Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.50838 * 2 1 4 4 C 1.53104 * 109.50880 * 120.09006 * 2 1 3 5 5 N 1.47009 * 109.25667 * 63.12886 * 4 2 1 6 6 C 1.39963 * 110.99869 * 182.39692 * 5 4 2 7 7 C 1.38873 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.38073 * 120.00312 * 179.97438 * 7 6 5 9 9 C 1.38878 * 119.99935 * 0.02562 * 8 7 6 10 10 N 1.40026 * 120.00435 * 180.02562 * 9 8 7 11 11 C 1.38919 * 120.00209 * 223.79087 * 10 9 8 12 12 S 1.76203 * 119.99993 * 8.80319 * 11 10 9 13 13 N 1.29969 * 119.99897 * 188.81093 * 11 10 9 14 14 N 1.40100 * 120.00312 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00285 * 180.02562 * 14 13 11 16 16 C 1.50699 * 109.47565 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99267 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00300 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00184 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00031 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47276 * 89.99778 * 20 18 16 22 22 H 1.48500 * 109.46994 * 209.99828 * 20 18 16 23 23 H 1.48504 * 109.46732 * 329.99649 * 20 18 16 24 24 C 1.38885 * 119.99989 * 0.28132 * 9 8 7 25 25 C 1.38084 * 119.99464 * 359.40234 * 24 9 8 26 26 C 1.47014 * 110.75696 * 58.61972 * 5 4 2 27 27 C 1.53107 * 109.25378 * 301.38275 * 26 5 4 28 28 H 1.09001 * 109.50582 * 296.91193 * 27 26 5 29 29 C 1.53000 * 109.54083 * 176.80227 * 27 26 5 30 30 O 1.43017 * 109.25912 * 56.84818 * 27 26 5 31 31 H 1.09002 * 109.47014 * 299.91253 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.90991 * 1 2 3 33 33 H 1.08998 * 109.47315 * 179.91567 * 1 2 3 34 34 H 1.09000 * 109.50190 * 303.19547 * 4 2 1 35 35 H 1.09002 * 109.50758 * 183.06416 * 4 2 1 36 36 H 1.08004 * 120.00253 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.99960 * 180.02562 * 8 7 6 38 38 H 0.97004 * 120.00052 * 43.78033 * 10 9 8 39 39 H 1.34500 * 103.00015 * 351.81757 * 12 11 10 40 40 H 0.97002 * 119.99844 * 0.02562 * 14 13 11 41 41 H 1.09004 * 109.47507 * 300.00282 * 15 14 13 42 42 H 1.09002 * 109.47126 * 60.00100 * 15 14 13 43 43 H 0.96994 * 120.00343 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.00859 * 179.72299 * 24 9 8 45 45 H 1.07999 * 119.99862 * 180.32425 * 25 24 9 46 46 H 1.08996 * 109.50635 * 61.31473 * 26 5 4 47 47 H 1.08998 * 109.50898 * 181.44880 * 26 5 4 48 48 H 1.08999 * 109.47364 * 300.20100 * 29 27 26 49 49 H 1.09002 * 109.46642 * 60.19346 * 29 27 26 50 50 H 1.08995 * 109.47116 * 180.19134 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7235 1.2487 5 7 1.6119 -2.1288 1.2047 6 6 2.0145 -2.8126 2.3576 7 6 1.7057 -4.1579 2.5105 8 6 2.1033 -4.8326 3.6477 9 6 2.8116 -4.1658 4.6388 10 7 3.2153 -4.8501 5.7918 11 6 3.0671 -4.2571 7.0393 12 16 2.1650 -2.7518 7.1976 13 7 3.5940 -4.8125 8.0896 14 7 4.3110 -6.0095 7.9638 15 6 4.9044 -6.6358 9.1478 16 6 5.6157 -7.9014 8.7435 17 1 5.6245 -8.2086 7.7081 18 6 6.2543 -8.6675 9.6954 19 7 6.8747 -9.7722 9.3426 20 14 6.2373 -8.1371 11.4865 21 1 5.0546 -8.7247 12.1655 22 1 7.4768 -8.6092 12.1543 23 1 6.1670 -6.6557 11.5634 24 6 3.1149 -2.8188 4.4888 25 6 2.7230 -2.1458 3.3486 26 6 2.1203 -2.7913 -0.0053 27 6 1.6082 -2.0470 -1.2414 28 1 0.5205 -2.1072 -1.2779 29 6 2.1976 -2.6826 -2.5022 30 8 2.0084 -0.6761 -1.1660 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5152 -0.8892 33 1 -0.3634 -1.0276 -0.0015 34 1 1.6325 -0.2458 2.1390 35 1 3.1299 -0.6763 1.2766 36 1 1.1545 -4.6765 1.7400 37 1 1.8634 -5.8790 3.7664 38 1 3.5984 -5.7384 5.7195 39 1 1.9434 -2.3960 5.9195 40 1 4.4145 -6.4236 7.0928 41 1 5.6171 -5.9487 9.6037 42 1 4.1190 -6.8735 9.8653 43 1 7.3237 -10.3113 10.0123 44 1 3.6619 -2.2990 5.2615 45 1 2.9634 -1.0996 3.2295 46 1 3.2101 -2.7771 0.0026 47 1 1.7693 -3.8229 -0.0302 48 1 3.2854 -2.6236 -2.4644 49 1 1.8923 -3.7275 -2.5590 50 1 1.8351 -2.1498 -3.3812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013658699.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = 46.720923 kcal Electronic energy + Delta-G solvation = -29796.035924 eV Core-core repulsion = 25757.859883 eV Total energy + Delta-G solvation = -4038.176041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.167 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.86130 -40.51562 -38.84397 -37.10790 -35.64308 -34.51394 -34.45977 -32.61476 -32.34875 -31.30332 -29.21797 -28.42206 -28.09706 -25.77438 -24.79842 -24.07976 -23.37095 -22.57561 -21.97501 -20.57017 -20.02374 -19.24182 -18.44706 -18.21557 -17.94955 -17.53273 -16.88667 -16.71595 -16.32611 -16.14721 -15.77746 -15.56244 -15.47586 -15.23078 -15.13877 -14.98835 -14.65552 -14.38356 -14.18575 -13.97719 -13.71574 -13.51292 -13.32820 -13.14679 -12.96013 -12.90351 -12.80673 -12.69943 -12.52602 -12.27258 -12.06733 -12.00060 -11.83878 -11.69363 -11.48593 -11.34143 -11.21618 -10.91413 -10.69020 -10.27185 -10.03915 -9.73328 -8.73702 -8.38928 -7.98804 -6.46294 -0.10397 0.14334 0.21381 1.28559 1.37220 1.37464 1.45523 1.51433 1.97345 2.30927 2.36080 2.67803 2.76949 2.89019 2.96682 3.58313 3.68400 3.78163 3.79884 3.98010 4.01491 4.11965 4.17107 4.30740 4.35944 4.38238 4.39270 4.53412 4.60426 4.61675 4.63108 4.73249 4.85522 4.86487 4.94796 5.00195 5.02947 5.06031 5.11275 5.15569 5.16647 5.24388 5.36161 5.38749 5.46589 5.79730 5.83525 5.98257 6.08830 6.21050 6.27548 6.43736 6.60067 7.19137 7.65325 8.76362 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.019287 B = 0.001754 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.422914 B =15963.897953 C =17005.396869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 H 0.122 0.878 4 C 0.016 3.984 5 N -0.481 5.481 6 C 0.090 3.910 7 C -0.104 4.104 8 C -0.121 4.121 9 C 0.115 3.885 10 N -0.703 5.703 11 C 0.274 3.726 12 S -0.027 6.027 13 N -0.285 5.285 14 N -0.647 5.647 15 C 0.277 3.723 16 C -0.546 4.546 17 H 0.045 0.955 18 C 0.022 3.978 19 N -0.936 5.936 20 Si 0.949 3.051 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.252 1.252 24 C -0.156 4.156 25 C -0.136 4.136 26 C 0.026 3.974 27 C 0.085 3.915 28 H 0.075 0.925 29 C -0.144 4.144 30 O -0.393 6.393 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.149 0.851 37 H 0.136 0.864 38 H 0.405 0.595 39 H 0.121 0.879 40 H 0.372 0.628 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.272 0.728 44 H 0.129 0.871 45 H 0.150 0.850 46 H 0.042 0.958 47 H 0.102 0.898 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.071 21.693 -23.799 35.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.030 3.970 3 H 0.140 0.860 4 C -0.111 4.111 5 N -0.197 5.197 6 C -0.009 4.009 7 C -0.125 4.125 8 C -0.142 4.142 9 C 0.017 3.983 10 N -0.344 5.344 11 C -0.115 4.115 12 S 0.123 5.877 13 N -0.106 5.106 14 N -0.388 5.388 15 C 0.153 3.847 16 C -0.585 4.585 17 H 0.063 0.937 18 C -0.178 4.178 19 N -0.575 5.575 20 Si 0.772 3.228 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.176 1.176 24 C -0.179 4.179 25 C -0.159 4.159 26 C -0.099 4.099 27 C 0.028 3.972 28 H 0.093 0.907 29 C -0.201 4.201 30 O -0.313 6.313 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.244 0.756 39 H 0.086 0.914 40 H 0.209 0.791 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.081 0.919 44 H 0.147 0.853 45 H 0.168 0.832 46 H 0.061 0.939 47 H 0.121 0.879 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.700 22.557 -22.404 35.457 hybrid contribution 1.619 -1.968 -1.063 2.761 sum -14.081 20.589 -23.466 34.247 Atomic orbital electron populations 1.22254 0.94851 1.02984 1.02859 1.22433 0.94917 0.96528 0.83164 0.86000 1.23075 0.99378 0.87764 1.00915 1.59465 1.56340 1.02956 1.00919 1.19026 0.96028 0.93184 0.92626 1.20818 1.00782 0.92906 0.98035 1.21075 0.97579 1.01283 0.94304 1.17977 0.99229 0.92814 0.88300 1.42765 1.69035 1.20559 1.01995 1.24215 1.03440 1.00275 0.83605 1.85994 1.66982 1.18965 1.15770 1.74569 1.10840 1.01685 1.23541 1.47429 1.60635 1.21467 1.09258 1.18776 0.91216 0.90443 0.84270 1.21233 1.34600 1.06954 0.95748 0.93705 1.25679 0.93698 0.94277 1.04101 1.69999 1.35585 1.15481 1.36428 0.85690 0.78451 0.80050 0.78651 1.18819 1.20053 1.17594 1.21317 1.02663 0.94206 0.99723 1.21293 0.99183 1.01670 0.93715 1.23045 0.98385 0.99848 0.88642 1.22277 0.99411 0.81256 0.94305 0.90743 1.21770 1.01476 1.01293 0.95586 1.88057 1.75889 1.23769 1.43551 0.90705 0.91928 0.92022 0.87809 0.93031 0.83316 0.84573 0.75616 0.91434 0.79126 0.97505 0.97520 0.91854 0.85321 0.83205 0.93937 0.87933 0.92388 0.89227 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.89 71.98 0.64 -1.00 16 2 C 0.09 0.93 3.92 30.63 0.12 1.05 16 3 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 4 C 0.02 0.18 3.74 86.32 0.32 0.50 16 5 N -0.48 -6.44 4.15 -694.08 -2.88 -9.32 16 6 C 0.09 1.46 5.64 38.15 0.22 1.67 16 7 C -0.10 -1.73 9.19 22.38 0.21 -1.52 16 8 C -0.12 -2.44 9.96 22.38 0.22 -2.21 16 9 C 0.11 2.75 5.75 38.14 0.22 2.97 16 10 N -0.70 -20.56 5.39 -186.21 -1.00 -21.56 16 11 C 0.27 9.06 7.83 179.14 1.40 10.46 16 12 S -0.03 -0.70 24.54 -56.49 -1.39 -2.08 16 13 N -0.29 -11.68 11.53 -56.04 -0.65 -12.32 16 14 N -0.65 -29.19 6.58 -190.79 -1.26 -30.44 16 15 C 0.28 14.12 5.49 85.63 0.47 14.59 16 16 C -0.55 -31.49 9.83 25.60 0.25 -31.24 16 17 H 0.04 2.78 7.84 -2.91 -0.02 2.75 16 18 C 0.02 1.28 5.47 84.65 0.46 1.75 16 19 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 20 Si 0.95 44.12 27.47 68.60 1.88 46.00 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 24 C -0.16 -3.32 6.51 22.39 0.15 -3.18 16 25 C -0.14 -2.31 8.81 22.39 0.20 -2.11 16 26 C 0.03 0.32 4.70 86.32 0.41 0.73 16 27 C 0.09 0.97 3.03 30.63 0.09 1.07 16 28 H 0.07 0.81 6.49 -2.39 -0.02 0.80 16 29 C -0.14 -1.27 9.57 71.98 0.69 -0.58 16 30 O -0.39 -5.69 10.28 -148.98 -1.53 -7.22 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.71 6.13 -2.39 -0.01 0.70 16 34 H 0.10 0.96 7.23 -2.39 -0.02 0.94 16 35 H 0.05 0.64 7.54 -2.39 -0.02 0.63 16 36 H 0.15 1.84 7.20 -2.91 -0.02 1.82 16 37 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.41 12.37 6.76 -92.71 -0.63 11.74 16 39 H 0.12 2.56 4.99 73.35 0.37 2.93 16 40 H 0.37 15.93 6.26 -213.32 -1.33 14.59 16 41 H 0.01 0.37 7.20 -2.38 -0.02 0.35 16 42 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.13 2.84 6.62 -2.91 -0.02 2.82 16 45 H 0.15 1.93 5.81 -2.91 -0.02 1.91 16 46 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.10 1.02 6.86 -2.39 -0.02 1.00 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -68.27 400.83 -1.11 -69.38 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.66 Total: 31.46 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.06 Total: -7.05 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -5.49 Total: -130.49 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -1.53 Total: -7.22 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -1.39 Total: -2.08 kcal Total: -68.27 -1.11 -69.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658699.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.102 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds