Wall clock time and date at job start Tue Mar 31 2020 07:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47614 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47277 * 119.99668 * 8 6 4 11 11 H 1.48506 * 109.47103 * 239.99349 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 S 1.81000 * 109.46881 * 180.02562 * 14 12 2 16 16 C 1.76206 * 99.99929 * 180.02562 * 15 14 12 17 17 N 1.31277 * 125.58253 * 0.02562 * 16 15 14 18 18 C 1.34240 * 108.81770 * 179.97438 * 17 16 15 19 19 C 1.35648 * 107.65606 * 0.02562 * 18 17 16 20 20 C 1.47701 * 126.49352 * 179.97438 * 19 18 17 21 21 C 1.39649 * 120.13873 * 359.72371 * 20 19 18 22 22 C 1.37925 * 119.85644 * 179.78968 * 21 20 19 23 23 C 1.38482 * 120.13951 * 0.48412 * 22 21 20 24 24 Cl 1.73603 * 119.85810 * 179.72410 * 23 22 21 25 25 C 1.38479 * 120.28144 * 359.74693 * 23 22 21 26 26 C 1.37926 * 120.13803 * 0.02562 * 25 23 22 27 27 O 1.34286 * 125.58312 * 179.71768 * 16 15 14 28 28 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 29 29 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 30 30 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 31 31 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 32 32 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 33 33 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 35 35 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 36 36 H 1.07993 * 126.17035 * 180.02562 * 18 17 16 37 37 H 1.07998 * 120.07217 * 359.97438 * 21 20 19 38 38 H 1.07998 * 119.92882 * 180.23204 * 22 21 20 39 39 H 1.07997 * 119.93253 * 179.97438 * 25 23 22 40 40 H 1.07995 * 120.06751 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.8598 2.4170 -4.3674 10 1 2.8007 4.7380 -3.6666 11 1 4.9002 3.5246 -3.6679 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 16 2.5615 -3.8481 -0.0005 16 6 1.4413 -5.2082 -0.0013 17 7 0.1316 -5.1192 -0.0022 18 6 -0.3866 -6.3576 -0.0031 19 6 0.6469 -7.2360 -0.0022 20 6 0.5473 -8.7097 -0.0022 21 6 -0.7050 -9.3278 0.0026 22 6 -0.7913 -10.7043 -0.0018 23 6 0.3604 -11.4732 -0.0009 24 17 0.2432 -13.2053 0.0008 25 6 1.6051 -10.8664 -0.0008 26 6 1.7049 -9.4907 -0.0011 27 8 1.7876 -6.5057 -0.0069 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4434 -0.8505 34 1 0.7583 -2.5299 -0.8903 35 1 0.7590 -2.5303 0.8897 36 1 -1.4369 -6.6090 -0.0044 37 1 -1.6039 -8.7292 0.0068 38 1 -1.7592 -11.1835 -0.0019 39 1 2.4997 -11.4715 0.0004 40 1 2.6762 -9.0187 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014163193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:39:34 Heat of formation + Delta-G solvation = 16.450724 kcal Electronic energy + Delta-G solvation = -25659.415753 eV Core-core repulsion = 21593.532749 eV Total energy + Delta-G solvation = -4065.883004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.059 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -43.42260 -39.71618 -39.09822 -37.01039 -35.09296 -35.02052 -32.86992 -32.72987 -31.71996 -30.29573 -28.91831 -27.49534 -25.78577 -24.27898 -24.01334 -22.84530 -22.38132 -21.61216 -19.31803 -18.46874 -17.70362 -17.03547 -16.69830 -16.65875 -16.50733 -16.01442 -15.56853 -15.31336 -15.16000 -14.59356 -14.31577 -14.15265 -14.09503 -13.79705 -13.70176 -13.31709 -12.77616 -12.50161 -12.31753 -12.25813 -12.09998 -12.09555 -11.95657 -11.71927 -11.36639 -11.29481 -10.98209 -10.92814 -10.76277 -10.60158 -10.38554 -10.22462 -9.69487 -9.69093 -9.27181 -9.00437 -8.49401 -7.83450 -7.62367 -6.10385 -4.15577 -0.00086 0.56961 0.69036 1.34714 1.57480 1.84765 2.29484 2.63547 3.11148 3.13319 3.27071 3.35144 3.39080 3.75924 4.07661 4.25366 4.27994 4.39811 4.45908 4.62636 4.75644 4.80507 4.88920 5.02751 5.03756 5.24625 5.26484 5.31703 5.39615 5.58978 5.59216 5.62794 5.78831 5.83900 5.89149 6.09327 6.13388 6.88444 7.19161 7.31640 7.38537 7.84921 8.14179 8.17892 8.70556 8.90856 9.49808 10.97824 Molecular weight = 366.06amu Principal moments of inertia in cm(-1) A = 0.029294 B = 0.001457 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.601093 B =19207.129274 C =19442.806557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.590 5.590 3 C 0.245 3.755 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.522 3.478 13 O -0.528 6.528 14 C -0.150 4.150 15 S 0.133 5.867 16 C 0.168 3.832 17 N -0.489 5.489 18 C 0.006 3.994 19 C -0.025 4.025 20 C 0.002 3.998 21 C -0.087 4.087 22 C -0.103 4.103 23 C -0.033 4.033 24 Cl -0.067 7.067 25 C -0.104 4.104 26 C -0.090 4.090 27 O -0.175 6.175 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.189 0.811 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.299 -29.510 3.197 31.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.322 5.322 3 C 0.126 3.874 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.306 3.694 13 O -0.406 6.406 14 C -0.302 4.302 15 S 0.363 5.637 16 C -0.144 4.144 17 N -0.222 5.222 18 C -0.137 4.137 19 C -0.082 4.082 20 C 0.001 3.999 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.059 4.059 24 Cl -0.038 7.038 25 C -0.122 4.122 26 C -0.109 4.109 27 O -0.064 6.064 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.206 0.794 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.632 -28.794 3.243 30.535 hybrid contribution -1.085 -0.456 -0.995 1.541 sum -10.718 -29.250 2.248 31.233 Atomic orbital electron populations 1.21750 0.80878 1.03037 1.00904 1.48079 1.06520 1.07234 1.70375 1.19401 0.92661 0.77484 0.97836 1.21450 1.36787 1.06485 0.92156 0.92266 1.24933 0.95220 0.96319 0.97554 1.69937 1.38201 1.14322 1.30731 0.86423 0.78149 0.78327 0.84415 1.19764 1.20927 1.20802 1.19266 0.87656 0.83918 0.78598 1.90733 1.13133 1.86417 1.50306 1.23981 1.02274 0.94883 1.09018 1.86833 0.99748 0.86838 1.90238 1.29012 0.95293 0.87547 1.02514 1.70987 1.05231 1.25192 1.20775 1.23335 1.00388 0.87025 1.02938 1.21264 0.83843 0.92064 1.11017 1.17670 0.94268 0.86327 1.01662 1.21009 0.96383 0.93941 0.99262 1.20949 0.97926 0.92958 1.00364 1.21089 0.95143 0.84972 1.04731 1.98389 1.98544 1.10061 1.96792 1.21017 0.96581 0.94565 1.00071 1.21293 0.98587 0.92831 0.98159 1.84619 1.33934 1.16998 1.70823 0.93233 0.90279 0.92171 0.94538 0.93524 0.92669 0.85871 0.86011 0.79372 0.84205 0.84089 0.84256 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.24 59.85 0.61 1.77 16 2 N -0.59 -11.92 2.86 -182.95 -0.52 -12.44 16 3 C 0.25 6.19 5.16 -5.19 -0.03 6.16 16 4 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 10.30 7.69 -10.99 -0.08 10.22 16 13 O -0.53 -12.61 15.44 5.56 0.09 -12.52 16 14 C -0.15 -2.18 4.22 36.01 0.15 -2.03 16 15 S 0.13 1.93 21.45 -107.50 -2.31 -0.37 16 16 C 0.17 2.28 8.42 52.53 0.44 2.72 16 17 N -0.49 -6.34 10.61 -13.61 -0.14 -6.48 16 18 C 0.01 0.06 11.28 -17.43 -0.20 -0.14 16 19 C -0.02 -0.26 7.06 -36.64 -0.26 -0.52 16 20 C 0.00 0.01 5.87 -104.98 -0.62 -0.60 16 21 C -0.09 -0.54 9.57 -39.17 -0.37 -0.92 16 22 C -0.10 -0.61 9.81 -39.61 -0.39 -0.99 16 23 C -0.03 -0.22 6.32 -39.40 -0.25 -0.47 16 24 Cl -0.07 -0.43 28.95 -51.86 -1.50 -1.94 16 25 C -0.10 -0.70 9.81 -39.61 -0.39 -1.09 16 26 C -0.09 -0.71 9.73 -39.17 -0.38 -1.09 16 27 O -0.18 -2.25 10.61 2.48 0.03 -2.22 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.12 1.63 7.40 -51.92 -0.38 1.25 16 35 H 0.12 1.53 8.11 -51.91 -0.42 1.11 16 36 H 0.19 1.23 7.28 -52.49 -0.38 0.85 16 37 H 0.14 0.54 7.03 -52.49 -0.37 0.17 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.14 1.03 7.94 -52.49 -0.42 0.62 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -33.19 382.24 -9.41 -42.60 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -4.34 Total: -3.26 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.18 Total: -0.32 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.07 Total: -44.23 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.11 Total: -14.74 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.31 Total: -0.37 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.19 -9.41 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014163193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.047 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds