Wall clock time and date at job start Tue Mar 31 2020 05:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 120.00261 * 2 1 4 4 H 1.48495 * 109.47786 * 240.00383 * 3 2 1 5 5 H 1.48504 * 109.46745 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46820 * 120.00355 * 3 2 1 7 7 C 1.39907 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99801 * 195.58041 * 7 2 1 9 9 C 1.41151 * 119.99874 * 15.30680 * 7 2 1 10 10 C 1.40872 * 120.16695 * 24.81251 * 9 7 2 11 11 C 1.36371 * 119.83004 * 179.71741 * 10 9 7 12 12 C 1.39486 * 120.16832 * 0.53560 * 11 10 9 13 13 N 1.39234 * 119.83349 * 179.73786 * 12 11 10 14 14 C 1.34773 * 120.00397 * 36.04058 * 13 12 11 15 15 O 1.21284 * 119.99432 * 355.47743 * 14 13 12 16 16 C 1.50693 * 120.00452 * 175.46975 * 14 13 12 17 17 H 1.09004 * 110.85570 * 62.33958 * 16 14 13 18 18 C 1.54621 * 110.97396 * 298.55169 * 16 14 13 19 19 C 1.51279 * 104.20048 * 217.08041 * 18 16 14 20 20 O 1.21279 * 124.94826 * 196.28437 * 19 18 16 21 21 N 1.34422 * 110.11257 * 16.24897 * 19 18 16 22 22 C 1.46501 * 124.35082 * 180.42717 * 21 19 18 23 23 C 1.50697 * 109.47103 * 89.97579 * 22 21 19 24 24 C 1.38240 * 120.00269 * 269.73308 * 23 22 21 25 25 C 1.38230 * 120.00082 * 179.81185 * 24 23 22 26 26 C 1.38232 * 119.99946 * 0.41124 * 25 24 23 27 27 C 1.38239 * 120.00445 * 359.81864 * 26 25 24 28 28 C 1.38236 * 120.00040 * 89.99725 * 23 22 21 29 29 C 1.46760 * 111.29946 * 0.40921 * 21 19 18 30 30 C 1.39484 * 120.33234 * 359.76049 * 12 11 10 31 31 C 1.36376 * 120.16705 * 359.95421 * 30 12 11 32 32 H 0.96996 * 119.99783 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.08063 * 359.97183 * 10 9 7 34 34 H 1.07997 * 119.91904 * 180.27125 * 11 10 9 35 35 H 0.97004 * 119.99614 * 216.04515 * 13 12 11 36 36 H 1.09002 * 110.48994 * 335.75800 * 18 16 14 37 37 H 1.09003 * 110.48972 * 98.26756 * 18 16 14 38 38 H 1.08999 * 109.47217 * 209.97883 * 22 21 19 39 39 H 1.09011 * 109.47062 * 329.98051 * 22 21 19 40 40 H 1.08007 * 119.99732 * 359.97438 * 24 23 22 41 41 H 1.08001 * 120.00248 * 180.20627 * 25 24 23 42 42 H 1.08001 * 120.00129 * 179.79399 * 26 25 24 43 43 H 1.07992 * 120.00494 * 179.97438 * 27 26 25 44 44 H 1.08000 * 119.99642 * 359.97438 * 28 23 22 45 45 H 1.09004 * 110.24582 * 223.98068 * 29 21 19 46 46 H 1.09007 * 110.24767 * 101.98412 * 29 21 19 47 47 H 1.08001 * 119.91493 * 179.97438 * 30 12 11 48 48 H 1.08008 * 120.08174 * 180.02562 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7464 0.0006 6 1 3.0966 1.6962 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0585 -1.2289 0.2507 9 6 1.3400 -2.4122 -0.3238 10 6 0.1813 -2.3840 -1.1245 11 6 -0.4555 -3.5485 -1.4374 12 6 0.0311 -4.7645 -0.9575 13 7 -0.6277 -5.9488 -1.2767 14 6 -1.1925 -6.0996 -2.4911 15 8 -1.1986 -5.1749 -3.2760 16 6 -1.8162 -7.4169 -2.8738 17 1 -2.6520 -7.6561 -2.2163 18 6 -0.7644 -8.5502 -2.8662 19 6 -1.1553 -9.4272 -4.0352 20 8 -0.7665 -10.5622 -4.2128 21 7 -1.9969 -8.7657 -4.8482 22 6 -2.5770 -9.3267 -6.0709 23 6 -3.8810 -10.0066 -5.7421 24 6 -3.8955 -11.3467 -5.4028 25 6 -5.0912 -11.9694 -5.0974 26 6 -6.2734 -11.2543 -5.1396 27 6 -6.2596 -9.9155 -5.4835 28 6 -5.0634 -9.2918 -5.7851 29 6 -2.2603 -7.4094 -4.3533 30 6 1.1743 -4.7999 -0.1590 31 6 1.8252 -3.6440 0.1575 32 1 -0.4849 0.8400 0.0004 33 1 -0.1992 -1.4428 -1.4930 34 1 -1.3414 -3.5290 -2.0548 35 1 -0.6803 -6.6653 -0.6250 36 1 0.2362 -8.1432 -3.0125 37 1 -0.8143 -9.1108 -1.9327 38 1 -2.7555 -8.5261 -6.7888 39 1 -1.8868 -10.0528 -6.5005 40 1 -2.9723 -11.9064 -5.3737 41 1 -5.1022 -13.0155 -4.8291 42 1 -7.2081 -11.7417 -4.9042 43 1 -7.1833 -9.3569 -5.5168 44 1 -5.0525 -8.2458 -6.0539 45 1 -3.3236 -7.1809 -4.4269 46 1 -1.6775 -6.6818 -4.9183 47 1 1.5450 -5.7450 0.2093 48 1 2.7105 -3.6731 0.7756 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014171308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:23 Heat of formation + Delta-G solvation = -19.093837 kcal Electronic energy + Delta-G solvation = -30928.683606 eV Core-core repulsion = 26719.916920 eV Total energy + Delta-G solvation = -4208.766685 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -41.03455 -39.66697 -39.10272 -37.40731 -36.32141 -34.55686 -34.01419 -32.97729 -31.19159 -31.03007 -29.53971 -29.01379 -27.85443 -26.67376 -25.13291 -23.31624 -22.77233 -21.84936 -21.39844 -20.85232 -19.63425 -19.53321 -17.63273 -17.36809 -17.19073 -16.96820 -16.36319 -15.95262 -15.70332 -15.29735 -15.24510 -14.95291 -14.71709 -14.04363 -14.02361 -13.78555 -13.71605 -13.59901 -13.40917 -13.00012 -12.86903 -12.82091 -12.60767 -12.32345 -12.07813 -11.84893 -11.78858 -11.63577 -11.43004 -11.36271 -11.25894 -11.14065 -11.12060 -10.72705 -10.19352 -9.95228 -9.72811 -9.45735 -9.21387 -9.16277 -9.10560 -8.98022 -8.87020 -7.56626 -7.06546 -6.76812 -4.35485 0.95306 1.11146 2.38751 2.47901 2.75489 2.92816 3.04367 3.06735 3.08049 3.25154 3.51604 3.59969 3.89944 4.07890 4.20026 4.45175 4.51784 4.58033 4.69748 4.71026 4.74423 4.83987 4.92080 5.13937 5.16837 5.26590 5.32306 5.33838 5.40678 5.55822 5.66625 5.67122 5.74961 5.76548 6.10640 6.15105 6.21159 6.21748 6.29620 6.35498 6.69081 6.72977 6.86249 6.93903 7.00158 7.11086 7.24007 7.55357 7.61503 7.90696 7.95213 8.01316 8.13359 8.25909 8.58264 8.65295 8.84295 8.95276 10.14293 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021331 B = 0.001728 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.324941 B =16197.915696 C =16856.904573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.456 4.456 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.158 4.158 11 C -0.084 4.084 12 C -0.013 4.013 13 N -0.644 5.644 14 C 0.510 3.490 15 O -0.525 6.525 16 C -0.121 4.121 17 H 0.114 0.886 18 C -0.145 4.145 19 C 0.523 3.477 20 O -0.531 6.531 21 N -0.614 5.614 22 C 0.165 3.835 23 C -0.110 4.110 24 C -0.097 4.097 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.104 4.104 29 C 0.118 3.882 30 C -0.102 4.102 31 C -0.216 4.216 32 H 0.282 0.718 33 H 0.123 0.877 34 H 0.106 0.894 35 H 0.395 0.605 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 -17.526 -8.557 22.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.485 4.485 8 H 0.096 0.904 9 C 0.103 3.897 10 C -0.178 4.178 11 C -0.104 4.104 12 C -0.106 4.106 13 N -0.286 5.286 14 C 0.295 3.705 15 O -0.402 6.402 16 C -0.143 4.143 17 H 0.132 0.868 18 C -0.186 4.186 19 C 0.311 3.689 20 O -0.408 6.408 21 N -0.347 5.347 22 C 0.044 3.956 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.123 4.123 29 C -0.005 4.005 30 C -0.122 4.122 31 C -0.236 4.236 32 H 0.093 0.907 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.229 0.771 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.102 0.898 46 H 0.113 0.887 47 H 0.108 0.892 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.872 -17.320 -9.287 22.459 hybrid contribution 0.141 0.420 0.550 0.707 sum -10.731 -16.900 -8.737 21.842 Atomic orbital electron populations 1.69821 1.07553 1.29374 1.34895 1.25941 0.94797 1.01418 0.92323 0.86326 0.80089 0.80087 0.79987 1.18790 1.20305 1.18995 1.19549 0.97304 0.91041 1.40617 0.90412 1.17694 0.91559 0.92090 0.88389 1.21069 0.98869 0.96852 1.00961 1.20524 0.99299 0.91217 0.99390 1.17159 0.97997 0.84355 1.11040 1.42891 1.54228 1.17454 1.14007 1.19936 0.79811 0.88648 0.82108 1.90714 1.57593 1.41235 1.50624 1.22209 0.99581 0.94117 0.98415 0.86763 1.22355 1.00855 0.96102 0.99271 1.20786 0.77708 0.86305 0.84074 1.90707 1.56860 1.17596 1.75637 1.48335 1.46488 1.14997 1.24886 1.20265 0.91579 0.98244 0.85511 1.20243 0.95192 0.94412 1.01260 1.21189 0.98350 0.94379 0.97631 1.21178 0.92613 1.00060 1.00303 1.21200 0.98163 0.94608 0.99559 1.21154 0.98001 0.95039 0.99979 1.21093 0.92073 0.99686 0.99434 1.21999 1.02492 0.83170 0.92792 1.20046 0.94335 0.97158 1.00641 1.20549 1.03212 0.92678 1.07164 0.90734 0.85915 0.87645 0.77130 0.87013 0.87224 0.89145 0.89001 0.85666 0.86073 0.86156 0.85989 0.85961 0.89849 0.88687 0.89160 0.88632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.15 10.82 55.55 0.60 -19.54 16 2 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 3 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -11.84 9.05 -37.85 -0.34 -12.19 16 8 H 0.08 1.93 7.89 -52.49 -0.41 1.51 16 9 C 0.11 2.76 5.58 -106.80 -0.60 2.16 16 10 C -0.16 -4.10 8.64 -39.26 -0.34 -4.44 16 11 C -0.08 -2.01 8.61 -39.79 -0.34 -2.35 16 12 C -0.01 -0.28 6.29 -83.57 -0.53 -0.81 16 13 N -0.64 -10.15 5.25 -9.74 -0.05 -10.21 16 14 C 0.51 7.71 6.90 -10.99 -0.08 7.63 16 15 O -0.53 -10.10 13.03 5.55 0.07 -10.03 16 16 C -0.12 -1.26 3.55 -90.15 -0.32 -1.58 16 17 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 18 C -0.15 -1.47 6.37 -26.75 -0.17 -1.64 16 19 C 0.52 6.34 8.02 -10.86 -0.09 6.26 16 20 O -0.53 -8.03 17.59 5.56 0.10 -7.94 16 21 N -0.61 -6.34 2.92 -173.78 -0.51 -6.85 16 22 C 0.17 1.47 6.06 -5.19 -0.03 1.44 16 23 C -0.11 -1.00 5.46 -104.62 -0.57 -1.57 16 24 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 25 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 26 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 29 C 0.12 1.20 6.66 -3.13 -0.02 1.18 16 30 C -0.10 -2.13 9.90 -39.79 -0.39 -2.53 16 31 C -0.22 -5.08 9.74 -39.26 -0.38 -5.47 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 33 H 0.12 3.33 6.07 -52.49 -0.32 3.01 16 34 H 0.11 2.50 6.27 -52.49 -0.33 2.17 16 35 H 0.40 4.77 8.82 -40.82 -0.36 4.41 16 36 H 0.11 1.21 7.89 -51.93 -0.41 0.80 16 37 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 39 H 0.09 0.85 7.87 -51.92 -0.41 0.44 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 1.12 7.06 -51.92 -0.37 0.75 16 47 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -31.58 405.16 -11.35 -42.93 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.39 Total: 11.03 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -6.25 Total: -18.85 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.04 Total: -36.60 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.58 -11.35 -42.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014171308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.834 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds