Wall clock time and date at job start Tue Mar 31 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31770 * 118.59452 * 2 1 4 4 C 1.33421 * 121.10527 * 179.97438 * 3 2 1 5 5 S 1.76202 * 120.99426 * 179.97438 * 4 3 2 6 6 C 1.81002 * 99.99938 * 0.02562 * 5 4 3 7 7 C 1.50699 * 109.46903 * 180.02562 * 6 5 4 8 8 H 1.07993 * 120.00100 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99403 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00325 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 119.99620 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47067 * 59.99776 * 11 9 7 13 13 H 1.48495 * 109.46936 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46658 * 299.99668 * 11 9 7 15 15 C 1.40345 * 118.01868 * 0.02562 * 4 3 2 16 16 C 1.40757 * 118.73087 * 359.97438 * 15 4 3 17 17 N 1.31998 * 118.59904 * 180.02562 * 2 1 3 18 18 N 1.37815 * 118.72053 * 180.02562 * 16 15 4 19 19 C 1.46504 * 119.69998 * 179.97438 * 18 16 15 20 20 C 1.52994 * 109.47080 * 90.00194 * 19 18 16 21 21 C 1.53001 * 109.46991 * 174.99909 * 20 19 18 22 22 C 1.53005 * 109.47362 * 294.99711 * 20 19 18 23 23 C 1.34468 * 120.59989 * 0.02562 * 18 16 15 24 24 O 1.21561 * 118.55114 * 180.02562 * 23 18 16 25 25 N 1.34249 * 122.88957 * 359.97438 * 23 18 16 26 26 C 1.46503 * 119.42565 * 180.02562 * 25 23 18 27 27 C 1.35213 * 121.14045 * 0.27451 * 25 23 18 28 28 O 1.21645 * 120.96072 * 179.72852 * 27 25 23 29 29 H 1.08994 * 109.47443 * 90.00513 * 1 2 3 30 30 H 1.09001 * 109.46830 * 210.00218 * 1 2 3 31 31 H 1.08998 * 109.47398 * 329.99838 * 1 2 3 32 32 H 1.09008 * 109.46803 * 300.00342 * 6 5 4 33 33 H 1.08999 * 109.47037 * 59.99890 * 6 5 4 34 34 H 0.97001 * 119.99674 * 179.97438 * 10 9 7 35 35 H 1.09003 * 109.46783 * 210.00495 * 19 18 16 36 36 H 1.09004 * 109.46675 * 329.99805 * 19 18 16 37 37 H 1.08995 * 109.47325 * 55.00117 * 20 19 18 38 38 H 1.09002 * 109.47234 * 60.00122 * 21 20 19 39 39 H 1.09003 * 109.47177 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47291 * 299.99946 * 21 20 19 41 41 H 1.09000 * 109.46686 * 59.99991 * 22 20 19 42 42 H 1.08990 * 109.47397 * 179.97438 * 22 20 19 43 43 H 1.08995 * 109.47232 * 300.00463 * 22 20 19 44 44 H 1.08997 * 109.47252 * 90.00177 * 26 25 23 45 45 H 1.09006 * 109.46757 * 210.00058 * 26 25 23 46 46 H 1.09000 * 109.46983 * 329.99286 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1376 1.1570 0.0000 4 6 3.4706 1.2154 0.0005 5 16 4.3109 2.7642 -0.0002 6 6 2.8940 3.8905 -0.0007 7 6 3.3850 5.3153 -0.0020 8 1 4.4451 5.5211 -0.0028 9 6 2.4806 6.3560 -0.0020 10 7 1.1896 6.1053 -0.0015 11 14 3.0891 8.1222 -0.0029 12 1 3.9118 8.3617 -1.2157 13 1 1.9267 9.0462 -0.0022 14 1 3.9126 8.3625 1.2094 15 6 4.1835 0.0065 0.0005 16 6 3.4640 -1.2033 0.0005 17 7 2.1388 -1.1589 -0.0005 18 7 4.1643 -2.3902 0.0010 19 6 3.4371 -3.6621 0.0016 20 6 3.1840 -4.1054 -1.4406 21 6 2.5363 -5.4916 -1.4418 22 6 2.2499 -3.1055 -2.1252 23 6 5.5090 -2.3916 0.0020 24 8 6.0889 -3.4600 0.0020 25 7 6.2392 -1.2651 0.0021 26 6 7.7015 -1.3551 0.0027 27 6 5.6484 -0.0489 0.0067 28 8 6.3132 0.9698 0.0116 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 2.2898 3.7139 -0.8907 33 1 2.2898 3.7148 0.8893 34 1 0.5533 6.8375 -0.0012 35 1 4.0294 -4.4190 0.5159 36 1 2.4842 -3.5354 0.5155 37 1 4.1305 -4.1463 -1.9796 38 1 1.5897 -5.4508 -0.9028 39 1 2.3555 -5.8073 -2.4693 40 1 3.2017 -6.2040 -0.9541 41 1 2.7114 -2.1180 -2.1243 42 1 2.0700 -3.4211 -3.1528 43 1 1.3035 -3.0647 -1.5862 44 1 8.0645 -1.3777 -1.0248 45 1 8.1186 -0.4890 0.5165 46 1 8.0092 -2.2656 0.5169 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013984572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:16 Heat of formation + Delta-G solvation = -22.325072 kcal Electronic energy + Delta-G solvation = -31375.943138 eV Core-core repulsion = 27198.939944 eV Total energy + Delta-G solvation = -4177.003194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 5.85 seconds Orbital eigenvalues (eV) -43.78567 -41.65770 -40.58568 -38.49991 -36.84913 -35.79712 -35.30752 -34.83349 -33.26980 -30.90809 -30.51876 -28.62746 -28.08875 -27.51042 -26.33134 -25.52183 -24.74336 -24.01103 -21.52627 -20.92610 -20.39393 -19.51155 -18.83214 -18.45034 -18.13934 -17.63776 -17.11692 -16.68743 -16.58000 -16.54025 -16.13297 -16.04284 -15.63013 -15.03396 -14.93726 -14.62611 -14.53160 -14.34337 -14.23680 -13.91556 -13.62915 -13.39878 -13.31250 -13.22119 -13.10674 -12.99369 -12.78661 -12.72008 -12.69924 -12.44097 -12.38190 -12.15635 -11.88613 -11.82158 -11.67766 -11.59929 -11.34733 -11.03053 -10.78389 -10.72601 -10.56247 -10.15136 -8.92031 -8.31735 -6.47554 -0.94937 -0.41868 0.32254 0.60277 0.66996 1.40959 1.43021 1.44090 1.48030 1.56279 1.62190 2.36974 2.46129 2.58331 2.74262 3.02478 3.12186 3.41565 3.63588 3.75865 3.83154 4.02996 4.08293 4.25857 4.35919 4.38855 4.44890 4.55361 4.66124 4.70824 4.71855 4.73792 4.80900 4.83924 4.92545 4.96036 4.96842 5.05985 5.08176 5.18907 5.26744 5.39899 5.43399 5.54702 5.57218 5.83686 5.86465 6.08153 6.53566 6.59869 6.77125 7.20978 8.79603 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.003093 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.011550 B = 9051.610843 C =10776.916664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.392 3.608 3 N -0.564 5.564 4 C 0.230 3.770 5 S 0.024 5.976 6 C 0.055 3.945 7 C -0.551 4.551 8 H 0.065 0.935 9 C 0.022 3.978 10 N -0.915 5.915 11 Si 0.973 3.027 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.266 1.266 15 C -0.330 4.330 16 C 0.468 3.532 17 N -0.540 5.540 18 N -0.515 5.515 19 C 0.118 3.882 20 C -0.105 4.105 21 C -0.135 4.135 22 C -0.135 4.135 23 C 0.710 3.290 24 O -0.538 6.538 25 N -0.559 5.559 26 C 0.077 3.923 27 C 0.568 3.432 28 O -0.486 6.486 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.271 0.729 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -23.324 -0.842 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.123 3.877 3 N -0.287 5.287 4 C -0.026 4.026 5 S 0.271 5.729 6 C -0.093 4.093 7 C -0.590 4.590 8 H 0.083 0.917 9 C -0.180 4.180 10 N -0.552 5.552 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.191 1.191 15 C -0.351 4.351 16 C 0.223 3.777 17 N -0.266 5.266 18 N -0.239 5.239 19 C -0.001 4.001 20 C -0.124 4.124 21 C -0.192 4.192 22 C -0.192 4.192 23 C 0.412 3.588 24 O -0.411 6.411 25 N -0.304 5.304 26 C -0.063 4.063 27 C 0.359 3.641 28 O -0.359 6.359 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.105 0.895 45 H 0.115 0.885 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.405 -22.970 -0.832 23.111 hybrid contribution -0.210 1.017 -0.090 1.042 sum 2.196 -21.954 -0.922 22.082 Atomic orbital electron populations 1.20868 0.81851 1.05781 1.05757 1.24203 0.99721 0.81347 0.82477 1.69146 1.06883 1.30446 1.22247 1.24044 0.92855 0.98218 0.87521 1.86496 1.12547 0.91036 1.82863 1.21108 0.93047 0.95274 0.99865 1.20949 0.93767 0.89868 1.54408 0.91706 1.25850 0.94748 1.03887 0.93502 1.70067 1.01986 1.34228 1.48956 0.85390 0.78114 0.77575 0.79363 1.19096 1.19996 1.19085 1.20288 0.94730 0.94244 1.25807 1.18239 0.89786 0.84180 0.85450 1.68080 1.04874 1.29473 1.24172 1.44811 1.04160 1.07044 1.67932 1.22292 0.97844 0.80487 0.99523 1.21426 0.99360 0.97434 0.94201 1.21686 1.01170 0.93369 1.03003 1.21800 1.00089 0.96648 1.00664 1.15536 0.80914 0.84419 0.77884 1.90981 1.68050 1.27807 1.54263 1.46195 1.11461 1.05014 1.67686 1.22178 0.73064 1.05835 1.05201 1.17813 0.87063 0.83246 0.76006 1.90864 1.65573 1.33022 1.46450 0.87231 0.86259 0.89447 0.95430 0.95386 0.91979 0.87375 0.86458 0.92444 0.90951 0.91611 0.91695 0.96563 0.92315 0.90496 0.89481 0.88488 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.29 71.24 0.73 -0.98 16 2 C 0.39 11.60 7.63 138.70 1.06 12.66 16 3 N -0.56 -21.77 9.23 -183.13 -1.69 -23.47 16 4 C 0.23 9.27 7.06 84.96 0.60 9.87 16 5 S 0.02 1.08 19.43 -56.49 -1.10 -0.01 16 6 C 0.05 2.94 4.65 71.24 0.33 3.28 16 7 C -0.55 -31.20 9.13 25.60 0.23 -30.97 16 8 H 0.06 3.60 7.71 -2.91 -0.02 3.57 16 9 C 0.02 1.25 5.46 84.66 0.46 1.71 16 10 N -0.91 -53.12 13.29 21.45 0.28 -52.83 16 11 Si 0.97 43.05 29.54 68.60 2.03 45.08 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 C -0.33 -11.54 5.90 -19.97 -0.12 -11.66 16 16 C 0.47 13.54 5.89 133.81 0.79 14.33 16 17 N -0.54 -14.30 7.43 -185.21 -1.38 -15.68 16 18 N -0.52 -12.65 2.51 -654.83 -1.64 -14.29 16 19 C 0.12 2.09 4.67 86.38 0.40 2.49 16 20 C -0.10 -1.71 3.13 -10.79 -0.03 -1.74 16 21 C -0.13 -1.45 9.19 71.98 0.66 -0.79 16 22 C -0.13 -2.47 7.91 71.98 0.57 -1.90 16 23 C 0.71 18.66 8.10 179.32 1.45 20.11 16 24 O -0.54 -14.36 15.09 -3.91 -0.06 -14.42 16 25 N -0.56 -15.27 2.96 -801.03 -2.37 -17.64 16 26 C 0.08 1.56 10.09 127.77 1.29 2.85 16 27 C 0.57 19.11 7.62 86.35 0.66 19.77 16 28 O -0.49 -18.51 14.01 -4.17 -0.06 -18.57 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 1.59 8.14 -2.40 -0.02 1.58 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.11 1.75 7.33 -2.39 -0.02 1.74 16 36 H 0.12 1.83 7.46 -2.38 -0.02 1.81 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.02 0.38 6.03 -2.39 -0.01 0.36 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 1.28 7.91 -2.39 -0.02 1.26 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 1.96 7.42 -2.38 -0.02 1.94 16 46 H 0.11 1.86 7.31 -2.39 -0.02 1.84 16 Total: -1.00 -68.80 390.53 4.11 -64.68 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 1.01 Total: 8.12 kcal Atomic # 6 Polarization: 29.94 SS G_CDS: 9.09 Total: 39.03 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.79 Total: -123.91 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.12 Total: -32.99 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -1.10 Total: -0.01 kcal Total: -68.80 4.11 -64.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013984572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.357 kcal (2) G-P(sol) polarization free energy of solvation -68.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.85 seconds