Wall clock time and date at job start Tue Mar 31 2020 06:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86796 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47209 * 274.97958 * 3 2 1 5 5 H 1.48500 * 109.47256 * 34.98050 * 3 2 1 6 6 H 1.48501 * 109.46931 * 154.98209 * 3 2 1 7 7 C 1.40118 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00256 * 173.81943 * 7 2 1 9 9 C 1.46200 * 119.99952 * 353.81811 * 7 2 1 10 10 O 1.21726 * 120.00223 * 6.08870 * 9 7 2 11 11 N 1.34781 * 120.00138 * 186.08480 * 9 7 2 12 12 C 1.39071 * 119.99978 * 185.13134 * 11 9 7 13 13 C 1.39270 * 119.93778 * 33.40637 * 12 11 9 14 14 C 1.37601 * 120.07120 * 180.02562 * 13 12 11 15 15 C 1.39844 * 119.93326 * 0.02562 * 14 13 12 16 16 C 1.47460 * 120.06822 * 180.02562 * 15 14 13 17 17 O 1.21507 * 120.00258 * 359.97438 * 16 15 14 18 18 O 1.34755 * 119.99978 * 179.97438 * 16 15 14 19 19 C 1.45198 * 116.99824 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46673 * 179.97438 * 19 18 16 21 21 N 1.30497 * 125.65233 * 89.97816 * 20 19 18 22 22 C 1.34127 * 109.25846 * 180.02562 * 21 20 19 23 23 C 1.34672 * 108.01991 * 359.97438 * 22 21 20 24 24 N 1.35052 * 125.64779 * 270.28439 * 20 19 18 25 25 C 1.46494 * 126.39727 * 0.02562 * 24 20 19 26 26 F 1.39900 * 109.47170 * 300.14025 * 25 24 20 27 27 F 1.39899 * 109.47501 * 60.14450 * 25 24 20 28 28 C 1.39836 * 119.86214 * 0.27224 * 15 14 13 29 29 C 1.37607 * 119.93098 * 359.47178 * 28 15 14 30 30 H 0.97006 * 120.00145 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99617 * 5.12804 * 11 9 7 32 32 H 1.08003 * 119.96075 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.03752 * 179.97438 * 14 13 12 34 34 H 1.08998 * 109.47095 * 60.00101 * 19 18 16 35 35 H 1.08994 * 109.47390 * 299.99960 * 19 18 16 36 36 H 1.08001 * 125.99050 * 180.02562 * 22 21 20 37 37 H 1.07995 * 126.58950 * 179.97438 * 23 22 21 38 38 H 1.09004 * 109.46867 * 180.14516 * 25 24 20 39 39 H 1.08001 * 120.03347 * 179.70306 * 28 15 14 40 40 H 1.08001 * 119.96624 * 180.25177 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.3826 2.1072 -1.3948 5 1 1.4944 2.6200 0.8026 6 1 3.5866 1.4119 0.5921 7 6 2.0069 -1.2135 0.0005 8 1 3.0822 -1.2163 -0.1002 9 6 1.2823 -2.4758 0.1375 10 8 0.0650 -2.4818 0.1395 11 7 1.9620 -3.6331 0.2613 12 6 1.2766 -4.8430 0.2842 13 6 0.1114 -4.9960 -0.4630 14 6 -0.5692 -6.1917 -0.4420 15 6 -0.0899 -7.2539 0.3311 16 6 -0.8166 -8.5368 0.3554 17 8 -1.8331 -8.6718 -0.2964 18 8 -0.3533 -9.5596 1.1005 19 6 -1.1199 -10.7925 1.0770 20 6 -0.4542 -11.8148 1.9618 21 7 -0.6909 -11.9899 3.2331 22 6 0.0823 -12.9841 3.6943 23 6 0.8261 -13.4429 2.6696 24 7 0.4904 -12.6976 1.5717 25 6 1.0493 -12.8340 0.2244 26 9 0.0242 -13.1403 -0.6770 27 9 1.6576 -11.6317 -0.1521 28 6 1.0769 -7.0952 1.0852 29 6 1.7560 -5.8987 1.0559 30 1 -0.4851 0.8401 -0.0004 31 1 2.9291 -3.6220 0.3345 32 1 -0.2590 -4.1749 -1.0589 33 1 -1.4730 -6.3096 -1.0213 34 1 -1.1670 -11.1716 0.0562 35 1 -2.1294 -10.5996 1.4399 36 1 0.1040 -13.3527 4.7092 37 1 1.5518 -14.2417 2.7081 38 1 1.7901 -13.6336 0.2176 39 1 1.4469 -7.9122 1.6870 40 1 2.6595 -5.7769 1.6349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014094344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:36 Heat of formation + Delta-G solvation = -139.962772 kcal Electronic energy + Delta-G solvation = -31252.504799 eV Core-core repulsion = 26283.008308 eV Total energy + Delta-G solvation = -4969.496491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.102 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.38330 -48.48072 -43.26123 -41.72153 -40.75436 -38.77431 -37.65784 -35.45039 -34.70565 -34.59397 -32.51957 -31.95816 -31.07123 -28.61854 -27.96414 -26.93663 -25.01489 -23.92157 -22.86178 -22.48156 -21.66977 -21.57296 -19.61911 -19.58140 -19.09731 -18.84930 -18.45149 -18.23652 -17.75042 -17.57127 -17.54250 -16.22521 -16.12194 -15.99946 -15.70712 -15.55623 -15.42338 -15.22979 -15.03926 -14.80809 -14.79151 -14.61150 -14.43755 -14.27134 -14.21153 -13.80561 -13.55542 -13.49015 -13.26975 -13.15187 -12.82668 -12.72605 -12.21941 -12.03805 -12.01746 -11.80602 -11.42571 -11.23298 -11.20750 -10.92069 -10.15233 -9.87267 -9.69586 -8.98141 -8.41153 -6.97755 -0.33313 0.36817 0.41715 0.98826 1.34995 1.40900 1.45201 1.46362 1.57988 2.09091 2.19312 2.33612 2.53183 2.75666 2.84465 2.98501 3.14601 3.40758 3.51359 3.52982 3.66338 3.84377 3.93883 3.97522 4.06892 4.32847 4.39744 4.43564 4.51923 4.61693 4.88871 4.96182 5.00343 5.20292 5.24000 5.33981 5.36025 5.57838 5.60437 5.63862 5.75732 6.11524 6.21639 6.55810 6.74932 6.79195 7.24227 8.27846 8.52517 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.023108 B = 0.001759 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.436399 B =15914.832773 C =16030.843312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.560 4.560 8 H 0.098 0.902 9 C 0.526 3.474 10 O -0.603 6.603 11 N -0.685 5.685 12 C 0.212 3.788 13 C -0.168 4.168 14 C -0.031 4.031 15 C -0.185 4.185 16 C 0.527 3.473 17 O -0.537 6.537 18 O -0.344 6.344 19 C 0.150 3.850 20 C 0.186 3.814 21 N -0.489 5.489 22 C -0.044 4.044 23 C 0.003 3.997 24 N -0.505 5.505 25 C 0.466 3.534 26 F -0.193 7.193 27 F -0.191 7.191 28 C -0.019 4.019 29 C -0.175 4.175 30 H 0.279 0.721 31 H 0.414 0.586 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.205 0.795 37 H 0.244 0.756 38 H 0.228 0.772 39 H 0.161 0.839 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -29.731 3.725 31.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.167 1.167 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.334 3.666 10 O -0.489 6.489 11 N -0.328 5.328 12 C 0.112 3.888 13 C -0.189 4.189 14 C -0.050 4.050 15 C -0.187 4.187 16 C 0.375 3.625 17 O -0.428 6.428 18 O -0.260 6.260 19 C 0.075 3.925 20 C -0.074 4.074 21 N -0.210 5.210 22 C -0.190 4.190 23 C -0.126 4.126 24 N -0.201 5.201 25 C 0.331 3.669 26 F -0.175 7.175 27 F -0.173 7.173 28 C -0.038 4.038 29 C -0.196 4.196 30 H 0.089 0.911 31 H 0.251 0.749 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.109 0.891 35 H 0.119 0.881 36 H 0.221 0.779 37 H 0.260 0.740 38 H 0.244 0.756 39 H 0.178 0.822 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.862 -29.136 3.804 30.417 hybrid contribution 0.336 0.698 -0.743 1.074 sum 8.197 -28.438 3.061 29.754 Atomic orbital electron populations 1.70144 1.09662 1.29541 1.34617 1.27035 0.95528 1.05149 0.91117 0.84941 0.79032 0.74756 0.79252 1.18722 1.19913 1.16740 1.21417 0.95728 0.89527 1.52901 0.88418 1.18809 0.87146 0.83721 0.76956 1.90625 1.15683 1.86666 1.55906 1.43801 1.10761 1.03736 1.74550 1.18513 0.92442 0.86706 0.91188 1.21046 0.98134 0.97364 1.02337 1.20993 0.98023 0.90562 0.95385 1.18868 1.00383 0.91334 1.08144 1.21120 0.82268 0.83872 0.75263 1.90808 1.25718 1.83282 1.43042 1.86581 1.53409 1.21793 1.64175 1.20987 0.94217 0.79228 0.98107 1.22390 0.96172 0.96555 0.92280 1.70236 1.25392 1.18336 1.07012 1.23108 0.97464 0.96619 1.01818 1.23699 1.04483 1.00798 0.83655 1.46936 1.32250 1.29695 1.11219 1.22457 0.84430 0.86826 0.73145 1.93116 1.63350 1.92859 1.68128 1.93160 1.82540 1.50757 1.90832 1.21331 0.91181 0.97171 0.94100 1.21138 1.04272 0.92707 1.01481 0.91140 0.74886 0.87195 0.85064 0.89071 0.88136 0.77867 0.73963 0.75648 0.82169 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.72 11.85 21.85 0.26 -47.46 16 2 C 0.03 1.51 5.50 85.33 0.47 1.98 16 3 Si 1.00 38.73 29.56 68.60 2.03 40.76 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.24 -8.65 7.11 99.48 0.71 -7.95 16 7 C -0.56 -29.79 9.53 24.80 0.24 -29.55 16 8 H 0.10 4.54 7.86 -2.91 -0.02 4.52 16 9 C 0.53 28.99 7.46 86.31 0.64 29.64 16 10 O -0.60 -38.60 12.70 -4.43 -0.06 -38.66 16 11 N -0.69 -29.46 5.30 -307.50 -1.63 -31.09 16 12 C 0.21 8.54 6.27 38.49 0.24 8.78 16 13 C -0.17 -7.37 8.62 22.37 0.19 -7.17 16 14 C -0.03 -1.18 9.58 22.51 0.22 -0.96 16 15 C -0.18 -6.29 5.88 -20.07 -0.12 -6.41 16 16 C 0.53 17.48 7.89 70.25 0.55 18.04 16 17 O -0.54 -20.00 16.13 19.81 0.32 -19.68 16 18 O -0.34 -9.88 9.44 -56.66 -0.54 -10.41 16 19 C 0.15 3.74 5.71 71.24 0.41 4.15 16 20 C 0.19 4.08 7.46 138.13 1.03 5.11 16 21 N -0.49 -11.44 11.25 -188.12 -2.12 -13.56 16 22 C -0.04 -0.62 11.87 83.52 0.99 0.37 16 23 C 0.00 0.02 11.54 83.09 0.96 0.98 16 24 N -0.51 -6.78 3.01 -532.46 -1.60 -8.38 16 25 C 0.47 4.05 5.74 127.77 0.73 4.78 16 26 F -0.19 -2.58 16.52 44.97 0.74 -1.84 16 27 F -0.19 -3.02 17.42 44.97 0.78 -2.23 16 28 C -0.02 -0.56 9.60 22.51 0.22 -0.34 16 29 C -0.18 -5.41 9.94 22.37 0.22 -5.19 16 30 H 0.28 14.85 8.29 -92.70 -0.77 14.08 16 31 H 0.41 14.39 8.79 -92.71 -0.81 13.57 16 32 H 0.11 5.67 6.39 -2.91 -0.02 5.65 16 33 H 0.13 4.94 7.64 -2.91 -0.02 4.92 16 34 H 0.09 2.15 6.98 -2.39 -0.02 2.13 16 35 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.24 -1.10 8.06 -2.91 -0.02 -1.12 16 38 H 0.23 -1.03 8.08 -2.38 -0.02 -1.05 16 39 H 0.16 3.76 7.60 -2.91 -0.02 3.74 16 40 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -86.17 371.04 5.51 -80.66 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.33 Total: 27.72 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 7.00 Total: 24.18 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -5.09 Total: -100.49 kcal Atomic # 8 Polarization: -68.48 SS G_CDS: -0.27 Total: -68.75 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.53 Total: -4.07 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -86.17 5.51 -80.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014094344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.306 kcal (2) G-P(sol) polarization free energy of solvation -86.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds