Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.50838 * 2 1 4 4 C 1.53104 * 109.50880 * 120.09006 * 2 1 3 5 5 N 1.47009 * 109.25667 * 63.12886 * 4 2 1 6 6 C 1.39963 * 110.99869 * 182.39692 * 5 4 2 7 7 C 1.38873 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.38073 * 120.00312 * 179.97438 * 7 6 5 9 9 C 1.38878 * 119.99935 * 0.02562 * 8 7 6 10 10 N 1.40026 * 120.00435 * 180.02562 * 9 8 7 11 11 C 1.38919 * 120.00209 * 223.79087 * 10 9 8 12 12 S 1.76203 * 119.99993 * 8.80319 * 11 10 9 13 13 N 1.29969 * 119.99897 * 188.81093 * 11 10 9 14 14 N 1.40100 * 120.00312 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00285 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47565 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99267 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00300 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00184 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00031 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47276 * 89.99778 * 20 18 16 22 22 H 1.48500 * 109.46994 * 209.99828 * 20 18 16 23 23 H 1.48504 * 109.46732 * 329.99649 * 20 18 16 24 24 C 1.38885 * 119.99989 * 0.28132 * 9 8 7 25 25 C 1.38084 * 119.99464 * 359.40234 * 24 9 8 26 26 C 1.47014 * 110.75696 * 58.61972 * 5 4 2 27 27 C 1.53107 * 109.25378 * 301.38275 * 26 5 4 28 28 H 1.09001 * 109.50582 * 296.91193 * 27 26 5 29 29 C 1.53000 * 109.54083 * 176.80227 * 27 26 5 30 30 O 1.43017 * 109.25912 * 56.84818 * 27 26 5 31 31 H 1.09002 * 109.47014 * 299.91253 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.90991 * 1 2 3 33 33 H 1.08998 * 109.47315 * 179.91567 * 1 2 3 34 34 H 1.09000 * 109.50190 * 303.19547 * 4 2 1 35 35 H 1.09002 * 109.50758 * 183.06416 * 4 2 1 36 36 H 1.08004 * 120.00253 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.99960 * 180.02562 * 8 7 6 38 38 H 0.97004 * 120.00052 * 43.78033 * 10 9 8 39 39 H 1.34500 * 103.00015 * 351.81757 * 12 11 10 40 40 H 0.97002 * 119.99844 * 0.02562 * 14 13 11 41 41 H 1.09004 * 109.47507 * 300.00282 * 15 14 13 42 42 H 1.09002 * 109.47126 * 60.00100 * 15 14 13 43 43 H 0.96994 * 120.00343 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.00859 * 179.72299 * 24 9 8 45 45 H 1.07999 * 119.99862 * 180.32425 * 25 24 9 46 46 H 1.08996 * 109.50635 * 61.31473 * 26 5 4 47 47 H 1.08998 * 109.50898 * 181.44880 * 26 5 4 48 48 H 1.08999 * 109.47364 * 300.20100 * 29 27 26 49 49 H 1.09002 * 109.46642 * 60.19346 * 29 27 26 50 50 H 1.08995 * 109.47116 * 180.19134 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7235 1.2487 5 7 1.6119 -2.1288 1.2047 6 6 2.0145 -2.8126 2.3576 7 6 1.7057 -4.1579 2.5105 8 6 2.1033 -4.8326 3.6477 9 6 2.8116 -4.1658 4.6388 10 7 3.2153 -4.8501 5.7918 11 6 3.0671 -4.2571 7.0393 12 16 2.1650 -2.7518 7.1976 13 7 3.5940 -4.8125 8.0896 14 7 4.3110 -6.0095 7.9638 15 6 4.9044 -6.6358 9.1478 16 6 5.6157 -7.9014 8.7435 17 1 5.6245 -8.2086 7.7081 18 6 6.2543 -8.6675 9.6954 19 7 6.8747 -9.7722 9.3426 20 14 6.2373 -8.1371 11.4865 21 1 5.0546 -8.7247 12.1655 22 1 7.4768 -8.6092 12.1543 23 1 6.1670 -6.6557 11.5634 24 6 3.1149 -2.8188 4.4888 25 6 2.7230 -2.1458 3.3486 26 6 2.1203 -2.7913 -0.0053 27 6 1.6082 -2.0470 -1.2414 28 1 0.5205 -2.1072 -1.2779 29 6 2.1976 -2.6826 -2.5022 30 8 2.0084 -0.6761 -1.1660 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.6325 -0.2458 2.1390 35 1 3.1299 -0.6763 1.2766 36 1 1.1545 -4.6765 1.7400 37 1 1.8634 -5.8790 3.7664 38 1 3.5984 -5.7384 5.7195 39 1 1.9434 -2.3960 5.9195 40 1 4.4145 -6.4236 7.0928 41 1 5.6171 -5.9487 9.6037 42 1 4.1190 -6.8735 9.8653 43 1 7.3237 -10.3113 10.0123 44 1 3.6619 -2.2990 5.2615 45 1 2.9634 -1.0996 3.2295 46 1 3.2101 -2.7771 0.0026 47 1 1.7693 -3.8229 -0.0302 48 1 3.2854 -2.6236 -2.4644 49 1 1.8923 -3.7275 -2.5590 50 1 1.8351 -2.1498 -3.3812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013658699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = 66.515520 kcal Electronic energy + Delta-G solvation = -29795.177566 eV Core-core repulsion = 25757.859883 eV Total energy + Delta-G solvation = -4037.317683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.17838 -39.68578 -37.75056 -36.08005 -34.14473 -33.99598 -32.79375 -31.53631 -31.13612 -30.53499 -28.24163 -27.59107 -26.69926 -25.07841 -23.93992 -22.94144 -22.02085 -21.71618 -20.68125 -19.99022 -18.73575 -18.08768 -17.38437 -17.09826 -16.77732 -16.55524 -16.11666 -15.71832 -15.46912 -15.22030 -14.95882 -14.63378 -14.31785 -14.10232 -13.95652 -13.61301 -13.43225 -13.39927 -13.07080 -12.91621 -12.76635 -12.61228 -12.41339 -12.37342 -12.33379 -12.21213 -11.99074 -11.57130 -11.46114 -10.95071 -10.89525 -10.86387 -10.83280 -10.43389 -10.22219 -9.96918 -9.78467 -9.46026 -9.36215 -9.18828 -8.77373 -8.53553 -7.81114 -6.53535 -6.21775 -4.23506 0.87838 0.99415 1.34023 2.46645 2.70562 3.07669 3.20088 3.23227 3.26259 3.33395 3.38964 3.49932 4.19108 4.23629 4.27541 4.32945 4.40602 4.50830 4.57868 4.61703 4.65423 4.82358 4.87157 4.96209 5.01809 5.06791 5.08151 5.13609 5.15414 5.23431 5.27264 5.40219 5.46000 5.54451 5.62467 5.64324 5.73344 5.80441 5.83675 6.03959 6.21987 6.27307 6.50634 6.71473 6.77863 6.87039 7.10779 7.14961 7.31462 7.51368 7.93888 8.37271 8.76598 9.14183 9.38329 10.90388 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.001754 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.422914 B =15963.897953 C =17005.396869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.090 3.910 3 H 0.109 0.891 4 C 0.018 3.982 5 N -0.481 5.481 6 C 0.082 3.918 7 C -0.105 4.105 8 C -0.121 4.121 9 C 0.144 3.856 10 N -0.701 5.701 11 C 0.248 3.752 12 S -0.051 6.051 13 N -0.235 5.235 14 N -0.631 5.631 15 C 0.261 3.739 16 C -0.540 4.540 17 H 0.076 0.924 18 C 0.077 3.923 19 N -0.893 5.893 20 Si 0.881 3.119 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.261 1.261 24 C -0.152 4.152 25 C -0.137 4.137 26 C 0.026 3.974 27 C 0.085 3.915 28 H 0.072 0.928 29 C -0.146 4.146 30 O -0.375 6.375 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.371 0.629 41 H 0.016 0.984 42 H 0.012 0.988 43 H 0.268 0.732 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.053 0.947 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 19.545 -22.832 32.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.032 3.968 3 H 0.127 0.873 4 C -0.110 4.110 5 N -0.197 5.197 6 C -0.016 4.016 7 C -0.127 4.127 8 C -0.144 4.144 9 C 0.045 3.955 10 N -0.343 5.343 11 C -0.140 4.140 12 S 0.099 5.901 13 N -0.056 5.056 14 N -0.371 5.371 15 C 0.138 3.862 16 C -0.579 4.579 17 H 0.094 0.906 18 C -0.126 4.126 19 N -0.531 5.531 20 Si 0.707 3.293 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.185 1.185 24 C -0.175 4.175 25 C -0.160 4.160 26 C -0.100 4.100 27 C 0.027 3.973 28 H 0.090 0.910 29 C -0.203 4.203 30 O -0.295 6.295 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.248 0.752 39 H 0.068 0.932 40 H 0.208 0.792 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.078 0.922 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.097 20.369 -21.364 32.711 hybrid contribution 1.286 -1.486 -0.990 2.200 sum -12.811 18.883 -22.353 31.943 Atomic orbital electron populations 1.22305 0.95330 1.03506 1.02340 1.22296 0.94556 0.96055 0.83909 0.87338 1.22994 0.99521 0.88368 1.00088 1.59460 1.56657 1.02413 1.01218 1.18833 0.97285 0.93144 0.92298 1.20599 1.01150 0.92747 0.98168 1.20954 0.98047 1.00920 0.94434 1.17775 0.97225 0.92186 0.88361 1.42681 1.69225 1.20573 1.01790 1.23533 1.06598 1.00455 0.83420 1.86024 1.68472 1.21293 1.14309 1.74552 1.07586 1.01380 1.22051 1.47911 1.58811 1.20005 1.10373 1.19221 0.91815 0.91912 0.83242 1.21025 1.34283 1.05600 0.96959 0.90614 1.24762 0.94247 0.94386 0.99234 1.69876 1.34432 1.14129 1.34651 0.86763 0.77931 0.80029 0.84573 1.19858 1.20952 1.18506 1.21301 1.02465 0.94631 0.99073 1.21094 0.99708 1.00722 0.94454 1.23004 0.99033 0.99173 0.88830 1.22200 0.99210 0.81750 0.94101 0.91043 1.21756 1.01989 1.00420 0.96159 1.88068 1.75509 1.23068 1.42822 0.91507 0.92132 0.91060 0.88857 0.92653 0.85340 0.85113 0.75188 0.93175 0.79231 0.96633 0.97066 0.92244 0.84837 0.85144 0.92891 0.89006 0.91719 0.90755 0.91344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 8.89 37.16 0.33 -0.71 16 2 C 0.09 0.58 3.92 -26.68 -0.10 0.47 16 3 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 4 C 0.02 0.12 3.74 -3.71 -0.01 0.11 16 5 N -0.48 -3.83 4.15 -170.73 -0.71 -4.54 16 6 C 0.08 0.77 5.64 -83.67 -0.47 0.30 16 7 C -0.11 -1.00 9.19 -39.41 -0.36 -1.36 16 8 C -0.12 -1.32 9.96 -39.41 -0.39 -1.71 16 9 C 0.14 1.80 5.75 -83.64 -0.48 1.32 16 10 N -0.70 -10.28 5.39 -10.21 -0.05 -10.34 16 11 C 0.25 4.15 7.83 -87.15 -0.68 3.46 16 12 S -0.05 -0.70 24.54 -107.50 -2.64 -3.33 16 13 N -0.24 -4.76 11.53 30.94 0.36 -4.40 16 14 N -0.63 -13.78 6.58 -11.66 -0.08 -13.86 16 15 C 0.26 6.50 5.49 -5.20 -0.03 6.47 16 16 C -0.54 -15.02 9.83 -34.44 -0.34 -15.36 16 17 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 20 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 24 C -0.15 -1.74 6.51 -39.40 -0.26 -1.99 16 25 C -0.14 -1.33 8.81 -39.40 -0.35 -1.68 16 26 C 0.03 0.18 4.70 -3.71 -0.02 0.17 16 27 C 0.09 0.57 3.03 -26.68 -0.08 0.49 16 28 H 0.07 0.46 6.49 -51.93 -0.34 0.13 16 29 C -0.15 -0.77 9.57 37.16 0.36 -0.41 16 30 O -0.38 -3.06 10.28 -35.23 -0.36 -3.42 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.49 6.13 -51.93 -0.32 0.17 16 34 H 0.09 0.58 7.23 -51.93 -0.38 0.20 16 35 H 0.06 0.41 7.54 -51.93 -0.39 0.02 16 36 H 0.13 0.99 7.20 -52.48 -0.38 0.61 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.41 6.06 6.76 -40.82 -0.28 5.78 16 39 H 0.10 1.21 4.99 97.61 0.49 1.70 16 40 H 0.37 7.57 6.26 -182.60 -1.14 6.43 16 41 H 0.02 0.40 7.20 -51.93 -0.37 0.03 16 42 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 1.57 6.62 -52.49 -0.35 1.23 16 45 H 0.13 1.03 5.81 -52.49 -0.30 0.72 16 46 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 0.58 6.86 -51.93 -0.36 0.22 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -31.21 400.83 -11.79 -43.01 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -7.47 Total: 8.47 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.99 Total: -8.33 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.29 Total: -58.99 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: -0.36 Total: -3.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.64 Total: -3.33 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.21 -11.79 -43.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.521 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds