.82048 -20.84548 -18.89580 -18.58592 -18.33825 -17.80377 -17.76579 -17.30439 -17.10666 -16.75721 -16.36876 -16.32404 -16.01432 -15.77394 -15.40093 -15.31356 -15.12264 -14.98758 -14.91885 -14.69341 -14.33659 -14.09267 -13.88818 -13.71728 -13.65667 -13.26933 -13.17298 -12.98210 -12.74106 -12.59904 -12.56945 -12.44657 -12.09834 -11.77398 -11.54571 -11.52850 -11.32526 -11.01962 -10.77983 -10.61842 -10.24823 -10.16068 -10.14633 -9.87206 -9.31827 -8.22172 -6.32871 -0.93054 0.04831 0.20067 0.42855 1.06778 1.27790 1.33502 1.34538 1.49266 1.94631 2.36040 2.62486 2.72499 2.85063 3.03938 3.12002 3.29740 3.45023 3.66513 3.81364 3.83141 4.03117 4.06028 4.10384 4.13598 4.22988 4.23350 4.28334 4.29565 4.35280 4.44456 4.53418 4.58462 4.72912 4.84264 4.88994 4.96496 5.01315 5.02408 5.16857 5.23714 5.26557 5.29154 5.30530 5.32582 5.57148 5.65693 5.76682 5.84869 5.97669 6.14975 6.19837 6.38718 6.65147 6.80878 7.16127 7.35175 8.88309 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007213 B = 0.003538 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3880.865317 B = 7911.859613 C =10759.594370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.205 3.795 10 N -0.554 5.554 11 C 0.088 3.912 12 C -0.051 4.051 13 C 0.113 3.887 14 C -0.172 4.172 15 C -0.072 4.072 16 C -0.174 4.174 17 C 0.081 3.919 18 N -0.521 5.521 19 C 0.275 3.725 20 N -0.570 5.570 21 C 0.559 3.441 22 O -0.495 6.495 23 C -0.161 4.161 24 C -0.054 4.054 25 C -0.082 4.082 26 C -0.081 4.081 27 C -0.043 4.043 28 C -0.157 4.157 29 C 0.578 3.422 30 O -0.486 6.486 31 H 0.264 0.736 32 H 0.025 0.975 33 H -0.042 1.042 34 H 0.030 0.970 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.123 0.877 43 H 0.058 0.942 44 H 0.144 0.856 45 H 0.182 0.818 46 H 0.188 0.812 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -17.083 -8.132 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.079 3.921 10 N -0.280 5.280 11 C -0.041 4.041 12 C -0.089 4.089 13 C -0.025 4.025 14 C -0.192 4.192 15 C -0.098 4.098 16 C -0.193 4.193 17 C -0.076 4.076 18 N -0.231 5.231 19 C 0.065 3.935 20 N -0.312 5.312 21 C 0.350 3.650 22 O -0.369 6.369 23 C -0.164 4.164 24 C -0.073 4.073 25 C -0.100 4.100 26 C -0.098 4.098 27 C -0.061 4.061 28 C -0.160 4.160 29 C 0.369 3.631 30 O -0.360 6.360 31 H 0.073 0.927 32 H 0.043 0.957 33 H -0.024 1.024 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.141 0.859 43 H 0.076 0.924 44 H 0.161 0.839 45 H 0.200 0.800 46 H 0.205 0.795 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.947 -16.054 -8.249 19.721 hybrid contribution -0.492 0.473 1.689 1.822 sum 7.455 -15.581 -6.560 18.476 Atomic orbital electron populations 1.70132 1.07587 1.27671 1.51609 1.25881 0.95713 1.03019 0.94861 0.85387 0.78775 0.78794 0.78004 1.19260 1.19978 1.19995 1.21379 0.93159 0.91148 1.50074 0.92756 1.19565 0.90010 0.88470 0.94036 1.61771 1.30293 1.04783 1.31122 1.21722 0.93588 1.00195 0.88550 1.20404 0.94343 1.01026 0.93138 1.21272 0.95824 0.89645 0.95712 1.22243 1.00399 0.97990 0.98579 1.22019 0.94166 1.00478 0.93158 1.22490 1.01640 0.92799 1.02394 1.23198 0.93385 0.99581 0.91474 1.67452 1.12779 1.33983 1.08879 1.22076 0.99179 0.94984 0.77269 1.46721 1.19973 1.55261 1.09198 1.19108 0.81515 0.75316 0.89053 1.90815 1.31789 1.39940 1.74320 1.20572 0.98285 1.05127 0.92439 1.21149 0.99592 0.95779 0.90748 1.21930 0.96348 0.95216 0.96458 1.21984 0.93172 0.94667 0.99987 1.21201 1.00709 0.95752 0.88449 1.20609 0.96333 1.04766 0.94316 1.18716 0.82299 0.75715 0.86378 1.90708 1.20519 1.40418 1.84337 0.92741 0.95722 1.02426 0.95152 0.91618 0.91442 0.89000 0.82807 0.81222 0.81511 0.81601 0.85915 0.92412 0.83869 0.80031 0.79494 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.10 13.29 21.45 0.28 -59.81 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 48.01 29.54 68.60 2.03 50.03 16 4 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 5 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.52 -32.29 8.51 25.60 0.22 -32.07 16 8 H 0.05 3.41 7.73 -2.91 -0.02 3.38 16 9 C 0.20 12.01 4.58 85.56 0.39 12.40 16 10 N -0.55 -26.41 4.46 -913.18 -4.07 -30.48 16 11 C 0.09 3.75 4.67 86.30 0.40 4.15 16 12 C -0.05 -1.79 5.66 29.85 0.17 -1.62 16 13 C 0.11 3.60 6.18 42.55 0.26 3.86 16 14 C -0.17 -4.05 9.71 22.36 0.22 -3.83 16 15 C -0.07 -1.32 10.18 22.47 0.23 -1.09 16 16 C -0.17 -3.31 10.11 22.36 0.23 -3.08 16 17 C 0.08 2.12 11.18 84.67 0.95 3.07 16 18 N -0.52 -18.16 9.78 -183.89 -1.80 -19.96 16 19 C 0.28 11.15 5.35 170.81 0.91 12.06 16 20 N -0.57 -22.72 2.84 -773.36 -2.19 -24.91 16 21 C 0.56 23.23 7.36 86.82 0.64 23.87 16 22 O -0.50 -24.50 15.89 -3.54 -0.06 -24.56 16 23 C -0.16 -5.07 6.40 -20.00 -0.13 -5.20 16 24 C -0.05 -1.23 10.09 22.44 0.23 -1.00 16 25 C -0.08 -1.07 10.04 22.36 0.22 -0.84 16 26 C -0.08 -0.91 10.04 22.36 0.22 -0.69 16 27 C -0.04 -0.78 10.09 22.44 0.23 -0.55 16 28 C -0.16 -4.49 6.40 -20.00 -0.13 -4.62 16 29 C 0.58 20.61 8.02 86.82 0.70 21.31 16 30 O -0.49 -18.12 17.68 -3.54 -0.06 -18.19 16 31 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 32 H 0.02 1.57 5.20 -2.39 -0.01 1.56 16 33 H -0.04 -2.66 8.01 -2.39 -0.02 -2.68 16 34 H 0.03 1.22 8.00 -2.39 -0.02 1.20 16 35 H 0.07 3.28 6.87 -2.39 -0.02 3.26 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.09 2.77 6.64 -2.39 -0.02 2.76 16 38 H 0.15 2.82 7.95 -2.91 -0.02 2.80 16 39 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.17 3.61 8.06 -2.91 -0.02 3.59 16 42 H 0.12 4.14 6.34 -2.39 -0.02 4.13 16 43 H 0.06 2.42 7.74 -2.39 -0.02 2.41 16 44 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 45 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16 46 H 0.19 0.42 8.06 -2.92 -0.02 0.39 16 47 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -89.49 402.15 1.56 -87.93 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.00 Total: 13.15 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 6.42 Total: 26.79 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -7.78 Total: -135.17 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.12 Total: -42.74 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.03 kcal Total: -89.49 1.56 -87.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013281648.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.018 kcal (2) G-P(sol) polarization free energy of solvation -89.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds