Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47239 * 126.10681 * 3 2 1 5 5 N 1.46493 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99717 * 270.00011 * 5 4 3 7 7 C 1.50699 * 109.47166 * 269.99435 * 6 5 4 8 8 H 1.08011 * 119.99847 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99642 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99994 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47306 * 60.00138 * 11 9 7 13 13 H 1.48506 * 109.47168 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47359 * 299.99854 * 11 9 7 15 15 C 1.34777 * 120.00157 * 89.99641 * 5 4 3 16 16 O 1.21280 * 120.00044 * 180.02562 * 15 5 4 17 17 C 1.50699 * 120.00118 * 0.02562 * 15 5 4 18 18 O 1.42893 * 109.47160 * 179.97438 * 17 15 5 19 19 C 1.35677 * 117.00140 * 179.97438 * 18 17 15 20 20 C 1.38708 * 120.13330 * 0.02562 * 19 18 17 21 21 C 1.38050 * 120.09404 * 179.97438 * 20 19 18 22 22 C 1.38639 * 120.38315 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 119.86559 * 180.02562 * 22 21 20 24 24 C 1.37897 * 120.27367 * 359.76666 * 22 21 20 25 25 C 1.39714 * 119.88709 * 0.50667 * 24 22 21 26 26 C 1.47541 * 120.18156 * 179.74405 * 25 24 22 27 27 N 1.34777 * 119.99728 * 359.72547 * 26 25 24 28 28 O 1.21583 * 120.00002 * 179.72855 * 26 25 24 29 29 H 1.08996 * 109.47212 * 6.10364 * 3 2 1 30 30 H 1.09000 * 109.46523 * 246.10315 * 3 2 1 31 31 H 1.09002 * 109.46992 * 59.99416 * 4 3 2 32 32 H 1.09000 * 109.46901 * 299.99832 * 4 3 2 33 33 H 1.08996 * 109.47588 * 29.99793 * 6 5 4 34 34 H 1.08997 * 109.47049 * 150.00204 * 6 5 4 35 35 H 0.97004 * 119.99665 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.47227 * 59.99418 * 17 15 5 37 37 H 1.09005 * 109.46640 * 299.99818 * 17 15 5 38 38 H 1.07994 * 119.94837 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.80403 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.05569 * 180.25718 * 24 22 21 41 41 H 0.97001 * 120.00485 * 0.02562 * 27 26 25 42 42 H 0.97005 * 119.99790 * 179.72373 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8509 -1.1654 5 7 4.5826 0.8521 -1.1650 6 6 5.3140 1.8778 -0.4173 7 6 5.5646 3.0666 -1.3090 8 1 5.2136 3.0590 -2.3305 9 6 6.2409 4.1644 -0.8206 10 7 6.6677 4.1739 0.4232 11 14 6.5507 5.6382 -1.9258 12 1 5.2527 6.1925 -2.3871 13 1 7.2923 6.6779 -1.1679 14 1 7.3542 5.2155 -3.1009 15 6 5.2574 -0.0905 -1.8525 16 8 6.4702 -0.0898 -1.8518 17 6 4.5050 -1.1454 -2.6220 18 8 5.4345 -2.0219 -3.2620 19 6 4.9169 -3.0355 -4.0008 20 6 3.5424 -3.1860 -4.1102 21 6 3.0167 -4.2172 -4.8625 22 6 3.8556 -5.1084 -5.5138 23 17 3.1800 -6.4000 -6.4569 24 6 5.2244 -4.9701 -5.4200 25 6 5.7687 -3.9340 -4.6569 26 6 7.2323 -3.7833 -4.5474 27 7 8.0481 -4.6498 -5.1800 28 8 7.7024 -2.8775 -3.8866 29 1 2.9718 -1.0210 -0.1093 30 1 2.9710 0.4171 0.9396 31 1 2.7538 1.8726 -1.0561 32 1 2.7545 0.4345 -2.1050 33 1 4.7245 2.1885 0.4452 34 1 6.2667 1.4706 -0.0787 35 1 7.1438 4.9461 0.7667 36 1 3.8784 -0.6680 -3.3753 37 1 3.8783 -1.7169 -1.9373 38 1 2.8826 -2.4950 -3.6068 39 1 1.9457 -4.3298 -4.9449 40 1 5.8745 -5.6638 -5.9321 41 1 7.6730 -5.3722 -5.7075 42 1 9.0103 -4.5483 -5.1113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014112697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -53.191779 kcal Electronic energy + Delta-G solvation = -29659.772089 eV Core-core repulsion = 25245.834951 eV Total energy + Delta-G solvation = -4413.937138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.097 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.94559 -39.51305 -38.62513 -37.83704 -36.91231 -36.46033 -35.28344 -33.87004 -32.93977 -31.58551 -30.93094 -30.44276 -28.90133 -26.69836 -24.62069 -24.11917 -23.26715 -22.19928 -21.02649 -18.99921 -18.80870 -17.76739 -17.67114 -17.17321 -16.56690 -16.43405 -16.29061 -16.12571 -15.65813 -15.27233 -15.01309 -14.82908 -14.75019 -14.29894 -14.12575 -13.77219 -13.68762 -13.55199 -13.30183 -12.94949 -12.64872 -12.53310 -12.41496 -12.29004 -11.93938 -11.79849 -11.71031 -11.39055 -11.30738 -11.09834 -10.99546 -10.81819 -10.62857 -10.20493 -10.00037 -9.75668 -9.75368 -9.60907 -9.07486 -8.49804 -8.47700 -7.93399 -6.09764 -4.14589 0.39311 0.78108 1.72894 2.58826 2.61791 2.69679 2.73335 3.15180 3.30671 3.30892 3.35731 3.39437 3.46036 3.66020 4.07882 4.23931 4.28699 4.41673 4.53502 4.75748 4.78525 4.81622 4.92258 4.95585 5.04567 5.08719 5.20316 5.25965 5.32495 5.36355 5.66374 5.69839 5.72831 5.96415 6.00507 6.67897 6.79550 7.03947 7.21066 7.29945 7.37953 7.49480 7.85777 8.11813 8.15574 8.22925 8.77583 8.92095 9.50964 10.98441 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.002651 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.056899 B =10558.985570 C =12632.370359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.053 4.053 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.247 3.753 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.508 3.492 16 O -0.492 6.492 17 C 0.027 3.973 18 O -0.245 6.245 19 C 0.198 3.802 20 C -0.210 4.210 21 C -0.039 4.039 22 C -0.088 4.088 23 Cl -0.069 7.069 24 C -0.037 4.037 25 C -0.163 4.163 26 C 0.556 3.444 27 N -0.858 5.858 28 O -0.491 6.491 29 H 0.105 0.895 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.395 0.605 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -21.597 -11.008 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.012 4.012 5 N -0.329 5.329 6 C 0.129 3.871 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.291 3.709 16 O -0.365 6.365 17 C -0.052 4.052 18 O -0.153 6.153 19 C 0.148 3.852 20 C -0.229 4.229 21 C -0.058 4.058 22 C -0.115 4.115 23 Cl -0.040 7.040 24 C -0.057 4.057 25 C -0.168 4.168 26 C 0.340 3.660 27 N -0.424 5.424 28 O -0.364 6.364 29 H 0.123 0.877 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.224 0.776 42 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -7.899 -20.834 -10.394 24.586 hybrid contribution 0.341 0.390 -0.930 1.064 sum -7.558 -20.444 -11.323 24.562 Atomic orbital electron populations 1.81222 1.12996 1.08978 1.08800 1.29077 0.95061 0.92989 0.93116 1.19928 0.81421 1.03886 1.04178 1.21362 0.82210 1.01780 0.95875 1.48153 1.04779 1.29531 1.50389 1.19397 0.92718 0.84153 0.90822 1.21366 1.37130 1.00153 0.98383 0.92362 1.24904 0.95187 0.98643 0.95148 1.69904 1.38093 1.30748 1.14404 0.86568 0.78398 0.81852 0.80691 1.20245 1.21180 1.20102 1.19616 0.88259 0.82133 0.80848 1.90815 1.13073 1.72734 1.59862 1.22961 0.92424 0.92261 0.97556 1.86507 1.33230 1.36338 1.59261 1.19201 0.91132 0.86705 0.88141 1.21291 0.93595 1.02306 1.05708 1.21015 1.00355 0.91620 0.92815 1.20561 0.93063 0.95210 1.02690 1.98374 1.85377 1.48786 1.71450 1.20972 0.93433 0.95733 0.95531 1.19222 0.93479 0.98758 1.05329 1.17897 0.85974 0.82238 0.79890 1.43735 1.10472 1.33295 1.54944 1.91063 1.76284 1.30924 1.38160 0.87661 0.86163 0.88246 0.90902 0.94371 0.93349 0.92556 0.89031 0.89279 0.83548 0.84074 0.84037 0.77590 0.76298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.04 18.54 42.15 0.78 -5.26 16 2 C 0.22 2.36 15.43 -20.76 -0.32 2.04 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.11 1.38 5.17 -4.05 -0.02 1.36 16 5 N -0.59 -10.57 2.46 -175.07 -0.43 -11.00 16 6 C 0.25 5.78 5.16 -5.19 -0.03 5.75 16 7 C -0.53 -14.12 9.39 -34.44 -0.32 -14.44 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.46 13.29 55.43 0.74 -24.73 16 11 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 C 0.51 9.57 7.75 -10.99 -0.09 9.48 16 16 O -0.49 -12.31 16.08 -14.35 -0.23 -12.55 16 17 C 0.03 0.35 3.77 36.01 0.14 0.49 16 18 O -0.24 -3.91 7.74 -49.00 -0.38 -4.29 16 19 C 0.20 2.45 6.70 -38.70 -0.26 2.19 16 20 C -0.21 -1.86 9.03 -39.48 -0.36 -2.21 16 21 C -0.04 -0.30 9.81 -39.50 -0.39 -0.68 16 22 C -0.09 -0.70 6.31 -39.56 -0.25 -0.95 16 23 Cl -0.07 -0.49 28.94 -51.86 -1.50 -1.99 16 24 C -0.04 -0.30 9.31 -39.16 -0.36 -0.66 16 25 C -0.16 -1.86 5.89 -104.85 -0.62 -2.48 16 26 C 0.56 7.34 8.04 -12.47 -0.10 7.24 16 27 N -0.86 -6.88 8.82 30.46 0.27 -6.62 16 28 O -0.49 -9.41 15.99 -16.60 -0.27 -9.67 16 29 H 0.11 0.76 7.22 -51.93 -0.38 0.38 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 33 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 34 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 36 H 0.09 0.95 6.92 -51.93 -0.36 0.59 16 37 H 0.09 0.81 6.71 -51.93 -0.35 0.46 16 38 H 0.15 0.96 6.30 -52.49 -0.33 0.63 16 39 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.14 0.70 6.40 -52.49 -0.34 0.36 16 41 H 0.40 1.76 6.86 -40.82 -0.28 1.48 16 42 H 0.41 2.90 8.93 -40.82 -0.36 2.54 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -38.53 387.62 -7.79 -46.32 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -4.34 Total: -0.44 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -3.25 Total: 8.09 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: 1.36 Total: -47.59 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.88 Total: -26.51 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.53 -7.79 -46.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014112697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.873 kcal (2) G-P(sol) polarization free energy of solvation -38.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds