Wall clock time and date at job start Tue Mar 31 2020 05:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.50600 * 2 1 4 4 C 1.53099 * 109.50542 * 239.87117 * 2 1 3 5 5 N 1.47015 * 109.25903 * 183.21567 * 4 2 1 6 6 C 1.39958 * 111.00352 * 182.38943 * 5 4 2 7 7 C 1.38878 * 119.99931 * 56.36636 * 6 5 4 8 8 C 1.38071 * 120.00713 * 180.02562 * 7 6 5 9 9 C 1.38887 * 119.99553 * 359.97438 * 8 7 6 10 10 N 1.40025 * 120.00072 * 179.97438 * 9 8 7 11 11 C 1.38915 * 119.99762 * 133.05091 * 10 9 8 12 12 S 1.76200 * 120.00087 * 353.84681 * 11 10 9 13 13 N 1.29974 * 119.99662 * 173.84494 * 11 10 9 14 14 N 1.40099 * 120.00099 * 0.02562 * 13 11 10 15 15 C 1.46506 * 119.99700 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46800 * 180.02562 * 15 14 13 17 17 H 1.07989 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99676 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00030 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46838 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47289 * 119.99539 * 20 18 16 23 23 H 1.48505 * 109.47061 * 239.99768 * 20 18 16 24 24 C 1.38886 * 119.99718 * 0.26061 * 9 8 7 25 25 C 1.38078 * 119.99960 * 359.46295 * 24 9 8 26 26 C 1.47021 * 110.75121 * 58.61313 * 5 4 2 27 27 C 1.53093 * 109.25765 * 301.38669 * 26 5 4 28 28 H 1.08999 * 109.50519 * 296.91337 * 27 26 5 29 29 C 1.52999 * 109.50702 * 176.82640 * 27 26 5 30 30 O 1.43013 * 109.26227 * 56.85071 * 27 26 5 31 31 H 1.08993 * 109.47021 * 299.90867 * 1 2 3 32 32 H 1.08994 * 109.46917 * 59.91564 * 1 2 3 33 33 H 1.09002 * 109.46714 * 179.91613 * 1 2 3 34 34 H 1.08998 * 109.51061 * 63.28411 * 4 2 1 35 35 H 1.09000 * 109.50790 * 303.14441 * 4 2 1 36 36 H 1.08009 * 119.99634 * 0.02562 * 7 6 5 37 37 H 1.07994 * 120.00542 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99935 * 313.05647 * 10 9 8 39 39 H 1.34506 * 103.00037 * 354.39268 * 12 11 10 40 40 H 0.96986 * 120.00141 * 359.97438 * 14 13 11 41 41 H 1.08999 * 109.47531 * 300.00163 * 15 14 13 42 42 H 1.09004 * 109.46823 * 60.00548 * 15 14 13 43 43 H 0.97002 * 120.00004 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.99890 * 179.74698 * 24 9 8 45 45 H 1.07994 * 119.99940 * 180.27880 * 25 24 9 46 46 H 1.08996 * 109.50426 * 61.32605 * 26 5 4 47 47 H 1.08997 * 109.50397 * 181.40917 * 26 5 4 48 48 H 1.09014 * 109.47161 * 59.99783 * 29 27 26 49 49 H 1.08998 * 109.47802 * 179.97438 * 29 27 26 50 50 H 1.09003 * 109.47206 * 300.00374 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2042 6 6 4.0194 -1.3976 -2.3567 7 6 3.7058 -0.8859 -3.6091 8 6 4.2084 -1.4866 -4.7461 9 6 5.0282 -2.6024 -4.6373 10 7 5.5376 -3.2120 -5.7904 11 6 6.8838 -3.5475 -5.8617 12 16 7.9823 -3.0620 -4.5725 13 7 7.3329 -4.2196 -6.8795 14 7 6.4595 -4.6052 -7.9048 15 6 6.9660 -5.3623 -9.0523 16 6 5.8334 -5.6491 -10.0043 17 1 4.8364 -5.3017 -9.7775 18 6 6.0703 -6.3548 -11.1648 19 7 7.2847 -6.7774 -11.4412 20 14 4.6667 -6.7097 -12.3452 21 1 3.4095 -6.1302 -11.8077 22 1 4.9663 -6.1031 -13.6671 23 1 4.5083 -8.1782 -12.4988 24 6 5.3379 -3.1171 -3.3851 25 6 4.8397 -2.5129 -2.2478 26 6 3.9640 -1.4884 0.0063 27 6 3.4335 -0.7564 1.2418 28 1 3.8534 0.2489 1.2775 29 6 3.8367 -1.5236 2.5026 30 8 2.0076 -0.6758 1.1665 31 1 -0.3633 0.5124 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7274 -0.1803 -2.1390 35 1 1.6332 -1.7348 -1.2753 36 1 3.0686 -0.0179 -3.6936 37 1 3.9642 -1.0889 -5.7200 38 1 4.9506 -3.4000 -6.5393 39 1 7.2050 -2.2978 -3.7844 40 1 5.5197 -4.3710 -7.8550 41 1 7.7311 -4.7784 -9.5638 42 1 7.3968 -6.3019 -8.7061 43 1 7.4515 -7.2736 -12.2578 44 1 5.9720 -3.9873 -3.3006 45 1 5.0842 -2.9104 -1.2739 46 1 3.5867 -2.5110 -0.0009 47 1 5.0536 -1.5026 0.0308 48 1 4.9236 -1.5873 2.5572 49 1 3.4592 -1.0017 3.3819 50 1 3.4153 -2.5282 2.4670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013658696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:03 Heat of formation + Delta-G solvation = 56.241799 kcal Electronic energy + Delta-G solvation = -29609.879562 eV Core-core repulsion = 25572.116378 eV Total energy + Delta-G solvation = -4037.763185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.05448 -39.54515 -37.65784 -36.00466 -34.33112 -34.05959 -32.80898 -31.45036 -30.98618 -30.39908 -28.22758 -27.43574 -26.26990 -24.98954 -23.58250 -22.66984 -22.05904 -21.79796 -20.84483 -20.64875 -18.60826 -17.91082 -17.15062 -17.09754 -16.73786 -16.33879 -16.10656 -15.96937 -15.54012 -14.91742 -14.69925 -14.51824 -14.46956 -14.14044 -13.96214 -13.46060 -13.33447 -13.20625 -13.07346 -12.81832 -12.72317 -12.54028 -12.47182 -12.34882 -12.11298 -12.06495 -12.01766 -11.50696 -11.35022 -11.02391 -10.97130 -10.93466 -10.84871 -10.43546 -10.25421 -10.02640 -9.82693 -9.34933 -9.33676 -9.20666 -8.71725 -8.35042 -7.75885 -6.38328 -6.18426 -4.23780 0.97256 1.04501 1.38749 2.56317 2.78365 3.07228 3.16592 3.22185 3.26992 3.30385 3.34086 3.51128 4.16376 4.23802 4.30188 4.39595 4.50712 4.56007 4.61138 4.62645 4.67094 4.84366 4.90003 4.98329 5.03506 5.06502 5.07716 5.17169 5.18280 5.20599 5.31544 5.40264 5.40843 5.54914 5.60324 5.68214 5.70646 5.77990 5.84525 6.11945 6.29490 6.38110 6.51663 6.73410 6.81041 7.12500 7.32498 7.49586 7.59399 7.75636 8.06360 8.19099 8.84977 9.30146 9.41756 10.92016 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.001762 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.682557 B =15885.574762 C =17168.525671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.068 0.932 4 C 0.026 3.974 5 N -0.486 5.486 6 C 0.084 3.916 7 C -0.111 4.111 8 C -0.120 4.120 9 C 0.137 3.863 10 N -0.704 5.704 11 C 0.239 3.761 12 S -0.033 6.033 13 N -0.231 5.231 14 N -0.635 5.635 15 C 0.288 3.712 16 C -0.537 4.537 17 H 0.060 0.940 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.138 4.138 25 C -0.142 4.142 26 C 0.018 3.982 27 C 0.090 3.910 28 H 0.068 0.932 29 C -0.145 4.145 30 O -0.378 6.378 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.053 0.947 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.365 0.635 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.056 0.944 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.068 0.932 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.444 14.982 27.388 32.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.032 3.968 3 H 0.086 0.914 4 C -0.100 4.100 5 N -0.202 5.202 6 C -0.013 4.013 7 C -0.132 4.132 8 C -0.142 4.142 9 C 0.038 3.962 10 N -0.346 5.346 11 C -0.150 4.150 12 S 0.117 5.883 13 N -0.051 5.051 14 N -0.376 5.376 15 C 0.167 3.833 16 C -0.577 4.577 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.523 5.523 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.109 4.109 27 C 0.032 3.968 28 H 0.086 0.914 29 C -0.203 4.203 30 O -0.298 6.298 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.246 0.754 39 H 0.053 0.947 40 H 0.200 0.800 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.074 0.926 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.087 0.913 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.496 14.903 27.494 32.407 hybrid contribution -3.408 -0.292 -1.365 3.683 sum -11.904 14.611 26.128 32.216 Atomic orbital electron populations 1.21752 0.92375 1.03222 1.02912 1.22171 0.95118 0.95595 0.83961 0.91380 1.23002 0.85742 1.01238 1.00039 1.59463 1.09393 1.50268 1.01100 1.18845 0.98881 0.93364 0.90251 1.20586 1.02008 1.00381 0.90252 1.21005 1.00130 0.94048 0.99043 1.17784 0.98176 0.93364 0.86872 1.42626 1.07435 1.67339 1.17235 1.23551 0.83999 1.06714 1.00695 1.85962 1.15089 1.63479 1.23812 1.74577 1.22895 1.10530 0.97105 1.48315 1.06315 1.63361 1.19604 1.18869 0.95048 0.89788 0.79635 1.21192 0.94801 1.36543 1.05129 0.92183 1.24904 0.96055 0.95267 0.97669 1.69977 1.19806 1.36926 1.25620 0.86349 0.81766 0.78102 0.80604 1.19770 1.20752 1.20764 1.21440 1.02608 1.00711 0.91329 1.21116 1.01159 0.95359 0.98792 1.23028 1.01732 0.96826 0.89315 1.22162 0.81285 0.99172 0.94183 0.91413 1.21755 1.01617 1.00807 0.96080 1.88010 1.20828 1.78382 1.42583 0.91316 0.90723 0.91696 0.88984 0.92877 0.85457 0.85263 0.75410 0.94701 0.79964 0.96360 0.96408 0.92494 0.84454 0.85173 0.92591 0.88872 0.90678 0.91333 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.57 37.16 0.36 -0.42 16 2 C 0.09 0.62 3.43 -26.68 -0.09 0.53 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.03 0.19 4.69 -3.71 -0.02 0.18 16 5 N -0.49 -4.18 4.78 -170.74 -0.82 -4.99 16 6 C 0.08 0.83 5.64 -83.67 -0.47 0.36 16 7 C -0.11 -1.10 9.19 -39.41 -0.36 -1.46 16 8 C -0.12 -1.34 9.96 -39.40 -0.39 -1.73 16 9 C 0.14 1.75 5.48 -83.63 -0.46 1.30 16 10 N -0.70 -10.57 5.39 -10.21 -0.06 -10.63 16 11 C 0.24 4.13 7.87 -87.15 -0.69 3.44 16 12 S -0.03 -0.47 24.25 -107.50 -2.61 -3.08 16 13 N -0.23 -4.87 11.53 30.94 0.36 -4.52 16 14 N -0.64 -14.37 6.59 -11.65 -0.08 -14.45 16 15 C 0.29 7.71 6.42 -5.19 -0.03 7.68 16 16 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 17 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 18 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.14 -1.63 6.80 -39.40 -0.27 -1.90 16 25 C -0.14 -1.43 8.81 -39.40 -0.35 -1.78 16 26 C 0.02 0.14 3.62 -3.71 -0.01 0.12 16 27 C 0.09 0.63 3.42 -26.68 -0.09 0.53 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 C -0.15 -0.76 9.57 37.16 0.36 -0.40 16 30 O -0.38 -3.20 10.11 -35.23 -0.36 -3.55 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.60 6.86 -51.93 -0.36 0.25 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.13 1.03 7.20 -52.48 -0.38 0.66 16 37 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.41 6.13 6.73 -40.82 -0.27 5.85 16 39 H 0.09 1.11 5.78 97.61 0.56 1.67 16 40 H 0.36 7.51 6.24 -182.61 -1.14 6.37 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.14 1.67 6.90 -52.48 -0.36 1.30 16 45 H 0.13 1.08 5.81 -52.49 -0.30 0.77 16 46 H 0.06 0.44 7.54 -51.93 -0.39 0.05 16 47 H 0.09 0.62 7.22 -51.93 -0.38 0.25 16 48 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -30.90 409.83 -12.23 -43.13 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.62 Total: 8.02 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.94 Total: -6.95 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.15 Total: -59.72 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -0.36 Total: -3.55 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.61 Total: -3.08 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.90 -12.23 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.370 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds