Wall clock time and date at job start Tue Mar 31 2020 05:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50801 * 2 1 4 4 C 1.53102 * 109.50552 * 239.91737 * 2 1 3 5 5 N 1.47019 * 109.25626 * 183.21584 * 4 2 1 6 6 C 1.39919 * 110.99711 * 182.39053 * 5 4 2 7 7 C 1.38878 * 120.00394 * 180.02562 * 6 5 4 8 8 C 1.38066 * 119.99996 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.00297 * 359.97438 * 8 7 6 10 10 N 1.40143 * 119.99755 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99974 * 45.55378 * 10 9 8 12 12 S 1.71203 * 120.00158 * 355.74277 * 11 10 9 13 13 N 1.34776 * 119.99887 * 175.74533 * 11 10 9 14 14 N 1.36596 * 120.00114 * 359.97438 * 13 11 10 15 15 C 1.46906 * 111.00028 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99553 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99906 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99999 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00407 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47253 * 89.99953 * 20 18 16 22 22 H 1.48502 * 109.47497 * 210.00385 * 20 18 16 23 23 H 1.48499 * 109.46942 * 330.00190 * 20 18 16 24 24 C 1.38854 * 120.00899 * 0.27253 * 9 8 7 25 25 C 1.38073 * 119.99704 * 359.45583 * 24 9 8 26 26 C 1.47015 * 110.75098 * 58.61324 * 5 4 2 27 27 C 1.53092 * 109.25759 * 301.38244 * 26 5 4 28 28 H 1.09004 * 109.53984 * 176.80560 * 27 26 5 29 29 C 1.52995 * 109.50654 * 296.91446 * 27 26 5 30 30 O 1.43009 * 109.26238 * 56.85218 * 27 26 5 31 31 H 1.08992 * 109.46885 * 180.08463 * 1 2 3 32 32 H 1.08996 * 109.46926 * 300.08771 * 1 2 3 33 33 H 1.09004 * 109.46972 * 60.08489 * 1 2 3 34 34 H 1.08997 * 109.50966 * 63.28108 * 4 2 1 35 35 H 1.09005 * 109.50268 * 303.15031 * 4 2 1 36 36 H 1.08000 * 120.00151 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.00170 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00152 * 225.54962 * 10 9 8 39 39 H 0.97003 * 120.00323 * 180.02562 * 13 11 10 40 40 H 1.00898 * 111.00091 * 303.95396 * 14 13 11 41 41 H 1.08996 * 109.47118 * 300.00027 * 15 14 13 42 42 H 1.08997 * 109.47208 * 60.00352 * 15 14 13 43 43 H 0.96996 * 120.00517 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.00265 * 179.70727 * 24 9 8 45 45 H 1.08002 * 120.00091 * 180.24997 * 25 24 9 46 46 H 1.09002 * 109.50608 * 61.32223 * 26 5 4 47 47 H 1.09006 * 109.50215 * 181.44584 * 26 5 4 48 48 H 1.09001 * 109.47043 * 179.78506 * 29 27 26 49 49 H 1.08998 * 109.47239 * 299.78135 * 29 27 26 50 50 H 1.08999 * 109.47320 * 59.78655 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7879 -1.2048 6 6 4.0192 -1.3955 -2.3575 7 6 5.3904 -1.5537 -2.5106 8 6 5.8934 -2.1528 -3.6482 9 6 5.0284 -2.5977 -4.6391 10 7 5.5391 -3.2062 -5.7936 11 6 6.5003 -4.1454 -5.6913 12 16 7.1747 -4.5171 -4.1622 13 7 6.9307 -4.7918 -6.7928 14 7 6.3923 -4.4956 -8.0127 15 6 7.0023 -5.3132 -9.0699 16 6 6.3850 -4.9587 -10.3983 17 1 5.6162 -4.2020 -10.4517 18 6 6.8010 -5.6010 -11.5451 19 7 6.2619 -5.2920 -12.7042 20 14 8.1301 -6.9102 -11.4526 21 1 7.5026 -8.2382 -11.2340 22 1 8.8966 -6.9282 -12.7244 23 1 9.0480 -6.6050 -10.3258 24 6 3.6576 -2.4350 -4.4886 25 6 3.1540 -1.8410 -3.3484 26 6 3.9639 -1.4884 0.0051 27 6 3.4335 -0.7573 1.2412 28 1 3.7201 -1.3043 2.1393 29 6 4.0229 0.6537 1.2924 30 8 2.0076 -0.6766 1.1659 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.7273 -0.1786 -2.1391 35 1 1.6331 -1.7338 -1.2767 36 1 6.0633 -1.2073 -1.7401 37 1 6.9597 -2.2761 -3.7672 38 1 5.2007 -2.9516 -6.6663 39 1 7.6223 -5.4680 -6.7192 40 1 5.3897 -4.6078 -8.0024 41 1 8.0745 -5.1207 -9.1051 42 1 6.8292 -6.3683 -8.8586 43 1 6.5548 -5.7436 -13.5111 44 1 2.9852 -2.7768 -5.2614 45 1 2.0876 -1.7181 -3.2295 46 1 3.5866 -2.5110 -0.0029 47 1 5.0536 -1.5020 0.0300 48 1 3.6419 1.1750 2.1706 49 1 5.1096 0.5916 1.3499 50 1 3.7372 1.1997 0.3933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013658690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:11 Heat of formation + Delta-G solvation = 47.058484 kcal Electronic energy + Delta-G solvation = -29794.802946 eV Core-core repulsion = 25756.641543 eV Total energy + Delta-G solvation = -4038.161403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.02692 -39.99190 -38.75824 -36.81696 -34.82356 -33.89975 -33.25651 -31.51393 -31.14320 -30.66880 -28.45367 -27.41626 -27.22004 -25.26585 -23.72499 -23.25630 -22.40266 -21.92962 -21.22374 -19.87559 -19.03854 -18.41003 -17.65972 -16.95124 -16.82966 -16.46870 -15.99790 -15.81150 -15.66508 -15.18288 -15.10769 -14.93981 -14.63543 -14.34009 -14.07229 -13.73389 -13.41992 -13.21491 -12.98522 -12.90558 -12.64533 -12.60479 -12.48338 -12.38546 -12.30160 -12.13367 -11.86684 -11.48917 -11.39308 -11.35603 -11.05932 -10.93571 -10.72794 -10.58615 -10.25188 -10.10148 -9.78716 -9.56712 -9.06930 -8.95849 -8.56466 -7.78232 -7.50327 -7.08665 -6.42206 -4.47205 0.97072 1.40628 1.68784 1.95201 2.79972 3.04762 3.07607 3.12347 3.15878 3.24940 3.37198 3.76280 4.09163 4.33275 4.41855 4.50660 4.65576 4.75476 4.82407 4.86980 4.88328 4.95409 4.99268 5.01854 5.12449 5.15595 5.26780 5.31734 5.34123 5.37865 5.49132 5.52463 5.56543 5.63968 5.70845 5.80998 5.89179 5.93528 5.99755 6.06612 6.19113 6.31927 6.45194 6.54276 6.66862 6.76043 6.83247 6.97956 7.11529 7.19218 7.35935 7.84136 8.17841 8.58893 9.13652 10.69379 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.001714 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.933165 B =16330.402446 C =17220.612654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.071 0.929 4 C 0.019 3.981 5 N -0.483 5.483 6 C 0.108 3.892 7 C -0.132 4.132 8 C -0.041 4.041 9 C 0.108 3.892 10 N -0.625 5.625 11 C 0.572 3.428 12 S -0.659 6.659 13 N -0.510 5.510 14 N -0.458 5.458 15 C 0.149 3.851 16 C -0.532 4.532 17 H 0.085 0.915 18 C 0.080 3.920 19 N -0.884 5.884 20 Si 0.878 3.122 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.026 3.974 27 C 0.089 3.911 28 H 0.108 0.892 29 C -0.177 4.177 30 O -0.376 6.376 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.416 0.584 39 H 0.427 0.573 40 H 0.339 0.661 41 H 0.046 0.954 42 H 0.002 0.998 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.053 0.947 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.294 10.913 24.421 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.089 0.911 4 C -0.108 4.108 5 N -0.199 5.199 6 C 0.011 3.989 7 C -0.154 4.154 8 C -0.065 4.065 9 C 0.014 3.986 10 N -0.253 5.253 11 C 0.209 3.791 12 S -0.531 6.531 13 N -0.228 5.228 14 N -0.185 5.185 15 C 0.022 3.978 16 C -0.571 4.571 17 H 0.103 0.897 18 C -0.126 4.126 19 N -0.520 5.520 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.190 1.190 24 C -0.118 4.118 25 C -0.189 4.189 26 C -0.100 4.100 27 C 0.031 3.969 28 H 0.126 0.874 29 C -0.235 4.235 30 O -0.296 6.296 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.170 0.830 38 H 0.256 0.744 39 H 0.273 0.727 40 H 0.160 0.840 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.081 0.919 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.072 0.928 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.475 11.593 25.122 28.937 hybrid contribution -0.057 -2.302 -1.756 2.896 sum -8.531 9.290 23.366 26.553 Atomic orbital electron populations 1.21752 0.92606 1.03122 1.02801 1.22191 0.94908 0.96038 0.84137 0.91115 1.23015 0.86809 1.01133 0.99882 1.59418 1.09467 1.49584 1.01413 1.18937 0.93636 0.94707 0.91651 1.20552 0.92961 1.02761 0.99128 1.21437 1.01768 0.91209 0.92037 1.17373 0.91994 1.00481 0.88717 1.42072 1.37023 1.36269 1.09905 1.22078 0.84146 0.81973 0.90920 1.93350 1.68602 1.81412 1.09753 1.45095 1.37918 1.37388 1.02386 1.62596 1.09483 1.55239 0.91170 1.20599 0.97051 0.90477 0.89650 1.20620 1.23955 1.24308 0.88196 0.89661 1.24815 0.96155 0.96557 0.95028 1.69845 1.41923 1.41711 0.98551 0.86825 0.82207 0.82132 0.78401 1.19926 1.20511 1.19047 1.20775 0.92929 0.99983 0.98080 1.20923 0.99290 1.03328 0.95322 1.22958 1.01988 0.96223 0.88856 1.22304 0.80744 0.96580 0.97257 0.87378 1.22305 1.01522 0.96846 1.02798 1.88055 1.20732 1.78060 1.42721 0.91759 0.91450 0.90806 0.88943 0.92674 0.85541 0.83046 0.74376 0.72748 0.84005 0.93573 0.98053 0.91938 0.85744 0.85458 0.92849 0.88686 0.92248 0.91451 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.57 37.16 0.36 -0.46 16 2 C 0.09 0.62 3.02 -26.68 -0.08 0.54 16 3 H 0.07 0.51 6.50 -51.93 -0.34 0.17 16 4 C 0.02 0.15 3.62 -3.71 -0.01 0.13 16 5 N -0.48 -4.36 4.14 -170.74 -0.71 -5.07 16 6 C 0.11 1.15 5.64 -83.69 -0.47 0.68 16 7 C -0.13 -1.52 9.19 -39.41 -0.36 -1.88 16 8 C -0.04 -0.55 7.87 -39.42 -0.31 -0.86 16 9 C 0.11 1.40 5.93 -83.60 -0.50 0.90 16 10 N -0.63 -8.31 5.23 -11.35 -0.06 -8.37 16 11 C 0.57 8.84 7.79 -86.92 -0.68 8.16 16 12 S -0.66 -11.78 26.40 -107.50 -2.84 -14.62 16 13 N -0.51 -7.85 5.98 29.96 0.18 -7.67 16 14 N -0.46 -7.69 6.26 -11.40 -0.07 -7.76 16 15 C 0.15 3.04 4.61 -4.97 -0.02 3.01 16 16 C -0.53 -13.25 9.87 -34.44 -0.34 -13.59 16 17 H 0.09 2.29 8.06 -52.49 -0.42 1.86 16 18 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.88 -24.71 13.96 55.43 0.77 -23.94 16 20 Si 0.88 19.36 27.47 -169.99 -4.67 14.69 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 24 C -0.10 -1.07 9.96 -39.41 -0.39 -1.46 16 25 C -0.17 -1.71 8.81 -39.40 -0.35 -2.06 16 26 C 0.03 0.21 4.82 -3.71 -0.02 0.20 16 27 C 0.09 0.66 3.92 -26.69 -0.10 0.56 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 29 C -0.18 -1.18 8.88 37.16 0.33 -0.85 16 30 O -0.38 -3.35 10.28 -35.23 -0.36 -3.71 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.64 7.23 -51.93 -0.38 0.26 16 35 H 0.06 0.46 7.54 -51.93 -0.39 0.07 16 36 H 0.13 1.28 7.20 -52.49 -0.38 0.91 16 37 H 0.15 2.24 6.11 -44.75 -0.27 1.97 16 38 H 0.42 5.03 7.55 -40.82 -0.31 4.73 16 39 H 0.43 6.41 8.32 -185.16 -1.54 4.87 16 40 H 0.34 5.28 8.30 -181.37 -1.51 3.78 16 41 H 0.05 0.96 7.20 -51.93 -0.37 0.59 16 42 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.06 5.81 -52.49 -0.30 0.76 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.74 6.86 -51.93 -0.36 0.39 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.54 6.13 -51.93 -0.32 0.22 16 LS Contribution 403.19 15.07 6.08 6.08 Total: -1.00 -29.67 403.19 -14.55 -44.22 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -9.83 Total: 11.15 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.05 Total: -5.00 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.11 Total: -52.81 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.36 Total: -3.71 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.67 Total: 14.69 kcal Atomic # 16 Polarization: -11.78 SS G_CDS: -2.84 Total: -14.62 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.67 -14.55 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.278 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds