Wall clock time and date at job start Tue Mar 31 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47209 * 274.97958 * 3 2 1 5 5 H 1.48500 * 109.47256 * 34.98050 * 3 2 1 6 6 H 1.48501 * 109.46931 * 154.98209 * 3 2 1 7 7 C 1.40118 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00256 * 173.81943 * 7 2 1 9 9 C 1.46200 * 119.99952 * 353.81811 * 7 2 1 10 10 O 1.21726 * 120.00223 * 6.08870 * 9 7 2 11 11 N 1.34781 * 120.00138 * 186.08480 * 9 7 2 12 12 C 1.39071 * 119.99978 * 185.13134 * 11 9 7 13 13 C 1.39270 * 119.93778 * 33.40637 * 12 11 9 14 14 C 1.37601 * 120.07120 * 180.02562 * 13 12 11 15 15 C 1.39844 * 119.93326 * 0.02562 * 14 13 12 16 16 C 1.47460 * 120.06822 * 180.02562 * 15 14 13 17 17 O 1.21507 * 120.00258 * 359.97438 * 16 15 14 18 18 O 1.34755 * 119.99978 * 179.97438 * 16 15 14 19 19 C 1.45198 * 116.99824 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46673 * 179.97438 * 19 18 16 21 21 N 1.30497 * 125.65233 * 89.97816 * 20 19 18 22 22 C 1.34127 * 109.25846 * 180.02562 * 21 20 19 23 23 C 1.34672 * 108.01991 * 359.97438 * 22 21 20 24 24 N 1.35052 * 125.64779 * 270.28439 * 20 19 18 25 25 C 1.46494 * 126.39727 * 0.02562 * 24 20 19 26 26 F 1.39900 * 109.47170 * 300.14025 * 25 24 20 27 27 F 1.39899 * 109.47501 * 60.14450 * 25 24 20 28 28 C 1.39836 * 119.86214 * 0.27224 * 15 14 13 29 29 C 1.37607 * 119.93098 * 359.47178 * 28 15 14 30 30 H 0.97006 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99617 * 5.12804 * 11 9 7 32 32 H 1.08003 * 119.96075 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.03752 * 179.97438 * 14 13 12 34 34 H 1.08998 * 109.47095 * 60.00101 * 19 18 16 35 35 H 1.08994 * 109.47390 * 299.99960 * 19 18 16 36 36 H 1.08001 * 125.99050 * 180.02562 * 22 21 20 37 37 H 1.07995 * 126.58950 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.46867 * 180.14516 * 25 24 20 39 39 H 1.08001 * 120.03347 * 179.70306 * 28 15 14 40 40 H 1.08001 * 119.96624 * 180.25177 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3826 2.1072 -1.3948 5 1 1.4944 2.6200 0.8026 6 1 3.5866 1.4119 0.5921 7 6 2.0069 -1.2135 0.0005 8 1 3.0822 -1.2163 -0.1002 9 6 1.2823 -2.4758 0.1375 10 8 0.0650 -2.4818 0.1395 11 7 1.9620 -3.6331 0.2613 12 6 1.2766 -4.8430 0.2842 13 6 0.1114 -4.9960 -0.4630 14 6 -0.5692 -6.1917 -0.4420 15 6 -0.0899 -7.2539 0.3311 16 6 -0.8166 -8.5368 0.3554 17 8 -1.8331 -8.6718 -0.2964 18 8 -0.3533 -9.5596 1.1005 19 6 -1.1199 -10.7925 1.0770 20 6 -0.4542 -11.8148 1.9618 21 7 -0.6909 -11.9899 3.2331 22 6 0.0823 -12.9841 3.6943 23 6 0.8261 -13.4429 2.6696 24 7 0.4904 -12.6976 1.5717 25 6 1.0493 -12.8340 0.2244 26 9 0.0242 -13.1403 -0.6770 27 9 1.6576 -11.6317 -0.1521 28 6 1.0769 -7.0952 1.0852 29 6 1.7560 -5.8987 1.0559 30 1 -0.4851 0.8401 -0.0004 31 1 2.9291 -3.6220 0.3345 32 1 -0.2590 -4.1749 -1.0589 33 1 -1.4730 -6.3096 -1.0213 34 1 -1.1670 -11.1716 0.0562 35 1 -2.1294 -10.5996 1.4399 36 1 0.1040 -13.3527 4.7092 37 1 1.5518 -14.2417 2.7081 38 1 1.7901 -13.6336 0.2176 39 1 1.4469 -7.9122 1.6870 40 1 2.6595 -5.7769 1.6349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014094344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:37 Heat of formation + Delta-G solvation = -116.047493 kcal Electronic energy + Delta-G solvation = -31251.467755 eV Core-core repulsion = 26283.008308 eV Total energy + Delta-G solvation = -4968.459447 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.102 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.87352 -47.94696 -42.63565 -40.38864 -39.15397 -37.07883 -36.31996 -34.09810 -33.66614 -32.59222 -31.61723 -30.54212 -29.57433 -27.41468 -26.61603 -26.21327 -23.52848 -22.43948 -22.31698 -21.04834 -20.89833 -19.90950 -18.91470 -18.38626 -18.05051 -17.92172 -17.48992 -16.91753 -16.39852 -16.26687 -15.60985 -15.45286 -15.33493 -14.77580 -14.67889 -14.48984 -14.41032 -14.25946 -14.05879 -13.77665 -13.68335 -13.37080 -13.21020 -12.90519 -12.79816 -12.68101 -12.56230 -12.03596 -11.89042 -11.37860 -11.15789 -10.87440 -10.82364 -10.75726 -10.68349 -10.56089 -10.42423 -10.41255 -9.51556 -9.11599 -8.99664 -8.62837 -7.89902 -7.31912 -6.45746 -4.92534 1.06148 1.12158 1.47621 1.86254 2.30232 2.81572 2.88137 2.98903 3.02323 3.09642 3.13388 3.43575 3.80473 3.90805 3.97477 4.01134 4.12038 4.43238 4.44062 4.61546 4.82147 4.84847 5.06569 5.15882 5.28382 5.34633 5.45436 5.50393 5.76632 5.91136 6.04840 6.06956 6.20784 6.28900 6.42842 6.59036 6.83269 6.88996 7.15768 7.21201 7.42483 7.58012 7.85999 7.88376 8.02411 8.74658 9.03717 10.24008 10.44799 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.001759 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.436399 B =15914.832773 C =16030.843312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.538 3.462 10 O -0.555 6.555 11 N -0.694 5.694 12 C 0.238 3.762 13 C -0.147 4.147 14 C -0.027 4.027 15 C -0.187 4.187 16 C 0.522 3.478 17 O -0.516 6.516 18 O -0.348 6.348 19 C 0.149 3.851 20 C 0.226 3.774 21 N -0.454 5.454 22 C -0.011 4.011 23 C -0.036 4.036 24 N -0.506 5.506 25 C 0.475 3.525 26 F -0.180 7.180 27 F -0.171 7.171 28 C -0.033 4.033 29 C -0.196 4.196 30 H 0.274 0.726 31 H 0.397 0.603 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.183 0.817 37 H 0.189 0.811 38 H 0.163 0.837 39 H 0.129 0.871 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -27.251 2.467 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.137 4.137 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.345 3.655 10 O -0.436 6.436 11 N -0.335 5.335 12 C 0.136 3.864 13 C -0.168 4.168 14 C -0.046 4.046 15 C -0.189 4.189 16 C 0.369 3.631 17 O -0.406 6.406 18 O -0.264 6.264 19 C 0.073 3.927 20 C -0.035 4.035 21 N -0.173 5.173 22 C -0.158 4.158 23 C -0.165 4.165 24 N -0.202 5.202 25 C 0.339 3.661 26 F -0.161 7.161 27 F -0.152 7.152 28 C -0.052 4.052 29 C -0.217 4.217 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.200 0.800 37 H 0.206 0.794 38 H 0.179 0.821 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.332 -26.593 2.553 27.064 hybrid contribution 1.436 0.230 -0.406 1.510 sum 5.767 -26.362 2.147 27.071 Atomic orbital electron populations 1.69978 1.07234 1.28088 1.32941 1.25764 0.94727 1.00665 0.92501 0.86239 0.80229 0.80808 0.78909 1.19581 1.20157 1.18652 1.20860 0.94459 0.89089 1.52739 0.90762 1.18477 0.87496 0.82010 0.77483 1.90659 1.13593 1.85488 1.53866 1.44324 1.10097 1.04445 1.74618 1.18306 0.92231 0.86158 0.89728 1.21301 0.96720 0.97564 1.01250 1.21048 0.98027 0.90703 0.94817 1.18717 0.99934 0.91470 1.08815 1.21286 0.82780 0.83583 0.75426 1.90817 1.24826 1.82823 1.42126 1.86612 1.53299 1.21361 1.65149 1.20937 0.94440 0.79919 0.97384 1.22798 0.93533 0.94950 0.92210 1.70350 1.24048 1.16644 1.06256 1.22552 0.96812 0.96517 0.99894 1.22819 1.06101 1.01934 0.85620 1.46705 1.33253 1.30443 1.09818 1.21414 0.83931 0.86161 0.74580 1.93143 1.62398 1.92891 1.67663 1.93206 1.82297 1.48988 1.90692 1.21015 0.92421 0.96693 0.95053 1.20850 1.03682 0.94136 1.03068 0.91522 0.76882 0.83379 0.85037 0.89385 0.87345 0.80008 0.79403 0.82075 0.85348 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.34 11.85 55.55 0.66 -20.68 16 2 C 0.09 2.23 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.91 29.56 -169.99 -5.03 13.89 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.54 -14.05 9.53 -35.68 -0.34 -14.39 16 8 H 0.07 1.75 7.86 -52.49 -0.41 1.34 16 9 C 0.54 14.28 7.46 -13.06 -0.10 14.18 16 10 O -0.55 -16.72 12.70 5.17 0.07 -16.65 16 11 N -0.69 -14.69 5.30 -11.18 -0.06 -14.75 16 12 C 0.24 4.73 6.27 -83.81 -0.53 4.21 16 13 C -0.15 -3.05 8.62 -39.43 -0.34 -3.39 16 14 C -0.03 -0.49 9.58 -39.21 -0.38 -0.87 16 15 C -0.19 -3.20 5.88 -104.94 -0.62 -3.82 16 16 C 0.52 8.66 7.89 34.49 0.27 8.94 16 17 O -0.52 -9.40 16.13 -19.27 -0.31 -9.71 16 18 O -0.35 -5.10 9.44 -40.64 -0.38 -5.49 16 19 C 0.15 1.85 5.71 36.01 0.21 2.05 16 20 C 0.23 2.59 7.46 -155.41 -1.16 1.43 16 21 N -0.45 -5.51 11.25 -10.81 -0.12 -5.63 16 22 C -0.01 -0.09 11.87 -17.81 -0.21 -0.30 16 23 C -0.04 -0.21 11.54 -16.56 -0.19 -0.40 16 24 N -0.51 -4.14 3.01 -119.65 -0.36 -4.50 16 25 C 0.47 2.85 5.74 59.84 0.34 3.19 16 26 F -0.18 -1.37 16.52 2.25 0.04 -1.33 16 27 F -0.17 -1.54 17.42 2.25 0.04 -1.50 16 28 C -0.03 -0.51 9.60 -39.21 -0.38 -0.89 16 29 C -0.20 -3.23 9.94 -39.43 -0.39 -3.62 16 30 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 31 H 0.40 7.03 8.79 -40.82 -0.36 6.67 16 32 H 0.15 3.46 6.39 -52.48 -0.34 3.13 16 33 H 0.13 2.30 7.64 -52.48 -0.40 1.90 16 34 H 0.09 1.02 6.98 -51.93 -0.36 0.66 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.19 0.23 8.06 -52.49 -0.42 -0.19 16 38 H 0.16 0.09 8.08 -51.93 -0.42 -0.32 16 39 H 0.13 1.75 7.60 -52.49 -0.40 1.35 16 40 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -36.25 371.04 -7.28 -43.53 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.51 Total: 8.78 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -3.90 Total: 8.46 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.12 Total: -45.57 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -0.63 Total: -31.85 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.25 -7.28 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.515 kcal (2) G-P(sol) polarization free energy of solvation -36.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds