Wall clock time and date at job start Tue Mar 31 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.50801 * 2 1 4 4 C 1.53102 * 109.50552 * 239.91737 * 2 1 3 5 5 N 1.47019 * 109.25626 * 183.21584 * 4 2 1 6 6 C 1.39919 * 110.99711 * 182.39053 * 5 4 2 7 7 C 1.38878 * 120.00394 * 180.02562 * 6 5 4 8 8 C 1.38066 * 119.99996 * 180.02562 * 7 6 5 9 9 C 1.38852 * 120.00297 * 359.97438 * 8 7 6 10 10 N 1.40143 * 119.99755 * 180.02562 * 9 8 7 11 11 C 1.34772 * 119.99974 * 45.55378 * 10 9 8 12 12 S 1.71203 * 120.00158 * 355.74277 * 11 10 9 13 13 N 1.34776 * 119.99887 * 175.74533 * 11 10 9 14 14 N 1.36596 * 120.00114 * 359.97438 * 13 11 10 15 15 C 1.46906 * 111.00028 * 180.02562 * 14 13 11 16 16 C 1.50705 * 109.47184 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99553 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99906 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99999 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00407 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47253 * 89.99953 * 20 18 16 22 22 H 1.48502 * 109.47497 * 210.00385 * 20 18 16 23 23 H 1.48499 * 109.46942 * 330.00190 * 20 18 16 24 24 C 1.38854 * 120.00899 * 0.27253 * 9 8 7 25 25 C 1.38073 * 119.99704 * 359.45583 * 24 9 8 26 26 C 1.47015 * 110.75098 * 58.61324 * 5 4 2 27 27 C 1.53092 * 109.25759 * 301.38244 * 26 5 4 28 28 H 1.09004 * 109.53984 * 176.80560 * 27 26 5 29 29 C 1.52995 * 109.50654 * 296.91446 * 27 26 5 30 30 O 1.43009 * 109.26238 * 56.85218 * 27 26 5 31 31 H 1.08992 * 109.46885 * 180.08463 * 1 2 3 32 32 H 1.08996 * 109.46926 * 300.08771 * 1 2 3 33 33 H 1.09004 * 109.46972 * 60.08489 * 1 2 3 34 34 H 1.08997 * 109.50966 * 63.28108 * 4 2 1 35 35 H 1.09005 * 109.50268 * 303.15031 * 4 2 1 36 36 H 1.08000 * 120.00151 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.00170 * 180.02562 * 8 7 6 38 38 H 0.97002 * 120.00152 * 225.54962 * 10 9 8 39 39 H 0.97003 * 120.00323 * 180.02562 * 13 11 10 40 40 H 1.00898 * 111.00091 * 303.95396 * 14 13 11 41 41 H 1.08996 * 109.47118 * 300.00027 * 15 14 13 42 42 H 1.08997 * 109.47208 * 60.00352 * 15 14 13 43 43 H 0.96996 * 120.00517 * 179.97438 * 19 18 16 44 44 H 1.07995 * 120.00265 * 179.70727 * 24 9 8 45 45 H 1.08002 * 120.00091 * 180.24997 * 25 24 9 46 46 H 1.09002 * 109.50608 * 61.32223 * 26 5 4 47 47 H 1.09006 * 109.50215 * 181.44584 * 26 5 4 48 48 H 1.09001 * 109.47043 * 179.78506 * 29 27 26 49 49 H 1.08998 * 109.47239 * 299.78135 * 29 27 26 50 50 H 1.08999 * 109.47320 * 59.78655 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7234 -1.2488 5 7 3.5093 -0.7879 -1.2048 6 6 4.0192 -1.3955 -2.3575 7 6 5.3904 -1.5537 -2.5106 8 6 5.8934 -2.1528 -3.6482 9 6 5.0284 -2.5977 -4.6391 10 7 5.5391 -3.2062 -5.7936 11 6 6.5003 -4.1454 -5.6913 12 16 7.1747 -4.5171 -4.1622 13 7 6.9307 -4.7918 -6.7928 14 7 6.3923 -4.4956 -8.0127 15 6 7.0023 -5.3132 -9.0699 16 6 6.3850 -4.9587 -10.3983 17 1 5.6162 -4.2020 -10.4517 18 6 6.8010 -5.6010 -11.5451 19 7 6.2619 -5.2920 -12.7042 20 14 8.1301 -6.9102 -11.4526 21 1 7.5026 -8.2382 -11.2340 22 1 8.8966 -6.9282 -12.7244 23 1 9.0480 -6.6050 -10.3258 24 6 3.6576 -2.4350 -4.4886 25 6 3.1540 -1.8410 -3.3484 26 6 3.9639 -1.4884 0.0051 27 6 3.4335 -0.7573 1.2412 28 1 3.7201 -1.3043 2.1393 29 6 4.0229 0.6537 1.2924 30 8 2.0076 -0.6766 1.1659 31 1 -0.3633 -1.0276 0.0015 32 1 -0.3633 0.5152 0.8892 33 1 -0.3633 0.5125 -0.8908 34 1 1.7273 -0.1786 -2.1391 35 1 1.6331 -1.7338 -1.2767 36 1 6.0633 -1.2073 -1.7401 37 1 6.9597 -2.2761 -3.7672 38 1 5.2007 -2.9516 -6.6663 39 1 7.6223 -5.4680 -6.7192 40 1 5.3897 -4.6078 -8.0024 41 1 8.0745 -5.1207 -9.1051 42 1 6.8292 -6.3683 -8.8586 43 1 6.5548 -5.7436 -13.5111 44 1 2.9852 -2.7768 -5.2614 45 1 2.0876 -1.7181 -3.2295 46 1 3.5866 -2.5110 -0.0029 47 1 5.0536 -1.5020 0.0300 48 1 3.6419 1.1750 2.1706 49 1 5.1096 0.5916 1.3499 50 1 3.7372 1.1997 0.3933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013658690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:09 Heat of formation + Delta-G solvation = 29.291140 kcal Electronic energy + Delta-G solvation = -29795.573396 eV Core-core repulsion = 25756.641543 eV Total energy + Delta-G solvation = -4038.931853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80314 -41.04596 -39.75491 -37.81140 -35.91092 -34.93876 -34.46020 -32.97291 -32.03252 -31.36267 -29.45684 -28.74429 -28.00991 -26.05443 -24.71485 -24.17303 -23.97395 -22.75672 -22.19334 -20.55257 -20.27269 -19.68283 -18.66597 -18.47848 -17.59931 -17.44944 -17.13740 -16.76888 -16.54122 -16.36770 -16.13610 -15.83841 -15.73011 -15.40074 -14.89859 -14.75835 -14.60349 -14.38035 -14.15984 -13.95295 -13.62740 -13.35351 -13.27661 -13.13236 -13.09763 -12.91222 -12.77656 -12.72080 -12.47393 -12.40296 -12.20047 -12.02288 -11.95377 -11.77347 -11.61305 -11.30577 -10.94948 -10.84050 -10.35240 -10.00105 -9.76295 -8.89018 -8.76631 -8.40281 -8.34846 -6.49151 -0.09712 0.50506 0.55551 0.68191 1.32974 1.36067 1.43612 1.59782 1.86139 2.25430 2.51726 2.78524 2.89656 2.94264 3.65686 3.72594 3.79072 3.84575 4.02303 4.05584 4.10178 4.19308 4.37351 4.38743 4.40252 4.42373 4.45054 4.54372 4.57035 4.65295 4.67264 4.70401 4.78565 4.89037 4.97370 4.98896 5.05188 5.10591 5.12833 5.24277 5.27275 5.30947 5.38765 5.40239 5.53010 5.72911 5.85014 5.93947 6.01800 6.15480 6.25176 6.31820 6.58469 6.66167 7.15420 8.74663 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.001714 C = 0.001626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.933165 B =16330.402446 C =17220.612654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.072 0.928 4 C 0.018 3.982 5 N -0.484 5.484 6 C 0.112 3.888 7 C -0.137 4.137 8 C -0.053 4.053 9 C 0.084 3.916 10 N -0.609 5.609 11 C 0.584 3.416 12 S -0.704 6.704 13 N -0.505 5.505 14 N -0.454 5.454 15 C 0.158 3.842 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.021 3.979 19 N -0.934 5.934 20 Si 0.943 3.057 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.246 1.246 24 C -0.092 4.092 25 C -0.166 4.166 26 C 0.027 3.973 27 C 0.088 3.912 28 H 0.120 0.880 29 C -0.171 4.171 30 O -0.393 6.393 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.423 0.577 39 H 0.431 0.569 40 H 0.348 0.652 41 H 0.049 0.951 42 H 0.015 0.985 43 H 0.271 0.729 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.041 0.959 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 10.985 25.807 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.090 0.910 4 C -0.109 4.109 5 N -0.199 5.199 6 C 0.014 3.986 7 C -0.159 4.159 8 C -0.076 4.076 9 C -0.010 4.010 10 N -0.236 5.236 11 C 0.219 3.781 12 S -0.577 6.577 13 N -0.224 5.224 14 N -0.181 5.181 15 C 0.030 3.970 16 C -0.572 4.572 17 H 0.072 0.928 18 C -0.179 4.179 19 N -0.573 5.573 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.169 1.169 24 C -0.113 4.113 25 C -0.188 4.188 26 C -0.099 4.099 27 C 0.031 3.969 28 H 0.138 0.862 29 C -0.229 4.229 30 O -0.312 6.312 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.264 0.736 39 H 0.277 0.723 40 H 0.169 0.831 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.161 0.839 45 H 0.168 0.832 46 H 0.060 0.940 47 H 0.116 0.884 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.044 11.702 26.546 30.388 hybrid contribution -0.024 -2.172 -2.090 3.014 sum -9.069 9.531 24.456 27.770 Atomic orbital electron populations 1.21763 0.91340 1.03140 1.03728 1.22299 0.95894 0.95790 0.83407 0.91011 1.23096 0.85802 1.01194 1.00769 1.59409 1.10375 1.49073 1.01035 1.19083 0.93390 0.93865 0.92301 1.20636 0.93752 1.02735 0.98799 1.21306 1.00922 0.92379 0.92987 1.17564 0.92854 1.01811 0.88749 1.42067 1.35867 1.35048 1.10602 1.21762 0.84350 0.82169 0.89858 1.93438 1.70101 1.82641 1.11479 1.44882 1.38139 1.37741 1.01656 1.62385 1.09967 1.54525 0.91183 1.20320 0.96800 0.91403 0.88447 1.20872 1.22961 1.22945 0.90437 0.92827 1.25701 0.98569 0.98994 0.94632 1.69988 1.44111 1.43684 0.99489 0.85782 0.79530 0.79298 0.78751 1.19186 1.20929 1.16919 1.20988 0.92281 0.99310 0.98729 1.21211 1.00427 1.02436 0.94712 1.22973 1.02224 0.95660 0.89031 1.22403 0.80297 0.97072 0.97169 0.86209 1.22246 1.01928 0.96173 1.02507 1.88043 1.21394 1.78337 1.43444 0.92155 0.91334 0.89116 0.87770 0.93034 0.84727 0.85019 0.73568 0.72292 0.83058 0.93336 0.96728 0.91952 0.83913 0.83221 0.94036 0.88356 0.91800 0.90741 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.57 71.98 0.69 -0.64 16 2 C 0.08 1.08 3.02 30.63 0.09 1.17 16 3 H 0.07 0.91 6.50 -2.38 -0.02 0.90 16 4 C 0.02 0.25 3.62 86.31 0.31 0.56 16 5 N -0.48 -7.99 4.14 -694.09 -2.88 -10.87 16 6 C 0.11 2.21 5.64 38.16 0.22 2.43 16 7 C -0.14 -3.08 9.19 22.38 0.21 -2.87 16 8 C -0.05 -1.40 7.87 22.38 0.18 -1.22 16 9 C 0.08 2.09 5.93 38.11 0.23 2.31 16 10 N -0.61 -15.59 5.23 -189.83 -0.99 -16.59 16 11 C 0.58 17.54 7.79 179.06 1.39 18.94 16 12 S -0.70 -25.07 26.40 -56.49 -1.49 -26.56 16 13 N -0.51 -14.84 5.98 -59.12 -0.35 -15.19 16 14 N -0.45 -14.58 6.26 -190.00 -1.19 -15.77 16 15 C 0.16 6.16 4.61 85.56 0.39 6.55 16 16 C -0.53 -26.48 9.87 25.60 0.25 -26.23 16 17 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 18 C 0.02 1.11 5.47 84.65 0.46 1.57 16 19 N -0.93 -53.13 13.96 21.45 0.30 -52.83 16 20 Si 0.94 39.11 27.47 68.60 1.88 41.00 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.25 -9.31 6.54 99.48 0.65 -8.66 16 24 C -0.09 -1.88 9.96 22.38 0.22 -1.65 16 25 C -0.17 -3.07 8.81 22.39 0.20 -2.87 16 26 C 0.03 0.42 4.82 86.31 0.42 0.84 16 27 C 0.09 1.20 3.92 30.62 0.12 1.32 16 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 29 C -0.17 -2.03 8.88 71.98 0.64 -1.39 16 30 O -0.39 -6.44 10.28 -148.98 -1.53 -7.97 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 1.16 7.23 -2.39 -0.02 1.15 16 35 H 0.05 0.76 7.54 -2.38 -0.02 0.74 16 36 H 0.13 2.68 7.20 -2.91 -0.02 2.66 16 37 H 0.13 4.00 6.11 -7.83 -0.05 3.95 16 38 H 0.42 9.69 7.55 -92.71 -0.70 8.99 16 39 H 0.43 12.23 8.32 -215.49 -1.79 10.44 16 40 H 0.35 10.34 8.30 -210.56 -1.75 8.59 16 41 H 0.05 1.91 7.20 -2.39 -0.02 1.89 16 42 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 43 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.15 2.06 5.81 -2.91 -0.02 2.05 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 1.45 6.86 -2.38 -0.02 1.44 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.86 6.13 -2.39 -0.01 0.85 16 Total: -1.00 -63.98 403.19 -3.57 -67.55 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -3.33 Total: 38.43 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.02 Total: -1.19 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -5.11 Total: -111.25 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -1.53 Total: -7.97 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 41.00 kcal Atomic # 16 Polarization: -25.07 SS G_CDS: -1.49 Total: -26.56 kcal Total: -63.98 -3.57 -67.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.840 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds