Wall clock time and date at job start Tue Mar 31 2020 05:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.50600 * 2 1 4 4 C 1.53099 * 109.50542 * 239.87117 * 2 1 3 5 5 N 1.47015 * 109.25903 * 183.21567 * 4 2 1 6 6 C 1.39958 * 111.00352 * 182.38943 * 5 4 2 7 7 C 1.38878 * 119.99931 * 56.36636 * 6 5 4 8 8 C 1.38071 * 120.00713 * 180.02562 * 7 6 5 9 9 C 1.38887 * 119.99553 * 359.97438 * 8 7 6 10 10 N 1.40025 * 120.00072 * 179.97438 * 9 8 7 11 11 C 1.38915 * 119.99762 * 133.05091 * 10 9 8 12 12 S 1.76200 * 120.00087 * 353.84681 * 11 10 9 13 13 N 1.29974 * 119.99662 * 173.84494 * 11 10 9 14 14 N 1.40099 * 120.00099 * 0.02562 * 13 11 10 15 15 C 1.46506 * 119.99700 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46800 * 180.02562 * 15 14 13 17 17 H 1.07989 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99676 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00028 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00030 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46838 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47289 * 119.99539 * 20 18 16 23 23 H 1.48505 * 109.47061 * 239.99768 * 20 18 16 24 24 C 1.38886 * 119.99718 * 0.26061 * 9 8 7 25 25 C 1.38078 * 119.99960 * 359.46295 * 24 9 8 26 26 C 1.47021 * 110.75121 * 58.61313 * 5 4 2 27 27 C 1.53093 * 109.25765 * 301.38669 * 26 5 4 28 28 H 1.08999 * 109.50519 * 296.91337 * 27 26 5 29 29 C 1.52999 * 109.50702 * 176.82640 * 27 26 5 30 30 O 1.43013 * 109.26227 * 56.85071 * 27 26 5 31 31 H 1.08993 * 109.47021 * 299.90867 * 1 2 3 32 32 H 1.08994 * 109.46917 * 59.91564 * 1 2 3 33 33 H 1.09002 * 109.46714 * 179.91613 * 1 2 3 34 34 H 1.08998 * 109.51061 * 63.28411 * 4 2 1 35 35 H 1.09000 * 109.50790 * 303.14441 * 4 2 1 36 36 H 1.08009 * 119.99634 * 0.02562 * 7 6 5 37 37 H 1.07994 * 120.00542 * 179.97438 * 8 7 6 38 38 H 0.96999 * 119.99935 * 313.05647 * 10 9 8 39 39 H 1.34506 * 103.00037 * 354.39268 * 12 11 10 40 40 H 0.96986 * 120.00141 * 359.97438 * 14 13 11 41 41 H 1.08999 * 109.47531 * 300.00163 * 15 14 13 42 42 H 1.09004 * 109.46823 * 60.00548 * 15 14 13 43 43 H 0.97002 * 120.00004 * 180.02562 * 19 18 16 44 44 H 1.08004 * 119.99890 * 179.74698 * 24 9 8 45 45 H 1.07994 * 119.99940 * 180.27880 * 25 24 9 46 46 H 1.08996 * 109.50426 * 61.32605 * 26 5 4 47 47 H 1.08997 * 109.50397 * 181.40917 * 26 5 4 48 48 H 1.09014 * 109.47161 * 59.99783 * 29 27 26 49 49 H 1.08998 * 109.47802 * 179.97438 * 29 27 26 50 50 H 1.09003 * 109.47206 * 300.00374 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2042 6 6 4.0194 -1.3976 -2.3567 7 6 3.7058 -0.8859 -3.6091 8 6 4.2084 -1.4866 -4.7461 9 6 5.0282 -2.6024 -4.6373 10 7 5.5376 -3.2120 -5.7904 11 6 6.8838 -3.5475 -5.8617 12 16 7.9823 -3.0620 -4.5725 13 7 7.3329 -4.2196 -6.8795 14 7 6.4595 -4.6052 -7.9048 15 6 6.9660 -5.3623 -9.0523 16 6 5.8334 -5.6491 -10.0043 17 1 4.8364 -5.3017 -9.7775 18 6 6.0703 -6.3548 -11.1648 19 7 7.2847 -6.7774 -11.4412 20 14 4.6667 -6.7097 -12.3452 21 1 3.4095 -6.1302 -11.8077 22 1 4.9663 -6.1031 -13.6671 23 1 4.5083 -8.1782 -12.4988 24 6 5.3379 -3.1171 -3.3851 25 6 4.8397 -2.5129 -2.2478 26 6 3.9640 -1.4884 0.0063 27 6 3.4335 -0.7564 1.2418 28 1 3.8534 0.2489 1.2775 29 6 3.8367 -1.5236 2.5026 30 8 2.0076 -0.6758 1.1665 31 1 -0.3633 0.5124 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3633 -1.0277 -0.0015 34 1 1.7274 -0.1803 -2.1390 35 1 1.6332 -1.7348 -1.2753 36 1 3.0686 -0.0179 -3.6936 37 1 3.9642 -1.0889 -5.7200 38 1 4.9506 -3.4000 -6.5393 39 1 7.2050 -2.2978 -3.7844 40 1 5.5197 -4.3710 -7.8550 41 1 7.7311 -4.7784 -9.5638 42 1 7.3968 -6.3019 -8.7061 43 1 7.4515 -7.2736 -12.2578 44 1 5.9720 -3.9873 -3.3006 45 1 5.0842 -2.9104 -1.2739 46 1 3.5867 -2.5110 -0.0009 47 1 5.0536 -1.5026 0.0308 48 1 4.9236 -1.5873 2.5572 49 1 3.4592 -1.0017 3.3819 50 1 3.4153 -2.5282 2.4670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013658696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:02 Heat of formation + Delta-G solvation = 36.868051 kcal Electronic energy + Delta-G solvation = -29610.719671 eV Core-core repulsion = 25572.116378 eV Total energy + Delta-G solvation = -4038.603293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.77911 -40.40238 -38.79611 -37.07751 -35.65761 -34.83557 -34.43079 -32.35012 -32.27932 -31.29767 -29.18201 -28.15276 -27.96168 -25.71832 -24.82281 -24.05376 -22.96007 -22.61337 -21.97858 -21.44603 -19.95343 -19.07384 -18.22819 -17.98788 -17.89012 -17.64765 -16.91937 -16.76725 -16.61432 -16.22037 -15.81132 -15.45797 -15.24134 -15.11389 -14.95732 -14.82815 -14.62812 -14.18369 -14.04461 -13.87139 -13.69613 -13.50096 -13.41253 -13.06423 -12.93237 -12.87357 -12.81657 -12.78507 -12.61077 -12.27137 -12.20303 -11.98122 -11.96051 -11.61251 -11.54405 -11.38990 -11.18010 -10.87478 -10.60541 -10.30366 -10.08067 -9.67688 -8.72723 -8.29490 -7.94821 -6.44199 -0.01170 0.12609 0.21781 1.36841 1.40050 1.41626 1.42569 1.54895 2.00151 2.34274 2.36642 2.63029 2.70369 2.97553 3.05127 3.58528 3.67359 3.80106 3.81916 3.97877 4.02301 4.07311 4.19515 4.31788 4.35515 4.38425 4.39660 4.55187 4.58184 4.60174 4.70737 4.78464 4.88258 4.91498 4.94385 4.96426 5.04772 5.08664 5.17974 5.22134 5.27174 5.28811 5.37671 5.47084 5.59974 5.78948 5.88220 5.93099 6.08570 6.20546 6.31352 6.35372 6.78424 7.27600 7.74081 8.82906 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.001762 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.682557 B =15885.574762 C =17168.525671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.088 3.912 3 H 0.071 0.929 4 C 0.027 3.973 5 N -0.489 5.489 6 C 0.092 3.908 7 C -0.110 4.110 8 C -0.117 4.117 9 C 0.107 3.893 10 N -0.703 5.703 11 C 0.269 3.731 12 S -0.009 6.009 13 N -0.292 5.292 14 N -0.647 5.647 15 C 0.310 3.690 16 C -0.553 4.553 17 H 0.071 0.929 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.983 3.017 21 H -0.260 1.260 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.142 4.142 25 C -0.142 4.142 26 C 0.017 3.983 27 C 0.088 3.912 28 H 0.069 0.931 29 C -0.142 4.142 30 O -0.395 6.395 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.043 0.957 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.405 0.595 39 H 0.107 0.893 40 H 0.371 0.629 41 H -0.017 1.017 42 H -0.018 1.018 43 H 0.270 0.730 44 H 0.132 0.868 45 H 0.149 0.851 46 H 0.052 0.948 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.069 0.931 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 16.639 29.158 35.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 H 0.089 0.911 4 C -0.099 4.099 5 N -0.205 5.205 6 C -0.007 4.007 7 C -0.131 4.131 8 C -0.139 4.139 9 C 0.010 3.990 10 N -0.345 5.345 11 C -0.119 4.119 12 S 0.141 5.859 13 N -0.113 5.113 14 N -0.389 5.389 15 C 0.186 3.814 16 C -0.592 4.592 17 H 0.089 0.911 18 C -0.191 4.191 19 N -0.564 5.564 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.164 4.164 25 C -0.164 4.164 26 C -0.110 4.110 27 C 0.031 3.969 28 H 0.087 0.913 29 C -0.200 4.200 30 O -0.315 6.315 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.243 0.757 39 H 0.071 0.929 40 H 0.209 0.791 41 H 0.001 0.999 42 H 0.000 1.000 43 H 0.079 0.921 44 H 0.149 0.851 45 H 0.167 0.833 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.109 0.891 49 H 0.088 0.912 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.578 16.607 29.344 35.338 hybrid contribution -2.815 -0.601 -1.544 3.266 sum -13.393 16.006 27.800 34.762 Atomic orbital electron populations 1.21761 0.91265 1.03097 1.03834 1.22278 0.96020 0.95420 0.83265 0.91117 1.23050 0.84870 1.00987 1.00971 1.59477 1.10062 1.49927 1.00985 1.19043 0.98001 0.92756 0.90856 1.20806 1.01827 1.00748 0.89721 1.21120 0.99282 0.93474 0.99994 1.17974 1.00085 0.94683 0.86276 1.42700 1.06576 1.67116 1.18115 1.24233 0.85497 1.02626 0.99592 1.85962 1.14171 1.63295 1.22469 1.74599 1.23218 1.14829 0.98633 1.47636 1.06596 1.64728 1.19895 1.18265 0.94231 0.88037 0.80826 1.21518 0.95268 1.36781 1.05609 0.91117 1.25955 0.98915 0.94719 0.99546 1.70119 1.22264 1.37616 1.26432 0.85140 0.78369 0.78008 0.77834 1.18418 1.20119 1.20200 1.21436 1.02783 1.00713 0.91494 1.21296 1.00802 0.95245 0.99029 1.23097 1.02326 0.96544 0.89009 1.22264 0.80706 0.99383 0.94592 0.91341 1.21764 1.02637 1.00239 0.95311 1.88006 1.21664 1.78621 1.43254 0.91149 0.89085 0.92312 0.87775 0.93827 0.83360 0.84554 0.75658 0.92930 0.79147 0.99908 1.00023 0.92149 0.85062 0.83348 0.92992 0.87908 0.89088 0.91221 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 71.98 0.69 -0.54 16 2 C 0.09 1.04 3.43 30.63 0.10 1.15 16 3 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 4 C 0.03 0.34 4.69 86.31 0.41 0.74 16 5 N -0.49 -7.09 4.78 -694.09 -3.32 -10.41 16 6 C 0.09 1.56 5.64 38.15 0.22 1.77 16 7 C -0.11 -1.86 9.19 22.38 0.21 -1.66 16 8 C -0.12 -2.38 9.96 22.39 0.22 -2.15 16 9 C 0.11 2.59 5.48 38.14 0.21 2.80 16 10 N -0.70 -20.94 5.39 -186.21 -1.00 -21.94 16 11 C 0.27 9.37 7.87 179.14 1.41 10.78 16 12 S -0.01 -0.24 24.25 -56.49 -1.37 -1.61 16 13 N -0.29 -12.83 11.53 -56.04 -0.65 -13.47 16 14 N -0.65 -30.73 6.59 -190.77 -1.26 -31.99 16 15 C 0.31 17.62 6.42 85.63 0.55 18.17 16 16 C -0.55 -31.30 9.28 25.60 0.24 -31.06 16 17 H 0.07 3.75 7.60 -2.92 -0.02 3.73 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 20 Si 0.98 43.27 29.54 68.60 2.03 45.29 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 24 C -0.14 -3.10 6.80 22.39 0.15 -2.95 16 25 C -0.14 -2.51 8.81 22.38 0.20 -2.31 16 26 C 0.02 0.21 3.62 86.31 0.31 0.53 16 27 C 0.09 1.05 3.42 30.62 0.10 1.15 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 C -0.14 -1.21 9.57 71.98 0.69 -0.52 16 30 O -0.40 -6.00 10.11 -148.98 -1.51 -7.50 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.10 1.05 6.86 -2.39 -0.02 1.03 16 35 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.15 1.88 7.20 -2.91 -0.02 1.86 16 37 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.40 12.31 6.73 -92.71 -0.62 11.68 16 39 H 0.11 2.42 5.78 73.35 0.42 2.84 16 40 H 0.37 15.91 6.24 -213.34 -1.33 14.58 16 41 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 42 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 43 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.13 3.01 6.90 -2.91 -0.02 2.99 16 45 H 0.15 2.05 5.81 -2.91 -0.02 2.03 16 46 H 0.05 0.71 7.54 -2.39 -0.02 0.69 16 47 H 0.10 1.07 7.22 -2.39 -0.02 1.06 16 48 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 49 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -68.99 409.83 -1.17 -70.16 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.55 Total: 30.09 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 6.17 Total: -3.15 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -5.94 Total: -133.29 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -1.51 Total: -7.50 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -1.37 Total: -1.61 kcal Total: -68.99 -1.17 -70.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.033 kcal (2) G-P(sol) polarization free energy of solvation -68.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds