Wall clock time and date at job start Tue Mar 31 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31770 * 118.59452 * 2 1 4 4 C 1.33421 * 121.10527 * 179.97438 * 3 2 1 5 5 S 1.76202 * 120.99426 * 179.97438 * 4 3 2 6 6 C 1.81002 * 99.99938 * 0.02562 * 5 4 3 7 7 C 1.50699 * 109.46903 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00100 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99403 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00325 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 119.99620 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47067 * 59.99776 * 11 9 7 13 13 H 1.48495 * 109.46936 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46658 * 299.99668 * 11 9 7 15 15 C 1.40345 * 118.01868 * 0.02562 * 4 3 2 16 16 C 1.40757 * 118.73087 * 359.97438 * 15 4 3 17 17 N 1.31998 * 118.59904 * 180.02562 * 2 1 3 18 18 N 1.37815 * 118.72053 * 180.02562 * 16 15 4 19 19 C 1.46504 * 119.69998 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47080 * 90.00194 * 19 18 16 21 21 C 1.53001 * 109.46991 * 174.99909 * 20 19 18 22 22 C 1.53005 * 109.47362 * 294.99711 * 20 19 18 23 23 C 1.34468 * 120.59989 * 0.02562 * 18 16 15 24 24 O 1.21561 * 118.55114 * 180.02562 * 23 18 16 25 25 N 1.34249 * 122.88957 * 359.97438 * 23 18 16 26 26 C 1.46503 * 119.42565 * 180.02562 * 25 23 18 27 27 C 1.35213 * 121.14045 * 0.27451 * 25 23 18 28 28 O 1.21645 * 120.96072 * 179.72852 * 27 25 23 29 29 H 1.08994 * 109.47443 * 90.00513 * 1 2 3 30 30 H 1.09001 * 109.46830 * 210.00218 * 1 2 3 31 31 H 1.08998 * 109.47398 * 329.99838 * 1 2 3 32 32 H 1.09008 * 109.46803 * 300.00342 * 6 5 4 33 33 H 1.08999 * 109.47037 * 59.99890 * 6 5 4 34 34 H 0.97001 * 119.99674 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.46783 * 210.00495 * 19 18 16 36 36 H 1.09004 * 109.46675 * 329.99805 * 19 18 16 37 37 H 1.08995 * 109.47325 * 55.00117 * 20 19 18 38 38 H 1.09002 * 109.47234 * 60.00122 * 21 20 19 39 39 H 1.09003 * 109.47177 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47291 * 299.99946 * 21 20 19 41 41 H 1.09000 * 109.46686 * 59.99991 * 22 20 19 42 42 H 1.08990 * 109.47397 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.47232 * 300.00463 * 22 20 19 44 44 H 1.08997 * 109.47252 * 90.00177 * 26 25 23 45 45 H 1.09006 * 109.46757 * 210.00058 * 26 25 23 46 46 H 1.09000 * 109.46983 * 329.99286 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1376 1.1570 0.0000 4 6 3.4706 1.2154 0.0005 5 16 4.3109 2.7642 -0.0002 6 6 2.8940 3.8905 -0.0007 7 6 3.3850 5.3153 -0.0020 8 1 4.4451 5.5211 -0.0028 9 6 2.4806 6.3560 -0.0020 10 7 1.1896 6.1053 -0.0015 11 14 3.0891 8.1222 -0.0029 12 1 3.9118 8.3617 -1.2157 13 1 1.9267 9.0462 -0.0022 14 1 3.9126 8.3625 1.2094 15 6 4.1835 0.0065 0.0005 16 6 3.4640 -1.2033 0.0005 17 7 2.1388 -1.1589 -0.0005 18 7 4.1643 -2.3902 0.0010 19 6 3.4371 -3.6621 0.0016 20 6 3.1840 -4.1054 -1.4406 21 6 2.5363 -5.4916 -1.4418 22 6 2.2499 -3.1055 -2.1252 23 6 5.5090 -2.3916 0.0020 24 8 6.0889 -3.4600 0.0020 25 7 6.2392 -1.2651 0.0021 26 6 7.7015 -1.3551 0.0027 27 6 5.6484 -0.0489 0.0067 28 8 6.3132 0.9698 0.0116 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 2.2898 3.7139 -0.8907 33 1 2.2898 3.7148 0.8893 34 1 0.5533 6.8375 -0.0012 35 1 4.0294 -4.4190 0.5159 36 1 2.4842 -3.5354 0.5155 37 1 4.1305 -4.1463 -1.9796 38 1 1.5897 -5.4508 -0.9028 39 1 2.3555 -5.8073 -2.4693 40 1 3.2017 -6.2040 -0.9541 41 1 2.7114 -2.1180 -2.1243 42 1 2.0700 -3.4211 -3.1528 43 1 1.3035 -3.0647 -1.5862 44 1 8.0645 -1.3777 -1.0248 45 1 8.1186 -0.4890 0.5165 46 1 8.0092 -2.2656 0.5169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013984572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:23 Heat of formation + Delta-G solvation = -6.337013 kcal Electronic energy + Delta-G solvation = -31375.249844 eV Core-core repulsion = 27198.939944 eV Total energy + Delta-G solvation = -4176.309900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.57880 -40.38714 -39.34174 -37.41377 -35.69268 -34.80810 -33.54213 -33.20571 -32.09665 -29.68076 -28.61180 -27.59274 -27.34849 -26.59241 -24.99374 -23.95235 -23.35654 -22.56702 -20.63698 -19.78089 -19.12891 -18.31698 -17.30197 -17.13499 -16.53613 -16.28293 -15.76239 -15.50687 -15.39550 -15.05767 -14.92170 -14.80664 -14.38537 -13.90018 -13.78027 -13.32121 -13.14435 -12.96495 -12.72111 -12.57264 -12.51884 -12.47674 -12.40280 -12.36973 -12.13591 -11.80891 -11.76820 -11.43591 -11.10747 -11.01225 -10.90730 -10.88458 -10.82067 -10.64351 -10.28800 -10.14799 -9.89307 -9.64158 -9.21141 -9.01265 -8.94478 -8.66486 -7.21977 -6.23937 -4.31366 0.39264 0.92408 1.62143 1.92227 1.98035 2.64309 2.86725 3.24699 3.26865 3.28478 3.36917 3.74614 3.77745 4.02212 4.30398 4.41234 4.55781 4.60721 4.71482 4.81210 4.93073 5.09306 5.12843 5.18220 5.21784 5.26895 5.31473 5.40746 5.49757 5.52607 5.55321 5.56991 5.65412 5.69063 5.75363 5.80791 5.87491 6.00849 6.07452 6.22312 6.31766 6.85632 7.05421 7.06140 7.16942 7.32281 7.65039 7.74313 7.90363 8.08020 8.69919 9.32651 10.86468 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003093 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.011550 B = 9051.610843 C =10776.916664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.395 3.605 3 N -0.533 5.533 4 C 0.236 3.764 5 S 0.042 5.958 6 C 0.038 3.962 7 C -0.528 4.528 8 H 0.066 0.934 9 C 0.072 3.928 10 N -0.883 5.883 11 Si 0.905 3.095 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.273 1.273 15 C -0.318 4.318 16 C 0.460 3.540 17 N -0.566 5.566 18 N -0.521 5.521 19 C 0.124 3.876 20 C -0.110 4.110 21 C -0.140 4.140 22 C -0.139 4.139 23 C 0.711 3.289 24 O -0.539 6.539 25 N -0.562 5.562 26 C 0.082 3.918 27 C 0.567 3.433 28 O -0.462 6.462 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.267 0.733 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.811 -21.089 -0.838 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 N -0.256 5.256 4 C -0.019 4.019 5 S 0.291 5.709 6 C -0.109 4.109 7 C -0.567 4.567 8 H 0.084 0.916 9 C -0.133 4.133 10 N -0.520 5.520 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.198 1.198 15 C -0.339 4.339 16 C 0.217 3.783 17 N -0.293 5.293 18 N -0.246 5.246 19 C 0.003 3.997 20 C -0.129 4.129 21 C -0.198 4.198 22 C -0.196 4.196 23 C 0.413 3.587 24 O -0.411 6.411 25 N -0.307 5.307 26 C -0.059 4.059 27 C 0.357 3.643 28 O -0.333 6.333 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.676 -20.646 -0.827 20.836 hybrid contribution -0.260 0.616 -0.073 0.672 sum 2.417 -20.031 -0.900 20.196 Atomic orbital electron populations 1.20680 0.84958 1.04627 1.04353 1.23385 0.98072 0.82152 0.84025 1.69155 1.07019 1.28282 1.21105 1.24327 0.92114 0.98946 0.86482 1.86694 1.14143 0.89949 1.80094 1.21591 0.92175 0.94585 1.02557 1.20593 0.93591 0.88493 1.54051 0.91586 1.24924 0.94662 0.99450 0.94297 1.69957 1.00826 1.32750 1.48445 0.86441 0.78344 0.83027 0.79038 1.19831 1.20947 1.19833 1.20165 0.93998 0.94108 1.25666 1.18194 0.89593 0.84165 0.86331 1.67915 1.05608 1.30394 1.25354 1.44612 1.04271 1.06822 1.68916 1.21962 0.97433 0.81754 0.98567 1.21458 1.00008 0.96175 0.95265 1.21723 1.00725 0.95124 1.02259 1.21838 0.99941 0.98079 0.99782 1.15472 0.80690 0.84576 0.77933 1.90976 1.68011 1.27969 1.54191 1.46139 1.10154 1.05870 1.68502 1.21922 0.75009 1.04973 1.03984 1.17841 0.87314 0.82730 0.76378 1.90885 1.65243 1.32020 1.45148 0.89010 0.89458 0.88660 0.92760 0.92753 0.92334 0.88453 0.87685 0.90974 0.92154 0.92185 0.92403 0.93615 0.93124 0.91235 0.90834 0.88677 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 10.29 36.00 0.37 -0.60 16 2 C 0.40 5.98 7.63 -157.04 -1.20 4.78 16 3 N -0.53 -10.00 9.23 -9.23 -0.09 -10.09 16 4 C 0.24 4.61 7.06 -16.07 -0.11 4.49 16 5 S 0.04 0.92 19.43 -107.50 -2.09 -1.17 16 6 C 0.04 0.97 4.65 36.01 0.17 1.14 16 7 C -0.53 -14.38 9.13 -34.44 -0.31 -14.69 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.37 16 9 C 0.07 1.96 5.46 -17.82 -0.10 1.87 16 10 N -0.88 -24.96 13.29 55.43 0.74 -24.22 16 11 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 C -0.32 -5.52 5.90 -104.78 -0.62 -6.13 16 16 C 0.46 6.88 5.89 -155.38 -0.92 5.97 16 17 N -0.57 -7.93 7.43 -9.89 -0.07 -8.00 16 18 N -0.52 -6.85 2.51 -120.89 -0.30 -7.15 16 19 C 0.12 1.26 4.67 -4.04 -0.02 1.24 16 20 C -0.11 -1.03 3.13 -90.62 -0.28 -1.31 16 21 C -0.14 -0.99 9.19 37.16 0.34 -0.65 16 22 C -0.14 -1.42 7.91 37.16 0.29 -1.13 16 23 C 0.71 9.91 8.10 -87.67 -0.71 9.20 16 24 O -0.54 -7.80 15.09 5.31 0.08 -7.72 16 25 N -0.56 -7.92 2.96 -129.77 -0.38 -8.31 16 26 C 0.08 0.89 10.09 59.85 0.60 1.49 16 27 C 0.57 9.48 7.62 -12.69 -0.10 9.38 16 28 O -0.46 -8.60 14.01 5.24 0.07 -8.52 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.45 8.14 -51.91 -0.42 1.03 16 33 H 0.05 1.45 8.14 -51.92 -0.42 1.03 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.10 0.94 7.33 -51.93 -0.38 0.56 16 36 H 0.10 1.00 7.46 -51.93 -0.39 0.61 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.04 0.58 6.03 -51.93 -0.31 0.27 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.68 7.91 -51.93 -0.41 0.27 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.99 7.42 -51.93 -0.39 0.61 16 46 H 0.09 0.89 7.31 -51.93 -0.38 0.51 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -30.76 390.53 -10.21 -40.97 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.45 Total: -2.50 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: -2.59 Total: 15.05 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.11 Total: -57.77 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.15 Total: -16.24 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.09 Total: -1.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.76 -10.21 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013984572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.633 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds